Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002248.1

Orthogroup ID

OG0020541

Physical Location & Seq

Genomic Coordinates Reverse (-)

39383 .. 40582

Gene Structure 1200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002248.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

atgttagtcgaggatcttgaattcttgattcttgatcatggattcatggtcagtgacggtgtgtcggatgtgtatatagttggaggacatatcagccgcagtgaaaatgacaaaggaaatgtgttttcgattccttcccgtgaatatgcagggttcaatatgtttcttgacccgttggctgcaaagactctgtttgattcctcacttaacatcacactcattcctcttggcatccagcagagagttagttatgttccaaaaatattaaaaaggctgcgcagcatcaagaagacaacaccagaagcactgtttgcccggcgattgctgtcgaggctataccgtttgcaacaattgcaccatagctatcaccacatgggaactttcttggggaaacttcttggtgcagttctcttggacggtgattctcatttgagccaaagcttcaaactcaaacacatcaaagtttttgctgatgatattgaatccagagatggggaaattttgattcatcaaaaccaaggaaaattagtcaaagtatcggacaaagtaaatcccagggcatattataaacttttcgcagaaacggcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

IU_nuc_hydro

Protein Analysis

196

Amino Acids

22.21

Weight (kDa)

9.22

Isoelectric Point (pI)

42.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020541)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0420381
rosa_multiflora	Rmu_sc0002248.1_g000006
rosa_roxburghii	Rroxscaffold_5G00363020
rosa_samantha	Rh4AG224900 Rh4CG239300 Rh4DG223400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	567
Acc16I	TGCGCA	1 cut(s)	278
AciI	CCGC	1 cut(s)	97
AclWI	GGATC	1 cut(s)	21
AcsI	RAATTY	2 cut(s)	20, 498
AfiI	CCNNNNNNNGG	1 cut(s)	492
AgsI	TTSAA	4 cut(s)	20, 157, 445, 482
AhdI	GACNNNNNGTC	1 cut(s)	61
AjnI	CCWGG	1 cut(s)	554
AluBI	AGCT	2 cut(s)	363, 441
AluI	AGCT	2 cut(s)	363, 441
AlwI	GGATC	1 cut(s)	21
ApeKI	GCWGC	3 cut(s)	179, 274, 279
ApoI	RAATTY	2 cut(s)	20, 498
AspLEI	GCGC	1 cut(s)	279
AsuC2I	CCSGG	1 cut(s)	316
AsuHPI	GGTGA	2 cut(s)	359, 431
BbsI	GAAGAC	1 cut(s)	296
BbvI	GCAGC	3 cut(s)	166, 261, 291
BccI	CCATC	1 cut(s)	485
BciT130I	CCWGG	1 cut(s)	556
BclI	TGATCA	1 cut(s)	34
BcnI	CCSGG	1 cut(s)	316
BisI	GCNGC	4 cut(s)	97, 180, 275, 280
BlsI	GCNGC	4 cut(s)	98, 181, 276, 281
Bme1390I	CCNGG	2 cut(s)	316, 556
BmeRI	GACNNNNNGTC	1 cut(s)	61
BmrFI	CCNGG	2 cut(s)	316, 556
