RchiOBHm_Chr4g0423201

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0021068
Physical Location & Seq
Reverse (-)
48816960 .. 48818576
1617 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39262

Sequence Viewer

Length: 1617 bp
ATGGCATGTTTGCTAATATCATTGGGTGAAGCAGGACGAAATACTGCTTTGCAAAGTTTTCTGCAGGATCAATACTTGAGCGAACTAGATCAAAGAGAAAGCACAGATGAAAACAATCTGAAAACTCGTCTACAAGCTTTGTGGGACGTTCCTTGGTTTTTCGGTTCATTATTTCCCCTTATTCCTGTGATTTCATCCCAGTCAACTATCCTCATCTTCTCAGCGGCTTCTATTGGAGTCTCTTCTTTCGTCTTCTGGTGGGCTCGCTCCAAATACTTCATATACAATGGAAGTCTTGCAGGCACATATGAAACCCGACAAGCTCAAATGTGCAAAACCTCGTGTCCCCTAGATGAAGAAAGAGATCAAAGAGGAGATCAGATTTGCCAAGACCACACAGAAGAGACTAGCACTGCCTCTTGTCTGGGAGACAGAGCACAAAGAAGGGAAACTTGTATAGCCACAGGAGGGAACGTCAGTACAGTACAACGAGTACAAACAATGGACCTTGCGACAATCCCGTCCCCAGTAGATGAAGAAACGCATCAAAGAGGAAGACAGATTTGTGCACAAAACACAGGAATGCCTGACACTCATTCTGTAATGGACGAAGCAGAAAGTAGGGGAATTGGCGCAGAAAAAACTCCAAGTACAAAAGAAGAATCACTATCAAGAGCTGAAATTCACACAGACACAGAAGAGGACCCCTGTTCAGCAGAAGAATCACTATCAAGAGCTGAAGTTGACACAAACACAAAACGGGACCCCTGTAGTTCAATTGAACAAGCACAAATTACAGATTATAACGAAGCAACACGAGTGAGCTATCCAGCAGAACAAACAGGAAGAGGAGAAGTTTGGACACTCGAAAAATTGAAGGAGGAACTGCCTTTTTTTAAAAAGATGTTACCTATGTGGTTTGCCTTTGTCATATACACTATGGTGGATGCAGCAGGTAGCTCTTTTTTCTTCGGGCAAATGAGTAACTTGGATGATCTCATAGGAAATTCTGCAGTGTATTTTGCAGGATTCACCTCATTTACTGCATCTGTAGTCTCATTTCTTTACGAAAAAGTTATAGCTCCAAAGAAGTGGAGACATGCTACGTTGGTAAATATTGGTTCTGCAGTGACATGTTCTCAGCTATGTTGCTTTGCTGCTTGGCTGGTTGAGGTATACAGGTTAAAATCTGTTAAGAGAAAAGGACTTGAAAATGATAATGCCACTACTGTTTCCATGAGCATCTTTCTGTTAGTTCCCCAGTTTTTCCTGTTGGGGATCATGCAAGGCCTATTGAGAACGGGTTTGGTTGATTTTTTCCATGATCAGATAAATTACGATGATAAGCTGATGAAGAGGTATGGGGAATACATCAGTGCTTTCGTCCTTGGCGTTATAAGACTGCTTACCACTCTTAATATACTGGTGCCCTTTTTTGTGTCCAAGAAAAGTTGGTTTGGTGACAATATAAACACGAGTCGCCTAGATCTGTATTTCTTTGTGTTAACACTCTGTAGTCTTGTTAACATTGGCTACTATTTGTGTGTTGCCCGCTATTATGCAACATCTAGATCACCAAATGCAATTGGAGAAGAACAACAAGAACAGAGCGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

538

Amino Acids

60.46

Weight (kDa)

4.97

Isoelectric Point (pI)

