Rh2DG339300

Eukaryotic protein of unknown function (DUF829)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0022738
Physical Location & Seq
Reverse (-)
43881461 .. 43882739
1279 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG339300.1

Sequence Viewer

Length: 450 bp
ATGATCCACATACTAGAGAGACCGCCAGTGAAGCGACCAGATTCTGATCAGGTCCCTACCATGGAGCAACTGGAAGTTTGCTTTCCCAATCTCTCTTCTTTCTTCCATTATTATCACGATCCTTCTGTAATGGGCAGGATTCGGGGCTGCGTTGTGGATTCCGCACCTGTTGCAGCACCTAACCTGCAGGTCTGGGCTTCTGGTTTCTCTGCAGCCTTTCTGAAAAAGCATAGTGTAGCAACGAAAGGAACCACAAACGCTAGTGAGTCAGGGATGGATGCTTTGGTTGACAGCAAGGCAGTAGTGGCACCCAAACCTGCAGTAACTGAGGCAGCTTTGCTTTTAGTTTTGGAGAAGTTCTTTGAGGTGGTTTTGAATCTTCCTACAGTGAACAGGTACTCTATCTTGGTATTAGGCAGTCTAGTGTATTTTTGGATAGGAAACAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF829

Protein Analysis

149

Amino Acids

16.35

Weight (kDa)

6.9

Isoelectric Point (pI)

