Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0021068

Physical Location & Seq

Genomic Coordinates Reverse (-)

51314272 .. 51320488

Gene Structure 6217 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG258900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGATCATCATTACAAATTGATTATCTCCACAAATATTGCCTATGTTCTTTCAACTATCCTCATCTTCTCAGCGGCTTCTATTGGAGTCTCTTCTTTCGTCTTCTGGTGGGCTCGCTCCAAATACTTCATATACAATGGAAGTCTTGCAGGCACATATGAAACCCGACAAGCTCAAACGTGCAAAACCTCGTGTCCCCTAGATGAAGAAAGAGATCAAAGAGGAGATCAGATTTGCCAAGACGACACAAAAGAGACTATCACTACCTCTTGTCTAGGAGACAGAGCACAAAGAAGGGAAACTTGTATAGCCACAGGAGGGAACGTCAGTACAGTACAACGAGTACAAACAATGGACCTAGCGACAATCCCGTCCCCAGTAGATGAAGAAACGCATCAAAGAGGAAGACAGAACTGTGCACAAAACACAGGAATGCCTGACACTCATTCTGTAATGGACGAAGCAGAAAGTAGGGGAATTGGCGCAGAAAAAACTCCAAGTACAAAAGAAGAATCACTATCAAGAGCTGAAGTTGACACAAACACAAAACGGGACCCCTGTAGTTCAATTGAACAAGCACAAGTACAGAGTCTAACGAAGCAACGAGTGAGCTATCCAGCAGAACAAACAGGAAGAGGAGAAGTTTGGACACTCGAAAAATTGAAGGAGGAACTGCCTTTTTTTAAAAAGATGTTACCTATGTGGTTTGCCTTTGTCATATACACTATGGTGGATGCAGCAGGTAGCTCTTTTTTCTTCGGGCAAATGAGTAACTTGGATGATCTCATAGGAAATTCTGCAGTTTATTTTGCAGGATTCACCTCATTTACTGCATCTGTAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

281

Amino Acids

31.31

Weight (kDa)

5.13

Isoelectric Point (pI)