44.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021068)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g29000
rosa_chinensis RchiOBHm_Chr4g0423201
rosa_multiflora Rmu_sc0007269.1_g000012
rosa_roxburghii Rroxscaffold_5G00365350
rosa_samantha Rh4CG258900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 804, 1397
AasI GACNNNNNNGTC 1 cut(s) 520
Acc36I ACCTGC 1 cut(s) 944
AccB1I GGYRCC 1 cut(s) 1426
AccI GTMKAC 2 cut(s) 130, 1176
AciI CCGC 2 cut(s) 224, 1552
AclWI GGATC 2 cut(s) 75, 1286
AcsI RAATTY 2 cut(s) 681, 1006
AcuI CTGAAG 1 cut(s) 759
AfaI GTAC 4 cut(s) 481, 486, 495, 652
AfiI CCNNNNNNNGG 1 cut(s) 468
AflIII ACRYGT 1 cut(s) 1133
AgsI TTSAA 4 cut(s) 777, 782, 877, 1211
AleI CACNNNNGTG 1 cut(s) 941
AluBI AGCT 9 cut(s) 137, 323, 677, 737, 825, 960, 1082, 1144, 1348
AluI AGCT 9 cut(s) 137, 323, 677, 737, 825, 960, 1082, 1144, 1348
Alw21I GWGCWC 2 cut(s) 439, 571
Alw26I GTCTC 5 cut(s) 244, 398, 423, 1060, 1090
Alw44I GTGCAC 1 cut(s) 567
AlwI GGATC 2 cut(s) 75, 1286
AoxI GGCC 1 cut(s) 1288
ApaLI GTGCAC 1 cut(s) 567
ApeKI GCWGC 2 cut(s) 950, 1157
ApoI RAATTY 2 cut(s) 681, 1006
AspLEI GCGC 2 cut(s) 635, 1613
AspS9I GGNCC 3 cut(s) 505, 703, 763
AsuHPI GGTGA 4 cut(s) 38, 1024, 1472, 1566
AvaII GGWCC 3 cut(s) 505, 703, 763
BaeGI GKGCMC 2 cut(s) 571, 1431
BanI GGYRCC 1 cut(s) 1426
BanII GRGCYC 1 cut(s) 265
BauI CACGAG 3 cut(s) 340, 816, 1474
BbsI GAAGAC 2 cut(s) 244, 562
Bbv12I GWGCWC 2 cut(s) 439, 571
BbvI GCAGC 2 cut(s) 962, 1144
BclI TGATCA 1 cut(s) 1324
BcoDI GTCTC 5 cut(s) 244, 398, 423, 1060, 1090
BfaI CTAG 5 cut(s) 86, 350, 408, 1484, 1569
BfmI CTRYAG 6 cut(s) 62, 769, 1011, 1050, 1125, 1513
BfuAI ACCTGC 1 cut(s) 944
BglII AGATCT 1 cut(s) 1486
BisI GCNGC 3 cut(s) 225, 951, 1158
BlsI GCNGC 3 cut(s) 226, 952, 1159
Bme18I GGWCC 3 cut(s) 505, 703, 763
BmgT120I GGNCC 3 cut(s) 505, 703, 763
BmiI GGNNCC 4 cut(s) 705, 764, 765, 1428
BmrI ACTGGG 3 cut(s) 193, 521, 1255
BmsI GCATC 4 cut(s) 553, 937, 1055, 1251
BmuI ACTGGG 3 cut(s) 193, 521, 1255
BpiI GAAGAC 2 cut(s) 244, 562
BpuEI CTTGAG 1 cut(s) 97
BsaJI CCNNGG 2 cut(s) 152, 1387
BsaXI ACNNNNNCTCC 2 cut(s) 459, 489
Bsc4I CCNNNNNNNGG 1 cut(s) 468
Bse1I ACTGG 4 cut(s) 199, 527, 1261, 1428
BseDI CCNNGG 2 cut(s) 152, 1387
BseGI GGATG 3 cut(s) 194, 952, 997
BseLI CCNNNNNNNGG 1 cut(s) 468
BseMII CTCAG 2 cut(s) 234, 1154
BseNI ACTGG 4 cut(s) 199, 527, 1261, 1428
BseRI GAGGAG 2 cut(s) 387, 864
BseSI GKGCMC 2 cut(s) 571, 1431
BseXI GCAGC 2 cut(s) 962, 1144
BshFI GGCC 1 cut(s) 1290
BshNI GGYRCC 1 cut(s) 1426
