Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0021396

Physical Location & Seq

Genomic Coordinates Reverse (-)

67633190 .. 67641270

Gene Structure 8081 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG438700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGTGGACGAGAACCGAGGACGTGAGTTTGAAGGTACTATTGTTGCTCTATCCCGTCTCCTGATCACCAGAACAAACAAAGTCCAAGCTCTTCGTGAGGCTTTGTATCGAAAGAGCCTACCAAATAATGTGACAAGCTTACTTGCTGCTTTGTTAGTCATTCGTATCGCCGACAGTGCTCGCGGACAAGAGAAGGGTTACCCTATGAAGCTTTTGTACACCTCTAACATGCCCATCATTCTCCATCCTGCTCTAAAGACTCCAACATTTGTTTATCTTGGTTTCTTTACGAGAGGTGCGCGCAGCGAGTTTTTCGTGGTGGACTTCTTGGGCAAGTGGAGAAGGTGTCTGAGTATGGCCGGTACATTAAATTCCAGTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006605 GO:0006612 GO:0006620 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0012505 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0022804 GO:0022857 GO:0022884 GO:0031204 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0070972 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:1904680

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110

Pfam Domains

Protein Families

Plug_translocon SecY

Protein Analysis

127

Amino Acids

14.4

Weight (kDa)

10.33

Isoelectric Point (pI)

