RchiOBHm_Chr4g0409431

Eukaryotic protein of unknown function (DUF829)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0022738
Physical Location & Seq
Reverse (-)
32844095 .. 32845337
1243 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38044

Sequence Viewer

Length: 510 bp
ATGGCTGACATTCTCAAATACCAGCCTGGTGGTAAAGTCGAACACCACATTGACCTGCTTGTCAGTCATTTGGCTAATTGGTTAGAAGAGGAGCAGGGAAAGAACCTGCTTTTTCATACTTTTAGCAACACCGGATGGTTAACGTATGGTGTAATGTTGGAGAAGTTCCAGAAGCACGATCCTTCTGTAATGGGCAGGATTCGGGGCTGCATTGTGGATTCCGCACCTGTTGCAGCACCTGACCCGCAGGTCTGGGCTTCTGGTTTCTCTGCAGCCTTTCTGAAAAAGCATAGTGTAGCAACGAAAGGAACCACAGACGCTAGTGAGTCAGGGATGGATGCTTTGGTTGACAGCAAGGCAGTAGTGGCACCCAAACCTGCAGTAACTGAGGCAGCTTTGCTTTTAGTTTTGGAGAAGTTCTTTGAGGTGGTTTTGAATCTTCCTACAGTGAACAGGTACTCTATCTTGGTATTAGGCAGTCTAGTGTATTTTTGGATAGGAAACAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF829

Protein Analysis

169

Amino Acids

18.54

Weight (kDa)

6.28

Isoelectric Point (pI)

