RchiOBHm_Chr4g0420381

Inosine-uridine preferring nucleoside hydrolase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
46072165 .. 46072924
760 bp
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UTR
Exon/CDS
Intron
PRQ39013

Sequence Viewer

Length: 270 bp
ATGTTTCTTGACCCGTTGGCTGCAAAGTCTGTGTTTGATTCCTCACTTAACATCACACTCATTCCTCTTGGCATCCAGCAGAGAGTTAGTTATTTTCCAAAAATATTAAAAAGGCTGCGCAGCACGAAGAAGACAACACCAGAAGCACTGTTTGCCCGGCGATTGCTGTCAAGGCTATACCGTTTGCAACAATTGCACCATAGCTATCACCACATGGGAACTTTCTTGGGGAAACTTCTTGGTGCAGTTCTCTTGGACGGTGACATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

89

Amino Acids

10.18

Weight (kDa)

10.49

Isoelectric Point (pI)

48.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020541)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0420381
rosa_multiflora Rmu_sc0002248.1_g000006
rosa_roxburghii Rroxscaffold_5G00363020
rosa_samantha Rh4AG224900 Rh4CG239300 Rh4DG223400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 119
AluBI AGCT 1 cut(s) 204
AluI AGCT 1 cut(s) 204
ApeKI GCWGC 3 cut(s) 20, 115, 120
AspLEI GCGC 1 cut(s) 120
AsuC2I CCSGG 1 cut(s) 157
AsuHPI GGTGA 1 cut(s) 200
BbsI GAAGAC 1 cut(s) 137
BbvI GCAGC 3 cut(s) 7, 102, 132
BcnI CCSGG 1 cut(s) 157
BisI GCNGC 3 cut(s) 21, 116, 121
BlsI GCNGC 3 cut(s) 22, 117, 122
Bme1390I CCNGG 1 cut(s) 157
BmrFI CCNGG 1 cut(s) 157
BmsI GCATC 1 cut(s) 81
BpiI GAAGAC 1 cut(s) 137
BpuMI CCSGG 1 cut(s) 157
BseGI GGATG 1 cut(s) 72
BseXI GCAGC 3 cut(s) 7, 102, 132
BsgI GTGCAG 1 cut(s) 264
BsiSI CCGG 1 cut(s) 157
Bst4CI ACNGT 3 cut(s) 150, 182, 260
BstAPI GCANNNNNTGC 2 cut(s) 152, 193
BstF5I GGATG 1 cut(s) 72
BstHHI GCGC 1 cut(s) 120
BstMWI GCNNNNNNNGC 3 cut(s) 152, 172, 193
BstSCI CCNGG 1 cut(s) 155
BstV1I GCAGC 3 cut(s) 7, 102, 132
BstV2I GAAGAC 1 cut(s) 137
BtsCI GGATG 1 cut(s) 72
BtsIMutI CAGTG 1 cut(s) 146
CfoI GCGC 1 cut(s) 120
CviAII CATG 1 cut(s) 214
CviJI RGCY 4 cut(s) 20, 115, 175, 204
CviKI_1 RGCY 4 cut(s) 20, 115, 175, 204
FaeI CATG 1 cut(s) 217
FaiI YATR 3 cut(s) 178, 201, 215
FatI CATG 1 cut(s) 213
Fnu4HI GCNGC 3 cut(s) 21, 116, 121
FokI GGATG 1 cut(s) 59
Fsp4HI GCNGC 3 cut(s) 21, 116, 121
FspI TGCGCA 1 cut(s) 119
GlaI GCGC 1 cut(s) 119
GluI GCNGC 3 cut(s) 21, 116, 121
HapII CCGG 1 cut(s) 157
HhaI GCGC 1 cut(s) 120
Hin1II CATG 1 cut(s) 217
Hin6I GCGC 1 cut(s) 118
HinP1I GCGC 1 cut(s) 118
HinfI GANTC 1 cut(s) 38
HpaII CCGG 1 cut(s) 157
HphI GGTGA 1 cut(s) 200
Hpy188I TCNGA 1 cut(s) 269
Hpy188III TCNNGA 1 cut(s) 8
HpyCH4III ACNGT 3 cut(s) 150, 182, 260
HpyCH4V TGCA 4 cut(s) 23, 187, 196, 245
HpyF10VI GCNNNNNNNGC 3 cut(s) 152, 172, 193
Hsp92II CATG 1 cut(s) 217
HspAI GCGC 1 cut(s) 118
LpnPI CCDG 3 cut(s) 89, 153, 170
Lsp1109I GCAGC 3 cut(s) 7, 102, 132
LweI GCATC 1 cut(s) 81
MaeIII GTNAC 1 cut(s) 260
MboII GAAGA 2 cut(s) 139, 142
MfeI CAATTG 1 cut(s) 191
MluCI AATT 1 cut(s) 191
MnlI CCTC 2 cut(s) 52, 75
MseI TTAA 2 cut(s) 48, 107
MspI CCGG 1 cut(s) 157
MspR9I CCNGG 1 cut(s) 157
MunI CAATTG 1 cut(s) 191
MwoI GCNNNNNNNGC 3 cut(s) 152, 172, 193
NciI CCSGG 1 cut(s) 157
NlaIII CATG 1 cut(s) 217
NmuCI GTSAC 1 cut(s) 260
NsbI TGCGCA 1 cut(s) 119
PfeI GAWTC 1 cut(s) 38
PkrI GCNGC 3 cut(s) 22, 117, 122
SaqAI TTAA 2 cut(s) 48, 107
SatI GCNGC 3 cut(s) 21, 116, 121
ScrFI CCNGG 1 cut(s) 157
SetI ASST 1 cut(s) 206
SfaNI GCATC 1 cut(s) 81
Sse9I AATT 1 cut(s) 191
SspI AATATT 1 cut(s) 105
StyD4I CCNGG 1 cut(s) 155
TaaI ACNGT 3 cut(s) 150, 182, 260
TasI AATT 1 cut(s) 191
TfiI GAWTC 1 cut(s) 38
Tru1I TTAA 2 cut(s) 48, 107
Tru9I TTAA 2 cut(s) 48, 107
TscAI CASTG 1 cut(s) 153
TseFI GTSAC 1 cut(s) 260
TseI GCWGC 3 cut(s) 20, 115, 120
Tsp45I GTSAC 1 cut(s) 260
TspRI CASTG 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.