36.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021068)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g29000
rosa_chinensis	RchiOBHm_Chr4g0423201
rosa_multiflora	Rmu_sc0007269.1_g000012
rosa_roxburghii	Rroxscaffold_5G00365350
rosa_samantha	Rh4CG258900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	370
Acc36I	ACCTGC	1 cut(s)	731
AciI	CCGC	1 cut(s)	74
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	793
AcuI	CTGAAG	1 cut(s)	549
AfaI	GTAC	5 cut(s)	331, 336, 345, 502, 585
AfiI	CCNNNNNNNGG	1 cut(s)	318
AgsI	TTSAA	4 cut(s)	54, 567, 572, 664
AleI	CACNNNNGTG	1 cut(s)	728
AluBI	AGCT	4 cut(s)	173, 527, 612, 747
AluI	AGCT	4 cut(s)	173, 527, 612, 747
Alw21I	GWGCWC	2 cut(s)	289, 421
Alw26I	GTCTC	3 cut(s)	94, 248, 273
Alw44I	GTGCAC	1 cut(s)	417
AlwI	GGATC	1 cut(s)	12
ApaLI	GTGCAC	1 cut(s)	417
ApeKI	GCWGC	1 cut(s)	737
ApoI	RAATTY	1 cut(s)	793
AspLEI	GCGC	1 cut(s)	485
AspS9I	GGNCC	2 cut(s)	355, 553
AsuHPI	GGTGA	1 cut(s)	811
AvaII	GGWCC	2 cut(s)	355, 553
BaeGI	GKGCMC	1 cut(s)	421
BanII	GRGCYC	1 cut(s)	115
BauI	CACGAG	1 cut(s)	190
BbsI	GAAGAC	2 cut(s)	94, 412
Bbv12I	GWGCWC	2 cut(s)	289, 421
BbvI	GCAGC	1 cut(s)	749
BcoDI	GTCTC	3 cut(s)	94, 248, 273
BfaI	CTAG	3 cut(s)	200, 275, 359
BfmI	CTRYAG	3 cut(s)	559, 798, 837
BfuAI	ACCTGC	1 cut(s)	731
BisI	GCNGC	2 cut(s)	75, 738
BlsI	GCNGC	2 cut(s)	76, 739
Bme18I	GGWCC	2 cut(s)	355, 553
BmgT120I	GGNCC	2 cut(s)	355, 553
BmiI	GGNNCC	2 cut(s)	554, 555
BmrI	ACTGGG	1 cut(s)	371
BmsI	GCATC	3 cut(s)	403, 724, 842
BmuI	ACTGGG	1 cut(s)	371
BpiI	GAAGAC	2 cut(s)	94, 412
BsaXI	ACNNNNNCTCC	2 cut(s)	309, 339
Bsc4I	CCNNNNNNNGG	1 cut(s)	318
Bse1I	ACTGG	1 cut(s)	377
BseGI	GGATG	2 cut(s)	739, 784
BseLI	CCNNNNNNNGG	1 cut(s)	318
BseMII	CTCAG	1 cut(s)	84
BseNI	ACTGG	1 cut(s)	377
BseRI	GAGGAG	2 cut(s)	237, 651
BseSI	GKGCMC	1 cut(s)	421
BseXI	GCAGC	1 cut(s)	749
BsiHKAI	GWGCWC	2 cut(s)	289, 421
BslFI	GGGAC	3 cut(s)	180, 358, 566
BslI	CCNNNNNNNGG	1 cut(s)	318
BsmAI	GTCTC	3 cut(s)	94, 248, 273
BsmFI	GGGAC	3 cut(s)	180, 358, 566
BsmI	GAATGC	1 cut(s)	438
Bsp1286I	GDGCHC	3 cut(s)	115, 289, 421
Bsp143I	GATC	4 cut(s)	4, 214, 226, 781
BspACI	CCGC	1 cut(s)	74
BspCNI	CTCAG	1 cut(s)	83
BspLI	GGNNCC	2 cut(s)	554, 555
BspMAI	CTGCAG	1 cut(s)	802
BspMI	ACCTGC	1 cut(s)	731
BspPI	GGATC	1 cut(s)	12
BsrI	ACTGG	1 cut(s)	377
BssMI	GATC	4 cut(s)	4, 214, 226, 781
BssSI	CACGAG	1 cut(s)	190
Bst2BI	CACGAG	1 cut(s)	190
Bst4CI	ACNGT	2 cut(s)	334, 416
Bst6I	CTCTTC	2 cut(s)	97, 628
BstC8I	GCNNGC	2 cut(s)	115, 151
BstDEI	CTNAG	1 cut(s)	70
BstF5I	GGATG	2 cut(s)	739, 784
BstHHI	GCGC	1 cut(s)	485
BstKTI	GATC	4 cut(s)	7, 217, 229, 784
BstMAI	GTCTC	3 cut(s)	94, 248, 273
BstMBI	GATC	4 cut(s)	4, 214, 226, 781
BstSFI	CTRYAG	3 cut(s)	559, 798, 837
BstSLI	GKGCMC	1 cut(s)	421
BstV1I	GCAGC	1 cut(s)	749
BstV2I	GAAGAC	2 cut(s)	94, 412
BtsCI	GGATG	2 cut(s)	739, 784
BveI	ACCTGC	1 cut(s)	731
Cac8I	GCNNGC	2 cut(s)	115, 151
CfoI	GCGC	1 cut(s)	485
Cfr13I	GGNCC	2 cut(s)	355, 553
Csp6I	GTAC	5 cut(s)	330, 335, 344, 501, 584
CspCI	CAANNNNNGTGG	2 cut(s)	19, 54
CviJI	RGCY	7 cut(s)	77, 113, 173, 311, 527, 612, 747
CviKI_1	RGCY	7 cut(s)	77, 113, 173, 311, 527, 612, 747
CviQI	GTAC	5 cut(s)	330, 335, 344, 501, 584
DdeI	CTNAG	1 cut(s)	70
DpnI	GATC	4 cut(s)	6, 216, 228, 783
DpnII	GATC	4 cut(s)	4, 214, 226, 781
DraI	TTTAAA	1 cut(s)	685
DrdI	GACNNNNNNGTC	1 cut(s)	370