BsiHKAI GWGCWC 2 cut(s) 439, 571
BslFI GGGAC 4 cut(s) 158, 330, 508, 776
BslI CCNNNNNNNGG 1 cut(s) 468
BsmAI GTCTC 5 cut(s) 244, 398, 423, 1060, 1090
BsmFI GGGAC 4 cut(s) 158, 330, 508, 776
BsmI GAATGC 1 cut(s) 588
BsnI GGCC 1 cut(s) 1290
Bsp1286I GDGCHC 4 cut(s) 265, 439, 571, 1431
Bsp143I GATC 9 cut(s) 67, 88, 364, 376, 994, 1278, 1324, 1486, 1571
BspACI CCGC 2 cut(s) 224, 1552
BspANI GGCC 1 cut(s) 1290
BspCNI CTCAG 2 cut(s) 233, 1153
BspLI GGNNCC 4 cut(s) 705, 764, 765, 1428
BspMAI CTGCAG 3 cut(s) 66, 1015, 1129
BspMI ACCTGC 1 cut(s) 944
BspPI GGATC 2 cut(s) 75, 1286
BspT107I GGYRCC 1 cut(s) 1426
BsrI ACTGG 4 cut(s) 199, 527, 1261, 1428
BssECI CCNNGG 2 cut(s) 152, 1387
BssMI GATC 9 cut(s) 67, 88, 364, 376, 994, 1278, 1324, 1486, 1571
BssNAI GTATAC 1 cut(s) 1177
BssSI CACGAG 3 cut(s) 340, 816, 1474
BssT1I CCWWGG 2 cut(s) 152, 1387
Bst1107I GTATAC 1 cut(s) 1177
Bst2BI CACGAG 3 cut(s) 340, 816, 1474
Bst4CI ACNGT 2 cut(s) 484, 1231
Bst6I CTCTTC 5 cut(s) 247, 396, 693, 841, 1349
BstC8I GCNNGC 3 cut(s) 265, 301, 1552
BstDEI CTNAG 2 cut(s) 220, 1140
BstF5I GGATG 3 cut(s) 194, 952, 997
BstHHI GCGC 2 cut(s) 635, 1613
BstKTI GATC 9 cut(s) 70, 91, 367, 379, 997, 1281, 1327, 1489, 1574
BstMAI GTCTC 5 cut(s) 244, 398, 423, 1060, 1090
BstMBI GATC 9 cut(s) 67, 88, 364, 376, 994, 1278, 1324, 1486, 1571
BstNSI RCATGY 3 cut(s) 9, 1103, 1137
BstSFI CTRYAG 6 cut(s) 62, 769, 1011, 1050, 1125, 1513
BstSLI GKGCMC 2 cut(s) 571, 1431
BstV1I GCAGC 2 cut(s) 962, 1144
BstV2I GAAGAC 2 cut(s) 244, 562
BstX2I RGATCY 1 cut(s) 1486
BstXI CCANNNNNNTGG 1 cut(s) 1092
BstYI RGATCY 1 cut(s) 1486
BstZ17I GTATAC 1 cut(s) 1177
BsuRI GGCC 1 cut(s) 1290
BtsCI GGATG 3 cut(s) 194, 952, 997
BtsI GCAGTG 3 cut(s) 411, 1020, 1134
BtsIMutI CAGTG 4 cut(s) 411, 1020, 1134, 1381
BveI ACCTGC 1 cut(s) 944
Cac8I GCNNGC 3 cut(s) 265, 301, 1552
CfoI GCGC 2 cut(s) 635, 1613
Cfr13I GGNCC 3 cut(s) 505, 703, 763
Csp6I GTAC 4 cut(s) 480, 485, 494, 651
CspCI CAANNNNNGTGG 2 cut(s) 122, 157
CviAII CATG 7 cut(s) 6, 1100, 1134, 1237, 1282, 1322, 1614
CviQI GTAC 4 cut(s) 480, 485, 494, 651
DdeI CTNAG 2 cut(s) 220, 1140
DpnI GATC 9 cut(s) 69, 90, 366, 378, 996, 1280, 1326, 1488, 1573
DpnII GATC 9 cut(s) 67, 88, 364, 376, 994, 1278, 1324, 1486, 1571
DraI TTTAAA 1 cut(s) 898
DrdI GACNNNNNNGTC 1 cut(s) 520
DseDI GACNNNNNNGTC 1 cut(s) 520
Eam1104I CTCTTC 5 cut(s) 247, 396, 693, 841, 1349
EarI CTCTTC 5 cut(s) 247, 396, 693, 841, 1349
Eco130I CCWWGG 2 cut(s) 152, 1387
Eco147I AGGCCT 1 cut(s) 1290
Eco24I GRGCYC 1 cut(s) 265
