RchiOBHm_Chr4g0420041

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0020993
Physical Location & Seq
Reverse (-)
45649179 .. 45649956
778 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38983

Sequence Viewer

Length: 351 bp
ATGTTGGATCCGATCGAGTTTAGAAAGGTGGTGGAAGAAATGATCGAGTTACTTGAGAAACCAAACGTCTCAGACTTTTTCCTTGCGCTAGCAAGGTTCGATATACAGGGAATTGGGAGTCAAGCAAAGAAGCTTCTGTCAGTAACGGAAAAAAAAAATTTATATTCGACCATAGAAGCGCAAATGAATAAGGCTCAAAATGAGCGAGTGCCAGAGGGCTTTCTGCAGTTCCTCTTGGAAAATAATAATCATCAAGATAGTGCAACAATGCTTATGATACAACAAATGAAGGCCTTGCTCATGGACATTGTGGTGGGAGGAACCGACACCACAGCTATAACAGTAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

116

Amino Acids

13.12

Weight (kDa)

4.76

Isoelectric Point (pI)

34.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 5 - 115 1.2e-07 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020993)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G12334
rosa_chinensis RchiOBHm_Chr4g0420041
rosa_multiflora Rmu_co8043834.1_g000001
rosa_samantha Rh4BG225000 Rh7DG199000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 2, 15
AcsI RAATTY 1 cut(s) 157
AluBI AGCT 2 cut(s) 133, 335
AluI AGCT 2 cut(s) 133, 335
Alw26I GTCTC 1 cut(s) 73
AlwI GGATC 2 cut(s) 2, 15
AoxI GGCC 1 cut(s) 291
ApoI RAATTY 1 cut(s) 157
AspLEI GCGC 2 cut(s) 88, 181
AsuNHI GCTAGC 1 cut(s) 88
BamHI GGATCC 1 cut(s) 7
BcoDI GTCTC 1 cut(s) 73
BfaI CTAG 1 cut(s) 89
BfmI CTRYAG 1 cut(s) 224
BmiI GGNNCC 2 cut(s) 9, 322
BmtI GCTAGC 1 cut(s) 92
BpuEI CTTGAG 1 cut(s) 74
BseMII CTCAG 1 cut(s) 84
Bsh1285I CGRYCG 1 cut(s) 15
BshFI GGCC 1 cut(s) 293
BsiEI CGRYCG 1 cut(s) 15
BsmAI GTCTC 1 cut(s) 73
BsmBI CGTCTC 1 cut(s) 73
BsnI GGCC 1 cut(s) 293
Bsp143I GATC 3 cut(s) 7, 12, 42
BspANI GGCC 1 cut(s) 293
BspCNI CTCAG 1 cut(s) 83
BspLI GGNNCC 2 cut(s) 9, 322
BspMAI CTGCAG 1 cut(s) 228
BspOI GCTAGC 1 cut(s) 92
BspPI GGATC 2 cut(s) 2, 15
BssMI GATC 3 cut(s) 7, 12, 42
Bst4CI ACNGT 1 cut(s) 343
BstC8I GCNNGC 1 cut(s) 90
BstDEI CTNAG 1 cut(s) 70
BstHHI GCGC 2 cut(s) 88, 181
BstKTI GATC 3 cut(s) 10, 15, 45
BstMAI GTCTC 1 cut(s) 73
BstMBI GATC 3 cut(s) 7, 12, 42
BstMCI CGRYCG 1 cut(s) 15
BstSFI CTRYAG 1 cut(s) 224
BstX2I RGATCY 1 cut(s) 7
BstYI RGATCY 1 cut(s) 7