DseDI	GACNNNNNNGTC	1 cut(s)	370
Eam1104I	CTCTTC	2 cut(s)	97, 628
EarI	CTCTTC	2 cut(s)	97, 628
Eco24I	GRGCYC	1 cut(s)	115
Eco47I	GGWCC	2 cut(s)	355, 553
Eco57I	CTGAAG	1 cut(s)	549
EcoO109I	RGGNCCY	1 cut(s)	553
EcoT38I	GRGCYC	1 cut(s)	115
FalI	AAGNNNNNCTT	2 cut(s)	286, 318
FaqI	GGGAC	3 cut(s)	180, 358, 566
FauNDI	CATATG	1 cut(s)	157
Fnu4HI	GCNGC	2 cut(s)	75, 738
FokI	GGATG	2 cut(s)	746, 791
FriOI	GRGCYC	1 cut(s)	115
Fsp4HI	GCNGC	2 cut(s)	75, 738
FspBI	CTAG	3 cut(s)	200, 275, 359
GlaI	GCGC	1 cut(s)	484
GluI	GCNGC	2 cut(s)	75, 738
HhaI	GCGC	1 cut(s)	485
Hin6I	GCGC	1 cut(s)	483
HinP1I	GCGC	1 cut(s)	483
HincII	GTYRAC	1 cut(s)	535
HindII	GTYRAC	1 cut(s)	535
HinfI	GANTC	4 cut(s)	87, 512, 589, 816
HphI	GGTGA	1 cut(s)	811
Hpy166II	GTNNAC	2 cut(s)	419, 535
Hpy188I	TCNGA	2 cut(s)	231, 845
Hpy188III	TCNNGA	1 cut(s)	522
Hpy8I	GTNNAC	2 cut(s)	419, 535
HpyAV	CCTTC	2 cut(s)	288, 658
HpyCH4III	ACNGT	2 cut(s)	334, 416
HpyCH4IV	ACGT	2 cut(s)	179, 324
HpyCH4V	TGCA	7 cut(s)	149, 183, 419, 737, 800, 812, 833
HpyF3I	CTNAG	1 cut(s)	70
HpySE526I	ACGT	2 cut(s)	179, 324
HspAI	GCGC	1 cut(s)	483
KflI	GGGWCCC	1 cut(s)	553
Kzo9I	GATC	4 cut(s)	4, 214, 226, 781
LmnI	GCTCC	1 cut(s)	122
Lsp1109I	GCAGC	1 cut(s)	749
LweI	GCATC	3 cut(s)	403, 724, 842
MaeI	CTAG	3 cut(s)	200, 275, 359
MaeII	ACGT	2 cut(s)	179, 324
MaeIII	GTNAC	2 cut(s)	693, 770
MalI	GATC	4 cut(s)	6, 216, 228, 783
MboI	GATC	4 cut(s)	4, 214, 226, 781
MboII	GAAGA	9 cut(s)	58, 84, 94, 218, 398, 417, 521, 645, 748
MfeI	CAATTG	1 cut(s)	567
MhlI	GDGCHC	3 cut(s)	115, 289, 421
MluCI	AATT	5 cut(s)	17, 477, 567, 659, 793
MlyI	GAGTC	2 cut(s)	96, 598
MnlI	CCTC	9 cut(s)	71, 199, 215, 277, 311, 395, 629, 661, 832
MseI	TTAA	1 cut(s)	684
MslI	CAYNNNNRTG	2 cut(s)	431, 728
MspA1I	CMGCKG	1 cut(s)	74
MunI	CAATTG	1 cut(s)	567
Mva1269I	GAATGC	1 cut(s)	438
NdeI	CATATG	1 cut(s)	157
NdeII	GATC	4 cut(s)	4, 214, 226, 781
NlaIV	GGNNCC	2 cut(s)	554, 555
OliI	CACNNNNGTG	1 cut(s)	728
PctI	GAATGC	1 cut(s)	438
PfeI	GAWTC	2 cut(s)	512, 816
PkrI	GCNGC	2 cut(s)	76, 739
PleI	GAGTC	2 cut(s)	95, 597
PpsI	GAGTC	2 cut(s)	95, 597
PpuMI	RGGWCCY	1 cut(s)	553
Psp5II	RGGWCCY	1 cut(s)	553
PspN4I	GGNNCC	2 cut(s)	554, 555
PspPI	GGNCC	2 cut(s)	355, 553
PspPPI	RGGWCCY	1 cut(s)	553
PstI	CTGCAG	1 cut(s)	802
RsaI	GTAC	5 cut(s)	331, 336, 345, 502, 585
RsaNI	GTAC	5 cut(s)	330, 335, 344, 501, 584
RseI	CAYNNNNRTG	2 cut(s)	431, 728
SaqAI	TTAA	1 cut(s)	684
SatI	GCNGC	2 cut(s)	75, 738
Sau3AI	GATC	4 cut(s)	4, 214, 226, 781
Sau96I	GGNCC	2 cut(s)	355, 553
SchI	GAGTC	2 cut(s)	96, 598
SduI	GDGCHC	3 cut(s)	115, 289, 421
SfaNI	GCATC	3 cut(s)	403, 724, 842
SfcI	CTRYAG	3 cut(s)	559, 798, 837
SinI	GGWCC	2 cut(s)	355, 553
SmiMI	CAYNNNNRTG	2 cut(s)	431, 728
Sse9I	AATT	5 cut(s)	17, 477, 567, 659, 793
SsiI	CCGC	1 cut(s)	74
SspI	AATATT	1 cut(s)	37
SspMI	CTAG	3 cut(s)	200, 275, 359
TaaI	ACNGT	2 cut(s)	334, 416
TaiI	ACGT	2 cut(s)	182, 327
TaqI	TCGA	1 cut(s)	654
TasI	AATT	5 cut(s)	17, 477, 567, 659, 793
TatI	WGTACW	5 cut(s)	329, 334, 343, 500, 583
TauI	GCSGC	1 cut(s)	77
TfiI	GAWTC	2 cut(s)	512, 816
Tru1I	TTAA	1 cut(s)	684
Tru9I	TTAA	1 cut(s)	684
TseI	GCWGC	1 cut(s)	737
TspDTI	ATGAA	4 cut(s)	118, 174, 219, 399
VneI	GTGCAC	1 cut(s)	417
VpaK11BI	GGWCC	2 cut(s)	355, 553
XapI	RAATTY	1 cut(s)	793
XspI	CTAG	3 cut(s)	200, 275, 359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.