RchiOBHm_Chr4g0444401

Belongs to the SecY SEC61-alpha family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0021396
Physical Location & Seq
Reverse (-)
65148893 .. 65149644
752 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41209

Sequence Viewer

Length: 330 bp
ATGCTCACAGCTTGTGCAATGTTGTCAAGAACTTGGGTTTCTGGTTCTTCCACCCGAGATGCAGCAAAGAAGCTTAGGGAACAAAACATTGCAATGTCTGGACATAGAGTTTCAAACTTGAACAAGAAACTTAATTGTTGCGTACCTACTACGGCTGCGTTTGGAGGAATTTGCATTGGTGCTTGGACTCTTCTTGCGGATTCCATGGGAGCATCGGCACAGGTTCTGGGATTTTGCTTGCTTTTACCATCATATATCAACAGTTTGAGACATATCATAAAGAGTGGACTGTACTTTTTTCGAATTTGTAACTTCTGTAACTTCTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110
Pfam Domains
Protein Families
Plug_translocon SecY

Protein Analysis

109

Amino Acids

11.96

Weight (kDa)

9.5

Isoelectric Point (pI)

35.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SecY PF00344 7 - 80 6e-07 SecY
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021396)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0444401
rosa_laevigata RLG00000005834
rosa_roxburghii Rroxscaffold_5G00384930
rosa_samantha Rh4CG438700 Rh4DG419700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 197
AcsI RAATTY 2 cut(s) 168, 303
AfaI GTAC 2 cut(s) 144, 293
AgsI TTSAA 2 cut(s) 114, 121
AluBI AGCT 2 cut(s) 11, 73
AluI AGCT 2 cut(s) 11, 73
Alw26I GTCTC 1 cut(s) 262
AlwNI CAGNNNCTG 1 cut(s) 226
Ama87I CYCGRG 1 cut(s) 54
ApeKI GCWGC 2 cut(s) 62, 155
ApoI RAATTY 2 cut(s) 168, 303
AsuII TTCGAA 1 cut(s) 301
AvaI CYCGRG 1 cut(s) 54
BbvI GCAGC 2 cut(s) 74, 142
BccI CCATC 1 cut(s) 256
BceAI ACGGC 1 cut(s) 168
BcoDI GTCTC 1 cut(s) 262
BisI GCNGC 2 cut(s) 63, 156
BlsI GCNGC 2 cut(s) 64, 157
BmeT110I CYCGRG 1 cut(s) 54
BmsI GCATC 2 cut(s) 49, 221
Bpu10I CCTNAGC 1 cut(s) 74
Bpu14I TTCGAA 1 cut(s) 301
BsaJI CCNNGG 1 cut(s) 204
Bse3DI GCAATG 3 cut(s) 24, 87, 99
BseDI CCNNGG 1 cut(s) 204
BseMI GCAATG 3 cut(s) 24, 87, 99
BseXI GCAGC 2 cut(s) 74, 142
BsiHKCI CYCGRG 1 cut(s) 54
BsmAI GTCTC 1 cut(s) 262
BsoBI CYCGRG 1 cut(s) 54
Bsp119I TTCGAA 1 cut(s) 301
Bsp19I CCATGG 1 cut(s) 204
BspACI CCGC 1 cut(s) 197
BspT104I TTCGAA 1 cut(s) 301
BsrDI GCAATG 3 cut(s) 24, 87, 99
BssECI CCNNGG 1 cut(s) 204
BssT1I CCWWGG 1 cut(s) 204
Bst4CI ACNGT 2 cut(s) 263, 291
Bst6I CTCTTC 1 cut(s) 195
