RchiOBHm_Chr4g0402291

Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0019887
Physical Location & Seq
Forward (+)
20814534 .. 20814904
371 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37411

Sequence Viewer

Length: 177 bp
ATGAGTACTTACACGAATGCTAGAGGTCAAGGCCGTGTCTTCAATGTGGAGTTAACAGATGAAGATGGAACTAAAATTCAAGCTACAATGTTTAATGAAGCTGCAAGGAAGTTTTTTGAAAAGTTTCAACTAAGGCCATGTCTTCAATGTAGAGTTAACAGACAAAGATGGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000228 GO:0000278 GO:0000723 GO:0000724 GO:0000725 GO:0000781 GO:0000784 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005662 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006268 GO:0006278 GO:0006279 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007004 GO:0007049 GO:0007063 GO:0007088 GO:0007346 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010224 GO:0010556 GO:0010557 GO:0010564 GO:0010604 GO:0010638 GO:0010639 GO:0010833 GO:0010948 GO:0016043 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022402 GO:0022414 GO:0030894 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032200 GO:0032204 GO:0032206 GO:0032210 GO:0032212 GO:0032392 GO:0032508 GO:0032879 GO:0032880 GO:0032991 GO:0032993 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0033260 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0035861 GO:0042162 GO:0042592 GO:0043047 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044786 GO:0045786 GO:0045839 GO:0045875 GO:0045930 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051098 GO:0051101 GO:0051128 GO:0051129 GO:0051130 GO:0051171 GO:0051173 GO:0051276 GO:0051321 GO:0051716 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0060249 GO:0060255 GO:0060341 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070034 GO:0071103 GO:0071704 GO:0071840 GO:0071897 GO:0071922 GO:0071923 GO:0080090 GO:0090304 GO:0090734 GO:0097159 GO:0098687 GO:0098847 GO:0106111 GO:0106112 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902969 GO:1903046 GO:1903047 GO:1903827 GO:1903828 GO:1904356 GO:1904358 GO:1905405 GO:1905412 GO:1905634 GO:2000112 GO:2000278 GO:2000573 GO:2001251 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460
Pfam Domains
Protein Families
REPA_OB_2 Rep-A_N Rep_fac-A_C tRNA_anti-codon

Protein Analysis

58

Amino Acids

6.9

Weight (kDa)

9.69

Isoelectric Point (pI)

40.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA_anti-codon PF01336 6 - 45 6.4e-06 OB-fold nucleic acid binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019887)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0106871 RchiOBHm_Chr4g0402291 RchiOBHm_Chr5g0032071 RchiOBHm_Chr5g0038981
rosa_laevigata RLG00000019627
rosa_samantha Rh2BG201800 Rh5BG223600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 75
AfaI GTAC 1 cut(s) 7
AgsI TTSAA 5 cut(s) 43, 80, 119, 128, 146
AluBI AGCT 2 cut(s) 83, 101
AluI AGCT 2 cut(s) 83, 101
AoxI GGCC 2 cut(s) 31, 134
ApeKI GCWGC 1 cut(s) 101
ApoI RAATTY 1 cut(s) 75
Asp700I GAANNNNTTC 1 cut(s) 123
BbsI GAAGAC 2 cut(s) 31, 134
BbvI GCAGC 1 cut(s) 88
BccI CCATC 2 cut(s) 59, 162
BceAI ACGGC 1 cut(s) 18
BfaI CTAG 1 cut(s) 21
BisI GCNGC 1 cut(s) 102
BlsI GCNGC 1 cut(s) 103
BmcAI AGTACT 1 cut(s) 7
BpiI GAAGAC 2 cut(s) 31, 134
BseXI GCAGC 1 cut(s) 88
BshFI GGCC 2 cut(s) 33, 136
BsmI GAATGC 1 cut(s) 22
BsnI GGCC 2 cut(s) 33, 136
BspANI GGCC 2 cut(s) 33, 136
BstDEI CTNAG 1 cut(s) 131
BstV1I GCAGC 1 cut(s) 88
BstV2I GAAGAC 2 cut(s) 31, 134
BsuRI GGCC 2 cut(s) 33, 136
Csp6I GTAC 1 cut(s) 6
CviAII CATG 1 cut(s) 138
CviJI RGCY 4 cut(s) 33, 83, 101, 136
CviKI_1 RGCY 4 cut(s) 33, 83, 101, 136
CviQI GTAC 1 cut(s) 6
DdeI CTNAG 1 cut(s) 131
FaeI CATG 1 cut(s) 141
FaiI YATR 1 cut(s) 139
FatI CATG 1 cut(s) 137
Fnu4HI GCNGC 1 cut(s) 102
Fsp4HI GCNGC 1 cut(s) 102
FspBI CTAG 1 cut(s) 21
FspEI CC 9 cut(s) 9, 15, 32, 47, 51, 91, 118, 150, 154
GluI GCNGC 1 cut(s) 102
HaeIII GGCC 2 cut(s) 33, 136
Hin1II CATG 1 cut(s) 141
HincII GTYRAC 2 cut(s) 54, 157
HindII GTYRAC 2 cut(s) 54, 157
HpaI GTTAAC 2 cut(s) 54, 157
Hpy166II GTNNAC 2 cut(s) 54, 157
Hpy8I GTNNAC 2 cut(s) 54, 157
HpyCH4V TGCA 1 cut(s) 104
HpyF3I CTNAG 1 cut(s) 131
Hsp92II CATG 1 cut(s) 141
KspAI GTTAAC 2 cut(s) 54, 157
Lsp1109I GCAGC 1 cut(s) 88
MaeI CTAG 1 cut(s) 21
MboII GAAGA 3 cut(s) 31, 74, 134
MluCI AATT 1 cut(s) 75
MnlI CCTC 1 cut(s) 17
MroXI GAANNNNTTC 1 cut(s) 123
MseI TTAA 3 cut(s) 53, 93, 156
Mva1269I GAATGC 1 cut(s) 22
NlaIII CATG 1 cut(s) 141
PctI GAATGC 1 cut(s) 22
PdmI GAANNNNTTC 1 cut(s) 123
PkrI GCNGC 1 cut(s) 103
RsaI GTAC 1 cut(s) 7
RsaNI GTAC 1 cut(s) 6
SaqAI TTAA 3 cut(s) 53, 93, 156
SatI GCNGC 1 cut(s) 102
ScaI AGTACT 1 cut(s) 7
SetI ASST 3 cut(s) 28, 85, 103
SgeI CNNG 7 cut(s) 25, 33, 41, 47, 92, 117, 150
Sse9I AATT 1 cut(s) 75
SspMI CTAG 1 cut(s) 21
TasI AATT 1 cut(s) 75
TatI WGTACW 1 cut(s) 5
Tru1I TTAA 3 cut(s) 53, 93, 156
Tru9I TTAA 3 cut(s) 53, 93, 156
TseI GCWGC 1 cut(s) 101
TspDTI ATGAA 2 cut(s) 75, 111
XapI RAATTY 1 cut(s) 75
XmnI GAANNNNTTC 1 cut(s) 123
XspI CTAG 1 cut(s) 21
ZrmI AGTACT 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.