Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017548

Physical Location & Seq

Genomic Coordinates Reverse (-)

58301167 .. 58302243

Gene Structure 1077 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40301

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

ATGCATTTACTCCGTATCTTTTCTTTGATCCATATCTACTTTTCATTTTGGTTGGGACTGGTAGTCACTAATGATCATTTACCTGTTGTAAGGGCGGACAGATATGATAAATTCTGCCCTTTCTACAAGTCTGTTTGGATGATGCGGAATATCATCCATTTCCTTAATTTAGCAAATCAGGAACCAATATTCGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0002020 GO:0003674 GO:0003824 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006970 GO:0006996 GO:0007030 GO:0007275 GO:0008150 GO:0008324 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009555 GO:0009628 GO:0009651 GO:0009941 GO:0009987 GO:0010256 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0019899 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030054 GO:0030312 GO:0031090 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0034220 GO:0036442 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0046961 GO:0048046 GO:0048229 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071840 GO:0071944 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

ATP-synt_ab ATP-synt_ab_N ATP-synt_ab_Xtn

Protein Analysis

65

Amino Acids

7.94

Weight (kDa)

7.98

Isoelectric Point (pI)

61.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017548)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16820 AT1G16820 AT1G16820 AT1G16820
prunus_persica	Prupe.1G117300_v2.0.a1 Prupe.1G384300_v2.0.a1 Prupe.8G171300_v2.0.a1 Prupe.8G172100_v2.0.a1
pyrus_communis	pycom13g13130
rosa_chinensis	RchiOBHm_Chr1g0336251 RchiOBHm_Chr4g0426951 RchiOBHm_Chr4g0434561

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	95, 145
AclWI	GGATC	1 cut(s)	22
AcsI	RAATTY	1 cut(s)	110
AhdI	GACNNNNNGTC	1 cut(s)	62
AlwI	GGATC	1 cut(s)	22
ApoI	RAATTY	1 cut(s)	110
BclI	TGATCA	1 cut(s)	73
BmeRI	GACNNNNNGTC	1 cut(s)	62
BmiI	GGNNCC	1 cut(s)	183
BmsI	GCATC	1 cut(s)	132
BsaBI	GATNNNNATC	1 cut(s)	32
Bse1I	ACTGG	1 cut(s)	63
Bse8I	GATNNNNATC	1 cut(s)	32
BseGI	GGATG	2 cut(s)	144, 153
BseJI	GATNNNNATC	1 cut(s)	32
BseNI	ACTGG	1 cut(s)	63
BslFI	GGGAC	1 cut(s)	69
BsmFI	GGGAC	1 cut(s)	69
Bsp143I	GATC	2 cut(s)	27, 73
BspACI	CCGC	2 cut(s)	95, 145
BspLI	GGNNCC	1 cut(s)	183
BspPI	GGATC	1 cut(s)	22
BsrI	ACTGG	1 cut(s)	63
BssMI	GATC	2 cut(s)	27, 73
BstF5I	GGATG	2 cut(s)	144, 153
BstKTI	GATC	2 cut(s)	30, 76
BstMBI	GATC	2 cut(s)	27, 73
BtsCI	GGATG	2 cut(s)	144, 153
DpnI	GATC	2 cut(s)	29, 75
DpnII	GATC	2 cut(s)	27, 73
DriI	GACNNNNNGTC	1 cut(s)	62
Eam1105I	GACNNNNNGTC	1 cut(s)	62
EciI	GGCGGA	1 cut(s)	110
EcoT22I	ATGCAT	1 cut(s)	6
FaiI	YATR	2 cut(s)	33, 105
FaqI	GGGAC	1 cut(s)	69
FbaI	TGATCA	1 cut(s)	73
FokI	GGATG	2 cut(s)	140, 151
Hpy188III	TCNNGA	1 cut(s)	179
HpyCH4V	TGCA	1 cut(s)	4
Ksp22I	TGATCA	1 cut(s)	73
Kzo9I	GATC	2 cut(s)	27, 73
LpnPI	CCDG	3 cut(s)	44, 96, 164
LweI	GCATC	1 cut(s)	132
MaeIII	GTNAC	1 cut(s)	64
MalI	GATC	2 cut(s)	29, 75
MboI	GATC	2 cut(s)	27, 73
MluCI	AATT	2 cut(s)	110, 166
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	165, 196
NdeII	GATC	2 cut(s)	27, 73
NlaIV	GGNNCC	1 cut(s)	183
NmuCI	GTSAC	1 cut(s)	64
NsiI	ATGCAT	1 cut(s)	6
PspN4I	GGNNCC	1 cut(s)	183
SaqAI	TTAA	2 cut(s)	165, 196
Sau3AI	GATC	2 cut(s)	27, 73
SetI	ASST	1 cut(s)	85
SfaNI	GCATC	1 cut(s)	132
SgeI	CNNG	4 cut(s)	71, 95, 139, 191
Sse9I	AATT	2 cut(s)	110, 166
SsiI	CCGC	2 cut(s)	95, 145
SspI	AATATT	1 cut(s)	189
TaqI	TCGA	1 cut(s)	192
TasI	AATT	2 cut(s)	110, 166
Tru1I	TTAA	2 cut(s)	165, 196
Tru9I	TTAA	2 cut(s)	165, 196
TseFI	GTSAC	1 cut(s)	64
Tsp45I	GTSAC	1 cut(s)	64
TspDTI	ATGAA	1 cut(s)	33
XapI	RAATTY	1 cut(s)	110
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.