BmsI	GCATC	2 cut(s)	240, 291
BpiI	GAAGAC	1 cut(s)	296
BpuMI	CCSGG	1 cut(s)	316
BsaJI	CCNNGG	3 cut(s)	517, 554, 555
Bsc4I	CCNNNNNNNGG	1 cut(s)	492
BseBI	CCWGG	1 cut(s)	556
BseDI	CCNNGG	3 cut(s)	517, 554, 555
BseGI	GGATG	2 cut(s)	73, 231
BseLI	CCNNNNNNNGG	1 cut(s)	492
BseXI	GCAGC	3 cut(s)	166, 261, 291
BsgI	GTGCAG	1 cut(s)	423
BsiSI	CCGG	1 cut(s)	316
BslI	CCNNNNNNNGG	1 cut(s)	492
Bsp143I	GATC	2 cut(s)	13, 34
BspACI	CCGC	1 cut(s)	97
BspPI	GGATC	1 cut(s)	21
BssECI	CCNNGG	3 cut(s)	517, 554, 555
BssMI	GATC	2 cut(s)	13, 34
BssT1I	CCWWGG	1 cut(s)	517
Bst2UI	CCWGG	1 cut(s)	556
Bst4CI	ACNGT	4 cut(s)	59, 309, 341, 419
BstAPI	GCANNNNNTGC	2 cut(s)	311, 352
BstDEI	CTNAG	1 cut(s)	588
BstF5I	GGATG	2 cut(s)	73, 231
BstHHI	GCGC	1 cut(s)	279
BstKTI	GATC	2 cut(s)	16, 37
BstMBI	GATC	2 cut(s)	13, 34
BstMWI	GCNNNNNNNGC	4 cut(s)	311, 331, 352, 584
BstNI	CCWGG	1 cut(s)	556
BstSCI	CCNGG	2 cut(s)	314, 554
BstV1I	GCAGC	3 cut(s)	166, 261, 291
BstV2I	GAAGAC	1 cut(s)	296
BstX2I	RGATCY	1 cut(s)	13
BstYI	RGATCY	1 cut(s)	13
BtsCI	GGATG	2 cut(s)	73, 231
BtsI	GCAGTG	1 cut(s)	106
BtsIMutI	CAGTG	3 cut(s)	58, 106, 305
CfoI	GCGC	1 cut(s)	279
CviAII	CATG	3 cut(s)	38, 46, 373
CviJI	RGCY	8 cut(s)	96, 179, 274, 334, 363, 435, 441, 587
CviKI_1	RGCY	8 cut(s)	96, 179, 274, 334, 363, 435, 441, 587
DdeI	CTNAG	1 cut(s)	588
DpnI	GATC	2 cut(s)	15, 36
DpnII	GATC	2 cut(s)	13, 34
DriI	GACNNNNNGTC	1 cut(s)	61
Eam1105I	GACNNNNNGTC	1 cut(s)	61
Eco130I	CCWWGG	1 cut(s)	517
EcoRI	GAATTC	1 cut(s)	20
EcoRII	CCWGG	1 cut(s)	554
EcoT14I	CCWWGG	1 cut(s)	517
ErhI	CCWWGG	1 cut(s)	517
FaeI	CATG	3 cut(s)	41, 49, 376
FatI	CATG	3 cut(s)	37, 45, 372
FbaI	TGATCA	1 cut(s)	34
Fnu4HI	GCNGC	4 cut(s)	97, 180, 275, 280
FokI	GGATG	2 cut(s)	80, 218
Fsp4HI	GCNGC	4 cut(s)	97, 180, 275, 280
FspI	TGCGCA	1 cut(s)	278
GlaI	GCGC	1 cut(s)	278
GluI	GCNGC	4 cut(s)	97, 180, 275, 280
HapII	CCGG	1 cut(s)	316
HhaI	GCGC	1 cut(s)	279
Hin1II	CATG	3 cut(s)	41, 49, 376
Hin6I	GCGC	1 cut(s)	277
HinP1I	GCGC	1 cut(s)	277
HindIII	AAGCTT	1 cut(s)	439
HinfI	GANTC	8 cut(s)	28, 42, 130, 187, 197, 422, 482, 505
HpaII	CCGG	1 cut(s)	316
HphI	GGTGA	2 cut(s)	359, 431
Hpy188I	TCNGA	2 cut(s)	67, 541
Hpy188III	TCNNGA	6 cut(s)	17, 25, 32, 167, 286, 486