26.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF829 PF05705 15 - 154 1.4e-22 Eukaryotic protein of unknown function (DUF829)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes (Group: OG0022738)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0409431
rosa_samantha Rh2CG303300 Rh2DG339300 Rh7AG487400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 59, 248
Acc36I ACCTGC 4 cut(s) 63, 114, 238, 385
AccB1I GGYRCC 1 cut(s) 367
AciI CCGC 2 cut(s) 222, 245
AclWI GGATC 1 cut(s) 173
AfaI GTAC 1 cut(s) 458
AgsI TTSAA 1 cut(s) 436
AjnI CCWGG 1 cut(s) 25
AluBI AGCT 1 cut(s) 395
AluI AGCT 1 cut(s) 395
AlwI GGATC 1 cut(s) 173
AlwNI CAGNNNCTG 2 cut(s) 239, 386
ApeKI GCWGC 4 cut(s) 207, 233, 272, 392
BanI GGYRCC 1 cut(s) 367
BbvI GCAGC 4 cut(s) 194, 245, 284, 404
BccI CCATC 2 cut(s) 129, 328
BciT130I CCWGG 1 cut(s) 27
BfaI CTAG 2 cut(s) 321, 482
BfmI CTRYAG 3 cut(s) 270, 378, 444
BfuAI ACCTGC 4 cut(s) 63, 114, 238, 385
BisI GCNGC 4 cut(s) 208, 234, 273, 393
BlsI GCNGC 4 cut(s) 209, 235, 274, 394
Bme1390I CCNGG 1 cut(s) 27
BmiI GGNNCC 2 cut(s) 310, 369
BmrFI CCNGG 1 cut(s) 27
BmsI GCATC 1 cut(s) 328
BsaWI WCCGGW 1 cut(s) 131
BseBI CCWGG 1 cut(s) 27
BseGI GGATG 3 cut(s) 140, 339, 343
BseMII CTCAG 1 cut(s) 378
BseRI GAGGAG 1 cut(s) 104
BseXI GCAGC 4 cut(s) 194, 245, 284, 404
BshNI GGYRCC 1 cut(s) 367
BsiSI CCGG 1 cut(s) 132
Bsp143I GATC 1 cut(s) 178
BspACI CCGC 2 cut(s) 222, 245
BspCNI CTCAG 1 cut(s) 379
BspLI GGNNCC 2 cut(s) 310, 369
BspMAI CTGCAG 2 cut(s) 274, 382
BspMI ACCTGC 4 cut(s) 63, 114, 238, 385
BspPI GGATC 1 cut(s) 173
BspT107I GGYRCC 1 cut(s) 367
BssMI GATC 1 cut(s) 178
Bst2UI CCWGG 1 cut(s) 27
Bst4CI ACNGT 1 cut(s) 448
Bst6I CTCTTC 1 cut(s) 81
BstAPI GCANNNNNTGC 1 cut(s) 230
BstDEI CTNAG 1 cut(s) 387
BstF5I GGATG 3 cut(s) 140, 339, 343
BstKTI GATC 1 cut(s) 181
BstMBI GATC 1 cut(s) 178
BstMWI GCNNNNNNNGC 2 cut(s) 230, 365
BstNI CCWGG 1 cut(s) 27
BstSCI CCNGG 1 cut(s) 25
BstSFI CTRYAG 3 cut(s) 270, 378, 444
BstV1I GCAGC 4 cut(s) 194, 245, 284, 404
BstXI CCANNNNNNTGG 1 cut(s) 29
BtsCI GGATG 3 cut(s) 140, 339, 343
BtsIMutI CAGTG 1 cut(s) 453
BveI ACCTGC 4 cut(s) 63, 114, 238, 385
CaiI CAGNNNCTG 2 cut(s) 239, 386
CseI GACGC 1 cut(s) 326
Csp6I GTAC 1 cut(s) 457
CviJI RGCY 7 cut(s) 5, 25, 74, 207, 257, 275, 395
CviKI_1 RGCY 7 cut(s) 5, 25, 74, 207, 257, 275, 395
CviQI GTAC 1 cut(s) 457
DdeI CTNAG 1 cut(s) 387
DpnI GATC 1 cut(s) 180
DpnII GATC 1 cut(s) 178
DrdI GACNNNNNNGTC 2 cut(s) 59, 248
DseDI GACNNNNNNGTC 2 cut(s) 59, 248
Eam1104I CTCTTC 1 cut(s) 81
EarI CTCTTC 1 cut(s) 81
EcoRII CCWGG 1 cut(s) 25
FaiI YATR 3 cut(s) 117, 147, 291
FauI CCCGC 1 cut(s) 252
Fnu4HI GCNGC 4 cut(s) 208, 234, 273, 393
FokI GGATG 3 cut(s) 147, 346, 350
Fsp4HI GCNGC 4 cut(s) 208, 234, 273, 393
FspBI CTAG 2 cut(s) 321, 482
GluI GCNGC 4 cut(s) 208, 234, 273, 393
HapII CCGG 1 cut(s) 132
HgaI GACGC 1 cut(s) 326
HincII GTYRAC 2 cut(s) 141, 349
HindII GTYRAC 2 cut(s) 141, 349
HinfI GANTC 4 cut(s) 199, 218, 326, 436
HpaI GTTAAC 1 cut(s) 141
HpaII CCGG 1 cut(s) 132
Hpy166II GTNNAC 3 cut(s) 141, 349, 451
Hpy188I TCNGA 1 cut(s) 282
Hpy188III TCNNGA 1 cut(s) 169
Hpy8I GTNNAC 3 cut(s) 141, 349, 451
HpyAV CCTTC 1 cut(s) 192
HpyCH4III ACNGT 1 cut(s) 448
HpyCH4IV ACGT 1 cut(s) 143
HpyCH4V TGCA 4 cut(s) 210, 233, 272, 380
HpyF10VI GCNNNNNNNGC 2 cut(s) 230, 365
HpyF3I CTNAG 1 cut(s) 387
HpySE526I ACGT 1 cut(s) 143
KspAI GTTAAC 1 cut(s) 141
Kzo9I GATC 1 cut(s) 178
LmnI GCTCC 1 cut(s) 91
Lsp1109I GCAGC 4 cut(s) 194, 245, 284, 404
LweI GCATC 1 cut(s) 328
MaeI CTAG 2 cut(s) 321, 482
MaeII ACGT 1 cut(s) 143
MaeIII GTNAC 1 cut(s) 382
MalI GATC 1 cut(s) 180
MboI GATC 1 cut(s) 178
MboII GAAGA 2 cut(s) 98, 431
MluCI AATT 1 cut(s) 76
MlyI GAGTC 1 cut(s) 335
MmeI TCCRAC 1 cut(s) 138
MnlI CCTC 3 cut(s) 82, 382, 418
MseI TTAA 1 cut(s) 140
MspI CCGG 1 cut(s) 132
MspR9I CCNGG 1 cut(s) 27
MvaI CCWGG 1 cut(s) 27
MwoI GCNNNNNNNGC 2 cut(s) 230, 365
NdeII GATC 1 cut(s) 178
NlaIV GGNNCC 2 cut(s) 310, 369
PfeI GAWTC 3 cut(s) 199, 218, 436
PkrI GCNGC 4 cut(s) 209, 235, 274, 394
PleI GAGTC 1 cut(s) 334
PpsI GAGTC 1 cut(s) 334
Psp6I CCWGG 1 cut(s) 25
PspGI CCWGG 1 cut(s) 25
PspN4I GGNNCC 2 cut(s) 310, 369
PstI CTGCAG 2 cut(s) 274, 382
PstNI CAGNNNCTG 2 cut(s) 239, 386
RsaI GTAC 1 cut(s) 458
RsaNI GTAC 1 cut(s) 457
SaqAI TTAA 1 cut(s) 140
SatI GCNGC 4 cut(s) 208, 234, 273, 393
Sau3AI GATC 1 cut(s) 178
SchI GAGTC 1 cut(s) 335
ScrFI CCNGG 1 cut(s) 27
SfaNI GCATC 1 cut(s) 328
SfcI CTRYAG 3 cut(s) 270, 378, 444
Sse9I AATT 1 cut(s) 76
SsiI CCGC 2 cut(s) 222, 245
SspMI CTAG 2 cut(s) 321, 482
StyD4I CCNGG 1 cut(s) 25
TaaI ACNGT 1 cut(s) 448
TaiI ACGT 1 cut(s) 146
TaqI TCGA 1 cut(s) 39
TasI AATT 1 cut(s) 76
TfiI GAWTC 3 cut(s) 199, 218, 436
Tru1I TTAA 1 cut(s) 140
Tru9I TTAA 1 cut(s) 140
TscAI CASTG 1 cut(s) 453
TseI GCWGC 4 cut(s) 207, 233, 272, 392
TspDTI ATGAA 1 cut(s) 104
TspRI CASTG 1 cut(s) 453
XspI CTAG 2 cut(s) 321, 482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.