BsuRI GGCC 1 cut(s) 293
Cac8I GCNNGC 1 cut(s) 90
CfoI GCGC 2 cut(s) 88, 181
CviAII CATG 1 cut(s) 301
CviJI RGCY 5 cut(s) 133, 194, 219, 293, 335
CviKI_1 RGCY 5 cut(s) 133, 194, 219, 293, 335
DdeI CTNAG 1 cut(s) 70
DpnI GATC 3 cut(s) 9, 14, 44
DpnII GATC 3 cut(s) 7, 12, 42
Eco147I AGGCCT 1 cut(s) 293
Esp3I CGTCTC 1 cut(s) 73
FaeI CATG 1 cut(s) 304
FaiI YATR 6 cut(s) 104, 163, 173, 275, 302, 338
FatI CATG 1 cut(s) 300
FspBI CTAG 1 cut(s) 89
GlaI GCGC 2 cut(s) 87, 180
HaeIII GGCC 1 cut(s) 293
HhaI GCGC 2 cut(s) 88, 181
Hin1II CATG 1 cut(s) 304
Hin6I GCGC 2 cut(s) 86, 179
HinP1I GCGC 2 cut(s) 86, 179
HindIII AAGCTT 1 cut(s) 131
HinfI GANTC 1 cut(s) 118
Hpy188I TCNGA 2 cut(s) 12, 73
Hpy188III TCNNGA 1 cut(s) 254
HpyAV CCTTC 1 cut(s) 283
HpyCH4III ACNGT 1 cut(s) 343
HpyCH4IV ACGT 1 cut(s) 66
HpyCH4V TGCA 2 cut(s) 226, 263
HpyF3I CTNAG 1 cut(s) 70
HpySE526I ACGT 1 cut(s) 66
Hsp92II CATG 1 cut(s) 304
HspAI GCGC 2 cut(s) 86, 179
Kzo9I GATC 3 cut(s) 7, 12, 42
LpnPI CCDG 2 cut(s) 92, 225
MaeI CTAG 1 cut(s) 89
MaeII ACGT 1 cut(s) 66
MaeIII GTNAC 2 cut(s) 48, 142
MalI GATC 3 cut(s) 9, 14, 44
MboI GATC 3 cut(s) 7, 12, 42
MboII GAAGA 1 cut(s) 47
MflI RGATCY 1 cut(s) 7
MluCI AATT 2 cut(s) 111, 157
MlyI GAGTC 1 cut(s) 127
MnlI CCTC 3 cut(s) 208, 242, 311
MslI CAYNNNNRTG 1 cut(s) 311
NdeII GATC 3 cut(s) 7, 12, 42
NheI GCTAGC 1 cut(s) 88
NlaIII CATG 1 cut(s) 304
NlaIV GGNNCC 2 cut(s) 9, 322
PceI AGGCCT 1 cut(s) 293
Ple19I CGATCG 1 cut(s) 15
PleI GAGTC 1 cut(s) 126
PpsI GAGTC 1 cut(s) 126
PspN4I GGNNCC 2 cut(s) 9, 322
PstI CTGCAG 1 cut(s) 228
PsuI RGATCY 1 cut(s) 7
PvuI CGATCG 1 cut(s) 15
RseI CAYNNNNRTG 1 cut(s) 311
Sau3AI GATC 3 cut(s) 7, 12, 42
SchI GAGTC 1 cut(s) 127
SetI ASST 5 cut(s) 30, 69, 98, 135, 337
SfcI CTRYAG 1 cut(s) 224
SmiMI CAYNNNNRTG 1 cut(s) 311
SmlI CTYRAG 1 cut(s) 53
SmoI CTYRAG 1 cut(s) 53
Sse9I AATT 2 cut(s) 111, 157
SseBI AGGCCT 1 cut(s) 293
SspMI CTAG 1 cut(s) 89
StuI AGGCCT 1 cut(s) 293
TaaI ACNGT 1 cut(s) 343
TaiI ACGT 1 cut(s) 69
TaqI TCGA 4 cut(s) 15, 45, 99, 167
TasI AATT 2 cut(s) 111, 157
TspDTI ATGAA 2 cut(s) 200, 302
TspGWI ACGGA 1 cut(s) 161
XapI RAATTY 1 cut(s) 157
XspI CTAG 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.