Eco47I GGWCC 3 cut(s) 505, 703, 763
Eco57I CTGAAG 1 cut(s) 759
EcoO109I RGGNCCY 2 cut(s) 703, 763
EcoT14I CCWWGG 2 cut(s) 152, 1387
EcoT38I GRGCYC 1 cut(s) 265
ErhI CCWWGG 2 cut(s) 152, 1387
FaeI CATG 7 cut(s) 9, 1103, 1137, 1240, 1285, 1325, 1617
FalI AAGNNNNNCTT 2 cut(s) 436, 468
FaqI GGGAC 4 cut(s) 158, 330, 508, 776
FatI CATG 7 cut(s) 5, 1099, 1133, 1236, 1281, 1321, 1613
FauI CCCGC 1 cut(s) 1559
FauNDI CATATG 1 cut(s) 307
FbaI TGATCA 1 cut(s) 1324
FblI GTMKAC 2 cut(s) 130, 1176
Fnu4HI GCNGC 3 cut(s) 225, 951, 1158
FokI GGATG 3 cut(s) 181, 959, 1004
FriOI GRGCYC 1 cut(s) 265
Fsp4HI GCNGC 3 cut(s) 225, 951, 1158
FspBI CTAG 5 cut(s) 86, 350, 408, 1484, 1569
GlaI GCGC 2 cut(s) 634, 1612
GluI GCNGC 3 cut(s) 225, 951, 1158
HaeIII GGCC 1 cut(s) 1290
HhaI GCGC 2 cut(s) 635, 1613
Hin1II CATG 7 cut(s) 9, 1103, 1137, 1240, 1285, 1325, 1617
Hin6I GCGC 2 cut(s) 633, 1611
HinP1I GCGC 2 cut(s) 633, 1611
HincII GTYRAC 4 cut(s) 204, 745, 1506, 1525
HindII GTYRAC 4 cut(s) 204, 745, 1506, 1525
HindIII AAGCTT 1 cut(s) 135
HinfI GANTC 5 cut(s) 237, 662, 722, 1029, 1477
HpaI GTTAAC 2 cut(s) 1506, 1525
HphI GGTGA 4 cut(s) 38, 1024, 1472, 1566
Hpy166II GTNNAC 7 cut(s) 131, 204, 569, 745, 1177, 1506, 1525
Hpy188I TCNGA 3 cut(s) 120, 381, 1329
Hpy188III TCNNGA 3 cut(s) 672, 732, 1569
Hpy8I GTNNAC 7 cut(s) 131, 204, 569, 745, 1177, 1506, 1525
HpyAV CCTTC 2 cut(s) 438, 871
HpyCH4III ACNGT 2 cut(s) 484, 1231
HpyCH4IV ACGT 3 cut(s) 147, 474, 1106
HpyF3I CTNAG 2 cut(s) 220, 1140
HpySE526I ACGT 3 cut(s) 147, 474, 1106
Hsp92II CATG 7 cut(s) 9, 1103, 1137, 1240, 1285, 1325, 1617
HspAI GCGC 2 cut(s) 633, 1611
KflI GGGWCCC 1 cut(s) 763
Ksp22I TGATCA 1 cut(s) 1324
KspAI GTTAAC 2 cut(s) 1506, 1525
Kzo9I GATC 9 cut(s) 67, 88, 364, 376, 994, 1278, 1324, 1486, 1571
LmnI GCTCC 2 cut(s) 272, 1087
Lsp1109I GCAGC 2 cut(s) 962, 1144
LweI GCATC 4 cut(s) 553, 937, 1055, 1251
MaeI CTAG 5 cut(s) 86, 350, 408, 1484, 1569
MaeII ACGT 3 cut(s) 147, 474, 1106
MaeIII GTNAC 4 cut(s) 906, 983, 1129, 1460
MalI GATC 9 cut(s) 69, 90, 366, 378, 996, 1280, 1326, 1488, 1573
MboI GATC 9 cut(s) 67, 88, 364, 376, 994, 1278, 1324, 1486, 1571
MfeI CAATTG 2 cut(s) 777, 1584
MflI RGATCY 1 cut(s) 1486
MhlI GDGCHC 4 cut(s) 265, 439, 571, 1431
MluCI AATT 8 cut(s) 627, 681, 777, 792, 872, 1006, 1333, 1584
MlyI GAGTC 2 cut(s) 246, 1486
MseI TTAA 6 cut(s) 897, 1184, 1194, 1416, 1505, 1524
MslI CAYNNNNRTG 2 cut(s) 581, 941
MspA1I CMGCKG 1 cut(s) 224
MunI CAATTG 2 cut(s) 777, 1584
Mva1269I GAATGC 1 cut(s) 588
NdeI CATATG 1 cut(s) 307