BstBI TTCGAA 1 cut(s) 301
BstC8I GCNNGC 1 cut(s) 239
BstDEI CTNAG 1 cut(s) 74
BstDSI CCRYGG 1 cut(s) 204
BstMAI GTCTC 1 cut(s) 262
BstV1I GCAGC 2 cut(s) 74, 142
BtgI CCRYGG 1 cut(s) 204
Cac8I GCNNGC 1 cut(s) 239
CaiI CAGNNNCTG 1 cut(s) 226
Csp6I GTAC 2 cut(s) 143, 292
CviAII CATG 1 cut(s) 205
CviJI RGCY 3 cut(s) 11, 73, 155
CviKI_1 RGCY 3 cut(s) 11, 73, 155
CviQI GTAC 2 cut(s) 143, 292
DdeI CTNAG 1 cut(s) 74
Eam1104I CTCTTC 1 cut(s) 195
EarI CTCTTC 1 cut(s) 195
Eco130I CCWWGG 1 cut(s) 204
Eco88I CYCGRG 1 cut(s) 54
EcoT14I CCWWGG 1 cut(s) 204
ErhI CCWWGG 1 cut(s) 204
FaeI CATG 1 cut(s) 208
FaiI YATR 6 cut(s) 105, 206, 253, 255, 273, 278
FatI CATG 1 cut(s) 204
Fnu4HI GCNGC 2 cut(s) 63, 156
Fsp4HI GCNGC 2 cut(s) 63, 156
GluI GCNGC 2 cut(s) 63, 156
Hin1II CATG 1 cut(s) 208
HindIII AAGCTT 1 cut(s) 71
HinfI GANTC 2 cut(s) 187, 200
Hpy166II GTNNAC 1 cut(s) 287
Hpy188III TCNNGA 2 cut(s) 27, 99
Hpy8I GTNNAC 1 cut(s) 287
HpyCH4III ACNGT 2 cut(s) 263, 291
HpyCH4V TGCA 4 cut(s) 17, 62, 92, 174
HpyF3I CTNAG 1 cut(s) 74
Hsp92II CATG 1 cut(s) 208
LmnI GCTCC 1 cut(s) 209
LpnPI CCDG 5 cut(s) 27, 84, 206, 212, 310
Lsp1109I GCAGC 2 cut(s) 74, 142
LweI GCATC 2 cut(s) 49, 221
MaeIII GTNAC 2 cut(s) 308, 317
MboII GAAGA 2 cut(s) 39, 182
MluCI AATT 3 cut(s) 133, 168, 303
MlyI GAGTC 1 cut(s) 181
MnlI CCTC 1 cut(s) 158
MseI TTAA 1 cut(s) 132
MslI CAYNNNNRTG 1 cut(s) 92
NcoI CCATGG 1 cut(s) 204
NlaIII CATG 1 cut(s) 208
NspV TTCGAA 1 cut(s) 301
PfeI GAWTC 1 cut(s) 200
PkrI GCNGC 2 cut(s) 64, 157
PleI GAGTC 1 cut(s) 181
PpsI GAGTC 1 cut(s) 181
PstNI CAGNNNCTG 1 cut(s) 226
RsaI GTAC 2 cut(s) 144, 293
RsaNI GTAC 2 cut(s) 143, 292
RseI CAYNNNNRTG 1 cut(s) 92
SaqAI TTAA 1 cut(s) 132
SatI GCNGC 2 cut(s) 63, 156
SchI GAGTC 1 cut(s) 181
SetI ASST 4 cut(s) 13, 75, 148, 225
SfaNI GCATC 2 cut(s) 49, 221
SfuI TTCGAA 1 cut(s) 301
SmiMI CAYNNNNRTG 1 cut(s) 92
Sse9I AATT 3 cut(s) 133, 168, 303
SsiI CCGC 1 cut(s) 197
StyI CCWWGG 1 cut(s) 204
TaaI ACNGT 2 cut(s) 263, 291
TaqI TCGA 1 cut(s) 301
TasI AATT 3 cut(s) 133, 168, 303
TatI WGTACW 1 cut(s) 291
TfiI GAWTC 1 cut(s) 200
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
TseI GCWGC 2 cut(s) 62, 155
XapI RAATTY 2 cut(s) 168, 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.