41.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF829 PF05705 41 - 134 2.4e-08 Eukaryotic protein of unknown function (DUF829)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022738)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0409431
rosa_samantha Rh2CG303300 Rh2DG339300 Rh7AG487400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 178, 192, 325
AccB1I GGYRCC 1 cut(s) 307
AciI CCGC 2 cut(s) 23, 162
AclWI GGATC 1 cut(s) 113
AfaI GTAC 1 cut(s) 398
AfiI CCNNNNNNNGG 1 cut(s) 61
AgsI TTSAA 1 cut(s) 376
AluBI AGCT 1 cut(s) 335
AluI AGCT 1 cut(s) 335
Alw26I GTCTC 1 cut(s) 13
AlwI GGATC 1 cut(s) 113
AlwNI CAGNNNCTG 2 cut(s) 44, 326
ApeKI GCWGC 4 cut(s) 147, 173, 212, 332
AspS9I GGNCC 1 cut(s) 52
AvaII GGWCC 1 cut(s) 52
BanI GGYRCC 1 cut(s) 307
BbvI GCAGC 4 cut(s) 134, 185, 224, 344
BccI CCATC 1 cut(s) 268
BclI TGATCA 1 cut(s) 46
BcoDI GTCTC 1 cut(s) 13
BfaI CTAG 3 cut(s) 14, 261, 422
BfmI CTRYAG 4 cut(s) 185, 210, 318, 384
BfuAI ACCTGC 3 cut(s) 178, 192, 325
BisI GCNGC 4 cut(s) 148, 174, 213, 333
BlsI GCNGC 4 cut(s) 149, 175, 214, 334
Bme18I GGWCC 1 cut(s) 52
BmgT120I GGNCC 1 cut(s) 52
BmiI GGNNCC 3 cut(s) 54, 250, 309
BmsI GCATC 1 cut(s) 268
BsaBI GATNNNNATC 1 cut(s) 45
BsaI GGTCTC 1 cut(s) 13
BsaJI CCNNGG 1 cut(s) 60
Bsc4I CCNNNNNNNGG 1 cut(s) 61
Bse1I ACTGG 2 cut(s) 26, 75
Bse8I GATNNNNATC 1 cut(s) 45
BseDI CCNNGG 1 cut(s) 60
BseGI GGATG 2 cut(s) 279, 283
BseJI GATNNNNATC 1 cut(s) 45
BseLI CCNNNNNNNGG 1 cut(s) 61
BseMII CTCAG 1 cut(s) 318
BseNI ACTGG 2 cut(s) 26, 75
BseXI GCAGC 4 cut(s) 134, 185, 224, 344
BshNI GGYRCC 1 cut(s) 307
BslFI GGGAC 1 cut(s) 38
BslI CCNNNNNNNGG 1 cut(s) 61
BsmAI GTCTC 1 cut(s) 13
BsmFI GGGAC 1 cut(s) 38
Bso31I GGTCTC 1 cut(s) 13
Bsp143I GATC 3 cut(s) 3, 46, 118
Bsp19I CCATGG 1 cut(s) 60
BspACI CCGC 2 cut(s) 23, 162
BspCNI CTCAG 1 cut(s) 319
BspLI GGNNCC 3 cut(s) 54, 250, 309
BspMAI CTGCAG 3 cut(s) 189, 214, 322
BspMI ACCTGC 3 cut(s) 178, 192, 325
BspPI GGATC 1 cut(s) 113
BspT107I GGYRCC 1 cut(s) 307
BspTNI GGTCTC 1 cut(s) 13
BsrI ACTGG 2 cut(s) 26, 75
BssECI CCNNGG 1 cut(s) 60
BssMI GATC 3 cut(s) 3, 46, 118
BssT1I CCWWGG 1 cut(s) 60
Bst4CI ACNGT 1 cut(s) 388
Bst6I CTCTTC 1 cut(s) 100
BstAPI GCANNNNNTGC 1 cut(s) 170
BstDEI CTNAG 1 cut(s) 327
BstDSI CCRYGG 1 cut(s) 60
BstF5I GGATG 2 cut(s) 279, 283
BstKTI GATC 3 cut(s) 6, 49, 121
BstMAI GTCTC 1 cut(s) 13
BstMBI GATC 3 cut(s) 3, 46, 118
BstMWI GCNNNNNNNGC 3 cut(s) 31, 170, 305
BstSFI CTRYAG 4 cut(s) 185, 210, 318, 384
BstV1I GCAGC 4 cut(s) 134, 185, 224, 344
BtgI CCRYGG 1 cut(s) 60
BtsCI GGATG 2 cut(s) 279, 283
BtsIMutI CAGTG 2 cut(s) 33, 393
BveI ACCTGC 3 cut(s) 178, 192, 325
CaiI CAGNNNCTG 2 cut(s) 44, 326
Cfr13I GGNCC 1 cut(s) 52
Csp6I GTAC 1 cut(s) 397
CviAII CATG 1 cut(s) 61