NdeII GATC 9 cut(s) 67, 88, 364, 376, 994, 1278, 1324, 1486, 1571
NlaIII CATG 7 cut(s) 9, 1103, 1137, 1240, 1285, 1325, 1617
NlaIV GGNNCC 4 cut(s) 705, 764, 765, 1428
NmuCI GTSAC 2 cut(s) 1129, 1460
NspI RCATGY 3 cut(s) 9, 1103, 1137
OliI CACNNNNGTG 1 cut(s) 941
PceI AGGCCT 1 cut(s) 1290
PciI ACATGT 1 cut(s) 1133
PcsI WCGNNNNNNNCGW 1 cut(s) 1389
PctI GAATGC 1 cut(s) 588
PfeI GAWTC 3 cut(s) 662, 722, 1029
PkrI GCNGC 3 cut(s) 226, 952, 1159
PleI GAGTC 2 cut(s) 245, 1485
PpsI GAGTC 2 cut(s) 245, 1485
PpuMI RGGWCCY 2 cut(s) 703, 763
PscI ACATGT 1 cut(s) 1133
PsiI TTATAA 2 cut(s) 804, 1397
Psp5II RGGWCCY 2 cut(s) 703, 763
PspN4I GGNNCC 4 cut(s) 705, 764, 765, 1428
PspPI GGNCC 3 cut(s) 505, 703, 763
PspPPI RGGWCCY 2 cut(s) 703, 763
PstI CTGCAG 3 cut(s) 66, 1015, 1129
PsuI RGATCY 1 cut(s) 1486
RsaI GTAC 4 cut(s) 481, 486, 495, 652
RsaNI GTAC 4 cut(s) 480, 485, 494, 651
RseI CAYNNNNRTG 2 cut(s) 581, 941
SaqAI TTAA 6 cut(s) 897, 1184, 1194, 1416, 1505, 1524
SatI GCNGC 3 cut(s) 225, 951, 1158
Sau3AI GATC 9 cut(s) 67, 88, 364, 376, 994, 1278, 1324, 1486, 1571
Sau96I GGNCC 3 cut(s) 505, 703, 763
SchI GAGTC 2 cut(s) 246, 1486
SduI GDGCHC 4 cut(s) 265, 439, 571, 1431
SfaNI GCATC 4 cut(s) 553, 937, 1055, 1251
SfcI CTRYAG 6 cut(s) 62, 769, 1011, 1050, 1125, 1513
SinI GGWCC 3 cut(s) 505, 703, 763
SmiMI CAYNNNNRTG 2 cut(s) 581, 941
SmlI CTYRAG 1 cut(s) 76
SmoI CTYRAG 1 cut(s) 76
Sse9I AATT 8 cut(s) 627, 681, 777, 792, 872, 1006, 1333, 1584
SseBI AGGCCT 1 cut(s) 1290
SsiI CCGC 2 cut(s) 224, 1552
SspI AATATT 1 cut(s) 1117
SspMI CTAG 5 cut(s) 86, 350, 408, 1484, 1569
StuI AGGCCT 1 cut(s) 1290
StyI CCWWGG 2 cut(s) 152, 1387
TaaI ACNGT 2 cut(s) 484, 1231
TaiI ACGT 3 cut(s) 150, 477, 1109
TaqI TCGA 1 cut(s) 867
TasI AATT 8 cut(s) 627, 681, 777, 792, 872, 1006, 1333, 1584
TatI WGTACW 4 cut(s) 479, 484, 493, 650
TauI GCSGC 1 cut(s) 227
TfiI GAWTC 3 cut(s) 662, 722, 1029
Tru1I TTAA 6 cut(s) 897, 1184, 1194, 1416, 1505, 1524
Tru9I TTAA 6 cut(s) 897, 1184, 1194, 1416, 1505, 1524
TscAI CASTG 4 cut(s) 418, 1020, 1134, 1381
TseFI GTSAC 2 cut(s) 1129, 1460
TseI GCWGC 2 cut(s) 950, 1157
Tsp45I GTSAC 2 cut(s) 1129, 1460
TspDTI ATGAA 8 cut(s) 123, 156, 183, 268, 324, 369, 549, 1367
TspRI CASTG 4 cut(s) 418, 1020, 1134, 1381
VneI GTGCAC 1 cut(s) 567
VpaK11BI GGWCC 3 cut(s) 505, 703, 763
XapI RAATTY 2 cut(s) 681, 1006
XbaI TCTAGA 1 cut(s) 1568
XceI RCATGY 3 cut(s) 9, 1103, 1137
XmiI GTMKAC 2 cut(s) 130, 1176
XspI CTAG 5 cut(s) 86, 350, 408, 1484, 1569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.