Rh2CG303300

Eukaryotic protein of unknown function (DUF829)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0022738
Physical Location & Seq
Reverse (-)
35617868 .. 35618800
933 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG303300.1

Sequence Viewer

Length: 321 bp
ATGGGCAGGATTCGGGGCTGCGTTGTGGATTCCGCACCTGTTGCAGCACCTAACCTGCAGGTCTGGGCTTCTGGTTTCTCTGCAGCCTTTCTGAAAAAGCATAGTGTAGCAACGAAAGGAACCACAAACGCTAGTGAGTCAGGGATGGATGCTTTGGTTGACAGCAAGGCAGTAGTGGCACCCAAACCTGCAGTAACTGAGGCAGCTTTGCTTTTAGTTTTGGAGAAGTTCTTTGAGGTGGTTTTGAATCTTCCTACAGTGAACAGGTACTCTATCTTGGTATTAGGCAGTCTAGTGTATTTTTGGATAGGAAACAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF829

Protein Analysis

106

Amino Acids

11.26

Weight (kDa)

9.3

Isoelectric Point (pI)

20.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF829 PF05705 2 - 91 6.2e-08 Eukaryotic protein of unknown function (DUF829)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022738)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0409431
rosa_samantha Rh2CG303300 Rh2DG339300 Rh7AG487400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 49, 63, 196
AccB1I GGYRCC 1 cut(s) 178
AciI CCGC 1 cut(s) 33
AfaI GTAC 1 cut(s) 269
AgsI TTSAA 1 cut(s) 247
AluBI AGCT 1 cut(s) 206
AluI AGCT 1 cut(s) 206
AlwNI CAGNNNCTG 1 cut(s) 197
ApeKI GCWGC 4 cut(s) 18, 44, 83, 203
BanI GGYRCC 1 cut(s) 178
BbvI GCAGC 4 cut(s) 5, 56, 95, 215
BccI CCATC 1 cut(s) 139
BfaI CTAG 2 cut(s) 132, 293
BfmI CTRYAG 4 cut(s) 56, 81, 189, 255
BfuAI ACCTGC 3 cut(s) 49, 63, 196
BisI GCNGC 4 cut(s) 19, 45, 84, 204
BlsI GCNGC 4 cut(s) 20, 46, 85, 205
BmiI GGNNCC 2 cut(s) 121, 180
BmsI GCATC 1 cut(s) 139
BseGI GGATG 2 cut(s) 150, 154
BseMII CTCAG 1 cut(s) 189
BseXI GCAGC 4 cut(s) 5, 56, 95, 215
BshNI GGYRCC 1 cut(s) 178
BspACI CCGC 1 cut(s) 33
BspCNI CTCAG 1 cut(s) 190
BspLI GGNNCC 2 cut(s) 121, 180
BspMAI CTGCAG 3 cut(s) 60, 85, 193
BspMI ACCTGC 3 cut(s) 49, 63, 196
BspT107I GGYRCC 1 cut(s) 178
Bst4CI ACNGT 1 cut(s) 259
BstAPI GCANNNNNTGC 1 cut(s) 41
BstDEI CTNAG 1 cut(s) 198
BstF5I GGATG 2 cut(s) 150, 154
BstMWI GCNNNNNNNGC 2 cut(s) 41, 176
BstSFI CTRYAG 4 cut(s) 56, 81, 189, 255
BstV1I GCAGC 4 cut(s) 5, 56, 95, 215
BtsCI GGATG 2 cut(s) 150, 154
BtsIMutI CAGTG 1 cut(s) 264
BveI ACCTGC 3 cut(s) 49, 63, 196
CaiI CAGNNNCTG 1 cut(s) 197
Csp6I GTAC 1 cut(s) 268
CviJI RGCY 4 cut(s) 18, 68, 86, 206
CviKI_1 RGCY 4 cut(s) 18, 68, 86, 206
CviQI GTAC 1 cut(s) 268
DdeI CTNAG 1 cut(s) 198
FaiI YATR 1 cut(s) 102
Fnu4HI GCNGC 4 cut(s) 19, 45, 84, 204
FokI GGATG 2 cut(s) 157, 161
Fsp4HI GCNGC 4 cut(s) 19, 45, 84, 204
FspBI CTAG 2 cut(s) 132, 293
GluI GCNGC 4 cut(s) 19, 45, 84, 204
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HinfI GANTC 4 cut(s) 10, 29, 137, 247
Hpy166II GTNNAC 2 cut(s) 160, 262
Hpy188I TCNGA 1 cut(s) 93
Hpy8I GTNNAC 2 cut(s) 160, 262
HpyCH4III ACNGT 1 cut(s) 259
HpyCH4V TGCA 4 cut(s) 44, 58, 83, 191
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 176
HpyF3I CTNAG 1 cut(s) 198
LpnPI CCDG 9 cut(s) 44, 49, 51, 57, 68, 126, 201, 250, 301
Lsp1109I GCAGC 4 cut(s) 5, 56, 95, 215
LweI GCATC 1 cut(s) 139
MaeI CTAG 2 cut(s) 132, 293
MaeIII GTNAC 1 cut(s) 193
MboII GAAGA 1 cut(s) 242
MlyI GAGTC 1 cut(s) 146
MnlI CCTC 2 cut(s) 193, 229
MwoI GCNNNNNNNGC 2 cut(s) 41, 176
NlaIV GGNNCC 2 cut(s) 121, 180
PfeI GAWTC 3 cut(s) 10, 29, 247
PkrI GCNGC 4 cut(s) 20, 46, 85, 205
PleI GAGTC 1 cut(s) 145
PpsI GAGTC 1 cut(s) 145
PspN4I GGNNCC 2 cut(s) 121, 180
PstI CTGCAG 3 cut(s) 60, 85, 193
PstNI CAGNNNCTG 1 cut(s) 197
RsaI GTAC 1 cut(s) 269
RsaNI GTAC 1 cut(s) 268
SatI GCNGC 4 cut(s) 19, 45, 84, 204
SbfI CCTGCAGG 1 cut(s) 60
SchI GAGTC 1 cut(s) 146
SdaI CCTGCAGG 1 cut(s) 60
SetI ASST 9 cut(s) 40, 52, 57, 63, 190, 208, 240, 269, 320
SfaNI GCATC 1 cut(s) 139
SfcI CTRYAG 4 cut(s) 56, 81, 189, 255
Sse8387I CCTGCAGG 1 cut(s) 60
SsiI CCGC 1 cut(s) 33
SspMI CTAG 2 cut(s) 132, 293
TaaI ACNGT 1 cut(s) 259
TfiI GAWTC 3 cut(s) 10, 29, 247
TscAI CASTG 1 cut(s) 264
TseI GCWGC 4 cut(s) 18, 44, 83, 203
TspRI CASTG 1 cut(s) 264
XspI CTAG 2 cut(s) 132, 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.