Rh7AG487400

Eukaryotic protein of unknown function (DUF829)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0022738
Physical Location & Seq
Forward (+)
68742449 .. 68775300
32852 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG487400.1

Sequence Viewer

Length: 378 bp
ATGGGCAGGATTCAGGGCTGCGTTGTGGATTCTGCACCTGTTGCAGCACCTGACCCGCAGGTCTGGGCTTCTGGTTTCTCTGCAGCCTTTCTGAAAAAGCATAGTGTAGCAACGAAAGGAACCACAAATGCTAGTGAGTCAGGGATGGATGCTTTGGTTGACAGCAAGGCAGTAGTGGCACCCAAACCTGCAGTAACTGAGGCAGCTTTGCTTTTAGTTTTGGAGAAGTTCTTTGAGGTGGTTTTGAATCTTCCTACAGTGAACAGCGGCAATCACAACCACAGCCACGATTCTCTCGACAGGAAAGTTTTGTTTCTCGAAAGTTTTCCAACTATGAAGATGGTTTCAAACTCTTCCAATTGGAAGATGCCACATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF829

Protein Analysis

125

Amino Acids

13.36

Weight (kDa)

6.96

Isoelectric Point (pI)

32.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF829 PF05705 2 - 94 3.3e-08 Eukaryotic protein of unknown function (DUF829)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022738)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0409431
rosa_samantha Rh2CG303300 Rh2DG339300 Rh7AG487400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 59
Acc36I ACCTGC 2 cut(s) 49, 196
AccB1I GGYRCC 1 cut(s) 178
AciI CCGC 2 cut(s) 56, 267
AgsI TTSAA 2 cut(s) 247, 348
AluBI AGCT 1 cut(s) 206
AluI AGCT 1 cut(s) 206
AlwNI CAGNNNCTG 2 cut(s) 50, 197
ApeKI GCWGC 4 cut(s) 18, 44, 83, 203
Asp700I GAANNNNTTC 1 cut(s) 324
BanI GGYRCC 1 cut(s) 178
BbvI GCAGC 4 cut(s) 5, 56, 95, 215
BccI CCATC 2 cut(s) 139, 334
BfaI CTAG 1 cut(s) 132
BfmI CTRYAG 3 cut(s) 81, 189, 255
BfuAI ACCTGC 2 cut(s) 49, 196
BisI GCNGC 5 cut(s) 19, 45, 84, 204, 268
BlsI GCNGC 5 cut(s) 20, 46, 85, 205, 269
BmiI GGNNCC 2 cut(s) 121, 180
BmsI GCATC 2 cut(s) 139, 357
BseGI GGATG 2 cut(s) 150, 154
BseMII CTCAG 1 cut(s) 189
BseXI GCAGC 4 cut(s) 5, 56, 95, 215
BsgI GTGCAG 1 cut(s) 18
BshNI GGYRCC 1 cut(s) 178
BspACI CCGC 2 cut(s) 56, 267
BspCNI CTCAG 1 cut(s) 190
BspLI GGNNCC 2 cut(s) 121, 180
BspMAI CTGCAG 2 cut(s) 85, 193
BspMI ACCTGC 2 cut(s) 49, 196
BspT107I GGYRCC 1 cut(s) 178
Bst4CI ACNGT 1 cut(s) 259
Bst6I CTCTTC 1 cut(s) 358
BstAPI GCANNNNNTGC 1 cut(s) 41
BstDEI CTNAG 1 cut(s) 198
BstF5I GGATG 2 cut(s) 150, 154
BstMWI GCNNNNNNNGC 2 cut(s) 41, 176
BstSFI CTRYAG 3 cut(s) 81, 189, 255
BstV1I GCAGC 4 cut(s) 5, 56, 95, 215