CviJI RGCY 4 cut(s) 147, 197, 215, 335
CviKI_1 RGCY 4 cut(s) 147, 197, 215, 335
CviQI GTAC 1 cut(s) 397
DdeI CTNAG 1 cut(s) 327
DpnI GATC 3 cut(s) 5, 48, 120
DpnII GATC 3 cut(s) 3, 46, 118
Eam1104I CTCTTC 1 cut(s) 100
EarI CTCTTC 1 cut(s) 100
Eco130I CCWWGG 1 cut(s) 60
Eco31I GGTCTC 1 cut(s) 13
Eco47I GGWCC 1 cut(s) 52
EcoO109I RGGNCCY 1 cut(s) 52
EcoT14I CCWWGG 1 cut(s) 60
ErhI CCWWGG 1 cut(s) 60
FaeI CATG 1 cut(s) 64
FaiI YATR 3 cut(s) 11, 62, 231
FaqI GGGAC 1 cut(s) 38
FatI CATG 1 cut(s) 60
FbaI TGATCA 1 cut(s) 46
Fnu4HI GCNGC 4 cut(s) 148, 174, 213, 333
FokI GGATG 2 cut(s) 286, 290
Fsp4HI GCNGC 4 cut(s) 148, 174, 213, 333
FspBI CTAG 3 cut(s) 14, 261, 422
GluI GCNGC 4 cut(s) 148, 174, 213, 333
Hin1II CATG 1 cut(s) 64
HincII GTYRAC 1 cut(s) 289
HindII GTYRAC 1 cut(s) 289
HinfI GANTC 5 cut(s) 41, 139, 158, 266, 376
Hpy166II GTNNAC 2 cut(s) 289, 391
Hpy188I TCNGA 2 cut(s) 46, 222
Hpy188III TCNNGA 1 cut(s) 116
Hpy8I GTNNAC 2 cut(s) 289, 391
HpyAV CCTTC 1 cut(s) 132
HpyCH4III ACNGT 1 cut(s) 388
HpyCH4V TGCA 4 cut(s) 173, 187, 212, 320
HpyF10VI GCNNNNNNNGC 3 cut(s) 31, 170, 305
HpyF3I CTNAG 1 cut(s) 327
Hsp92II CATG 1 cut(s) 64
Ksp22I TGATCA 1 cut(s) 46
Kzo9I GATC 3 cut(s) 3, 46, 118
LmnI GCTCC 1 cut(s) 64
Lsp1109I GCAGC 4 cut(s) 134, 185, 224, 344
LweI GCATC 1 cut(s) 268
MaeI CTAG 3 cut(s) 14, 261, 422
MaeIII GTNAC 1 cut(s) 322
MalI GATC 3 cut(s) 5, 48, 120
MboI GATC 3 cut(s) 3, 46, 118
MboII GAAGA 3 cut(s) 87, 94, 371
MlyI GAGTC 1 cut(s) 275
MnlI CCTC 2 cut(s) 322, 358
MwoI GCNNNNNNNGC 3 cut(s) 31, 170, 305
NcoI CCATGG 1 cut(s) 60
NdeII GATC 3 cut(s) 3, 46, 118
NlaIII CATG 1 cut(s) 64
NlaIV GGNNCC 3 cut(s) 54, 250, 309
PfeI GAWTC 4 cut(s) 41, 139, 158, 376
PkrI GCNGC 4 cut(s) 149, 175, 214, 334
PleI GAGTC 1 cut(s) 274
PpsI GAGTC 1 cut(s) 274
PpuMI RGGWCCY 1 cut(s) 52
Psp5II RGGWCCY 1 cut(s) 52
PspN4I GGNNCC 3 cut(s) 54, 250, 309
PspPI GGNCC 1 cut(s) 52
PspPPI RGGWCCY 1 cut(s) 52
PstI CTGCAG 3 cut(s) 189, 214, 322
PstNI CAGNNNCTG 2 cut(s) 44, 326
RsaI GTAC 1 cut(s) 398
RsaNI GTAC 1 cut(s) 397
SatI GCNGC 4 cut(s) 148, 174, 213, 333
Sau3AI GATC 3 cut(s) 3, 46, 118
Sau96I GGNCC 1 cut(s) 52
SbfI CCTGCAGG 1 cut(s) 189
SchI GAGTC 1 cut(s) 275
SdaI CCTGCAGG 1 cut(s) 189
SfaNI GCATC 1 cut(s) 268
SfcI CTRYAG 4 cut(s) 185, 210, 318, 384
SinI GGWCC 1 cut(s) 52
Sse8387I CCTGCAGG 1 cut(s) 189
SsiI CCGC 2 cut(s) 23, 162
SspMI CTAG 3 cut(s) 14, 261, 422
StyI CCWWGG 1 cut(s) 60
TaaI ACNGT 1 cut(s) 388
TfiI GAWTC 4 cut(s) 41, 139, 158, 376
TscAI CASTG 2 cut(s) 33, 393
TseI GCWGC 4 cut(s) 147, 173, 212, 332
TspRI CASTG 2 cut(s) 33, 393
VpaK11BI GGWCC 1 cut(s) 52
XcmI CCANNNNNNNNNTGG 1 cut(s) 67
XspI CTAG 3 cut(s) 14, 261, 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.