HpyAV	CCTTC	1 cut(s)	144
HpyCH4III	ACNGT	4 cut(s)	59, 309, 341, 419
HpyCH4V	TGCA	5 cut(s)	149, 182, 346, 355, 404
HpyF10VI	GCNNNNNNNGC	4 cut(s)	311, 331, 352, 584
HpyF3I	CTNAG	1 cut(s)	588
Hsp92II	CATG	3 cut(s)	41, 49, 376
HspAI	GCGC	1 cut(s)	277
Ksp22I	TGATCA	1 cut(s)	34
Kzo9I	GATC	2 cut(s)	13, 34
LpnPI	CCDG	7 cut(s)	135, 248, 312, 329, 499, 541, 568
Lsp1109I	GCAGC	3 cut(s)	166, 261, 291
LweI	GCATC	2 cut(s)	240, 291
MaeIII	GTNAC	1 cut(s)	53
MalI	GATC	2 cut(s)	15, 36
MboI	GATC	2 cut(s)	13, 34
MboII	GAAGA	1 cut(s)	301
MfeI	CAATTG	1 cut(s)	350
MflI	RGATCY	1 cut(s)	13
MluCI	AATT	4 cut(s)	20, 350, 498, 524
MlyI	GAGTC	1 cut(s)	181
MmeI	TCCRAC	2 cut(s)	45, 61
MnlI	CCTC	5 cut(s)	4, 77, 211, 234, 324
MseI	TTAA	2 cut(s)	207, 266
MspI	CCGG	1 cut(s)	316
MspR9I	CCNGG	2 cut(s)	316, 556
MunI	CAATTG	1 cut(s)	350
MvaI	CCWGG	1 cut(s)	556
MwoI	GCNNNNNNNGC	4 cut(s)	311, 331, 352, 584
NciI	CCSGG	1 cut(s)	316
NdeII	GATC	2 cut(s)	13, 34
NlaIII	CATG	3 cut(s)	41, 49, 376
NmuCI	GTSAC	1 cut(s)	53
NsbI	TGCGCA	1 cut(s)	278
PasI	CCCWGGG	1 cut(s)	555
PfeI	GAWTC	7 cut(s)	28, 42, 130, 197, 422, 482, 505
PkrI	GCNGC	4 cut(s)	98, 181, 276, 281
PleI	GAGTC	1 cut(s)	181
PpsI	GAGTC	1 cut(s)	181
PsiI	TTATAA	1 cut(s)	567
Psp6I	CCWGG	1 cut(s)	554
PspGI	CCWGG	1 cut(s)	554
PsuI	RGATCY	1 cut(s)	13
SaqAI	TTAA	2 cut(s)	207, 266
SatI	GCNGC	4 cut(s)	97, 180, 275, 280
Sau3AI	GATC	2 cut(s)	13, 34
SchI	GAGTC	1 cut(s)	181
ScrFI	CCNGG	2 cut(s)	316, 556
SetI	ASST	2 cut(s)	365, 443
SfaNI	GCATC	2 cut(s)	240, 291
Sse9I	AATT	4 cut(s)	20, 350, 498, 524
SsiI	CCGC	1 cut(s)	97
SspI	AATATT	1 cut(s)	264
StyD4I	CCNGG	2 cut(s)	314, 554
StyI	CCWWGG	1 cut(s)	517
TaaI	ACNGT	4 cut(s)	59, 309, 341, 419
TaqI	TCGA	3 cut(s)	9, 128, 329
TasI	AATT	4 cut(s)	20, 350, 498, 524
TauI	GCSGC	1 cut(s)	99
TfiI	GAWTC	7 cut(s)	28, 42, 130, 197, 422, 482, 505
Tru1I	TTAA	2 cut(s)	207, 266
Tru9I	TTAA	2 cut(s)	207, 266
TscAI	CASTG	3 cut(s)	58, 106, 312
TseFI	GTSAC	1 cut(s)	53
TseI	GCWGC	3 cut(s)	179, 274, 279
Tsp45I	GTSAC	1 cut(s)	53
TspDTI	ATGAA	2 cut(s)	34, 497
TspRI	CASTG	3 cut(s)	58, 106, 312
XapI	RAATTY	2 cut(s)	20, 498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.