BtsCI GGATG 2 cut(s) 150, 154
BtsIMutI CAGTG 1 cut(s) 264
BveI ACCTGC 2 cut(s) 49, 196
CaiI CAGNNNCTG 2 cut(s) 50, 197
CviJI RGCY 5 cut(s) 18, 68, 86, 206, 285
CviKI_1 RGCY 5 cut(s) 18, 68, 86, 206, 285
DdeI CTNAG 1 cut(s) 198
DrdI GACNNNNNNGTC 1 cut(s) 59
DseDI GACNNNNNNGTC 1 cut(s) 59
Eam1104I CTCTTC 1 cut(s) 358
EarI CTCTTC 1 cut(s) 358
FaiI YATR 2 cut(s) 102, 335
FauI CCCGC 1 cut(s) 63
Fnu4HI GCNGC 5 cut(s) 19, 45, 84, 204, 268
FokI GGATG 2 cut(s) 157, 161
Fsp4HI GCNGC 5 cut(s) 19, 45, 84, 204, 268
FspBI CTAG 1 cut(s) 132
GluI GCNGC 5 cut(s) 19, 45, 84, 204, 268
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HinfI GANTC 5 cut(s) 10, 29, 137, 247, 290
Hpy166II GTNNAC 2 cut(s) 160, 262
Hpy188I TCNGA 1 cut(s) 93
Hpy188III TCNNGA 2 cut(s) 296, 317
Hpy8I GTNNAC 2 cut(s) 160, 262
HpyCH4III ACNGT 1 cut(s) 259
HpyCH4V TGCA 4 cut(s) 35, 44, 83, 191
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 176
HpyF3I CTNAG 1 cut(s) 198
LpnPI CCDG 8 cut(s) 44, 49, 51, 57, 63, 126, 201, 286
Lsp1109I GCAGC 4 cut(s) 5, 56, 95, 215
LweI GCATC 2 cut(s) 139, 357
MaeI CTAG 1 cut(s) 132
MaeIII GTNAC 1 cut(s) 193
MboII GAAGA 4 cut(s) 242, 345, 349, 376
MfeI CAATTG 1 cut(s) 358
MluCI AATT 1 cut(s) 358
MlyI GAGTC 1 cut(s) 146
MmeI TCCRAC 1 cut(s) 353
MnlI CCTC 2 cut(s) 193, 229
MroXI GAANNNNTTC 1 cut(s) 324
MspA1I CMGCKG 1 cut(s) 267
MunI CAATTG 1 cut(s) 358
MwoI GCNNNNNNNGC 2 cut(s) 41, 176
NlaIV GGNNCC 2 cut(s) 121, 180
PcsI WCGNNNNNNNCGW 1 cut(s) 294
PdmI GAANNNNTTC 1 cut(s) 324
PfeI GAWTC 4 cut(s) 10, 29, 247, 290
PkrI GCNGC 5 cut(s) 20, 46, 85, 205, 269
PleI GAGTC 1 cut(s) 145
PpsI GAGTC 1 cut(s) 145
PspN4I GGNNCC 2 cut(s) 121, 180
PstI CTGCAG 2 cut(s) 85, 193
PstNI CAGNNNCTG 2 cut(s) 50, 197
SatI GCNGC 5 cut(s) 19, 45, 84, 204, 268
SchI GAGTC 1 cut(s) 146
SetI ASST 6 cut(s) 40, 52, 63, 190, 208, 240
SfaNI GCATC 2 cut(s) 139, 357
SfcI CTRYAG 3 cut(s) 81, 189, 255
Sse9I AATT 1 cut(s) 358
SsiI CCGC 2 cut(s) 56, 267
SspMI CTAG 1 cut(s) 132
TaaI ACNGT 1 cut(s) 259
TaqI TCGA 2 cut(s) 297, 318
TasI AATT 1 cut(s) 358
TauI GCSGC 1 cut(s) 270
TfiI GAWTC 4 cut(s) 10, 29, 247, 290
TscAI CASTG 1 cut(s) 264
TseI GCWGC 4 cut(s) 18, 44, 83, 203
TspDTI ATGAA 1 cut(s) 350
TspRI CASTG 1 cut(s) 264
XmnI GAANNNNTTC 1 cut(s) 324
XspI CTAG 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.