23.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021396)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0444401
rosa_laevigata	RLG00000005834
rosa_roxburghii	Rroxscaffold_5G00384930
rosa_samantha	Rh4CG438700 Rh4DG419700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	183, 301
AciI	CCGC	1 cut(s)	183
AcoI	YGGCCR	1 cut(s)	357
AcsI	RAATTY	1 cut(s)	370
AfaI	GTAC	3 cut(s)	37, 218, 364
AgsI	TTSAA	1 cut(s)	32
AjiI	CACGTC	1 cut(s)	23
AluBI	AGCT	3 cut(s)	89, 138, 211
AluI	AGCT	3 cut(s)	89, 138, 211
Alw21I	GWGCWC	1 cut(s)	181
Alw26I	GTCTC	1 cut(s)	62
AoxI	GGCC	1 cut(s)	357
ApeKI	GCWGC	2 cut(s)	146, 303
ApoI	RAATTY	1 cut(s)	370
AspLEI	GCGC	2 cut(s)	301, 303
AsuHPI	GGTGA	1 cut(s)	58
BaeI	ACNNNNGTAYC	2 cut(s)	27, 60
BarI	GAAGNNNNNNTAC	2 cut(s)	200, 232
Bbv12I	GWGCWC	1 cut(s)	181
BbvI	GCAGC	2 cut(s)	133, 315
BccI	CCATC	2 cut(s)	242, 252
BclI	TGATCA	1 cut(s)	63
BcoDI	GTCTC	1 cut(s)	62
BisI	GCNGC	2 cut(s)	147, 304
BlsI	GCNGC	2 cut(s)	148, 305
BmgBI	CACGTC	1 cut(s)	23
BsaJI	CCNNGG	1 cut(s)	16
BsaXI	ACNNNNNCTCC	2 cut(s)	331, 361
Bse118I	RCCGGY	1 cut(s)	359
Bse1I	ACTGG	1 cut(s)	375
BseDI	CCNNGG	1 cut(s)	16
BseGI	GGATG	1 cut(s)	244
BseMII	CTCAG	1 cut(s)	341
BseNI	ACTGG	1 cut(s)	375
BsePI	GCGCGC	1 cut(s)	299
BseXI	GCAGC	2 cut(s)	133, 315
Bsh1236I	CGCG	2 cut(s)	183, 301
BshFI	GGCC	1 cut(s)	359
BsiHKAI	GWGCWC	1 cut(s)	181
BsiSI	CCGG	1 cut(s)	360
BsmAI	GTCTC	1 cut(s)	62
BsmBI	CGTCTC	1 cut(s)	62
BsnI	GGCC	1 cut(s)	359
Bsp1286I	GDGCHC	1 cut(s)	181
Bsp1407I	TGTACA	1 cut(s)	216
Bsp143I	GATC	1 cut(s)	63
BspACI	CCGC	1 cut(s)	183
BspANI	GGCC	1 cut(s)	359
BspCNI	CTCAG	1 cut(s)	342
BspFNI	CGCG	2 cut(s)	183, 301
BspQI	GCTCTTC	1 cut(s)	96
BsrFI	RCCGGY	1 cut(s)	359
BsrGI	TGTACA	1 cut(s)	216
BsrI	ACTGG	1 cut(s)	375
BssAI	RCCGGY	1 cut(s)	359
BssECI	CCNNGG	1 cut(s)	16
BssHII	GCGCGC	1 cut(s)	299
BssMI	GATC	1 cut(s)	63
Bst4CI	ACNGT	1 cut(s)	176
Bst6I	CTCTTC	1 cut(s)	96
BstAUI	TGTACA	1 cut(s)	216
BstC8I	GCNNGC	2 cut(s)	181, 301
BstDEI	CTNAG	1 cut(s)	350
BstEII	GGTNACC	1 cut(s)	197
BstF5I	GGATG	1 cut(s)	244
BstFNI	CGCG	2 cut(s)	183, 301
BstHHI	GCGC	2 cut(s)	301, 303
BstKTI	GATC	1 cut(s)	66
BstMAI	GTCTC	1 cut(s)	62
BstMBI	GATC	1 cut(s)	63
BstMWI	GCNNNNNNNGC	1 cut(s)	176
BstNSI	RCATGY	1 cut(s)	232
BstPI	GGTNACC	1 cut(s)	197
BstUI	CGCG	2 cut(s)	183, 301
BstV1I	GCAGC	2 cut(s)	133, 315
BsuRI	GGCC	1 cut(s)	359
BtrI	CACGTC	1 cut(s)	23
BtsCI	GGATG	1 cut(s)	244
BtsIMutI	CAGTG	1 cut(s)	181
Cac8I	GCNNGC	2 cut(s)	181, 301
CfoI	GCGC	2 cut(s)	301, 303
Cfr10I	RCCGGY	1 cut(s)	359
Csp6I	GTAC	3 cut(s)	36, 217, 363
CviAII	CATG	1 cut(s)	229
CviJI	RGCY	6 cut(s)	89, 101, 117, 138, 211, 359
CviKI_1	RGCY	6 cut(s)	89, 101, 117, 138, 211, 359
CviQI	GTAC	3 cut(s)	36, 217, 363
DdeI	CTNAG	1 cut(s)	350
DpnI	GATC	1 cut(s)	65
DpnII	GATC	1 cut(s)	63
EaeI	YGGCCR	1 cut(s)	357
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Eco91I	GGTNACC	1 cut(s)	197
EcoO65I	GGTNACC	1 cut(s)	197
Esp3I	CGTCTC	1 cut(s)	62
FaeI	CATG	1 cut(s)	232
FaiI	YATR	3 cut(s)	206, 230, 356
FatI	CATG	1 cut(s)	228
FbaI	TGATCA	1 cut(s)	63
Fnu4HI	GCNGC	2 cut(s)	147, 304
FokI	GGATG	1 cut(s)	231
Fsp4HI	GCNGC	2 cut(s)	147, 304
GlaI	GCGC	2 cut(s)	300, 302
GluI	GCNGC	2 cut(s)	147, 304
HaeIII	GGCC	1 cut(s)	359
HapII	CCGG	1 cut(s)	360
HhaI	GCGC	2 cut(s)	301, 303
Hin1II	CATG	1 cut(s)	232
Hin6I	GCGC	2 cut(s)	299, 301
HinP1I	GCGC	2 cut(s)	299, 301
HindIII	AAGCTT	2 cut(s)	136, 209
HinfI	GANTC	1 cut(s)	259
HpaII	CCGG	1 cut(s)	360
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	3 cut(s)	7, 219, 322
Hpy188I	TCNGA	1 cut(s)	351
Hpy188III	TCNNGA	2 cut(s)	61, 95
Hpy8I	GTNNAC	3 cut(s)	7, 219, 322
HpyAV	CCTTC	3 cut(s)	26, 187, 336
HpyCH4III	ACNGT	1 cut(s)	176
HpyCH4IV	ACGT	1 cut(s)	22
HpyF10VI	GCNNNNNNNGC	1 cut(s)	176
HpyF3I	CTNAG	1 cut(s)	350
HpySE526I	ACGT	1 cut(s)	22
Hsp92II	CATG	1 cut(s)	232
HspAI	GCGC	2 cut(s)	299, 301
Ksp22I	TGATCA	1 cut(s)	63
Kzo9I	GATC	1 cut(s)	63
LguI	GCTCTTC	1 cut(s)	96
LpnPI	CCDG	4 cut(s)	74, 82, 261, 373
Lsp1109I	GCAGC	2 cut(s)	133, 315
MaeII	ACGT	1 cut(s)	22
MaeIII	GTNAC	2 cut(s)	130, 197
MalI	GATC	1 cut(s)	65
MboI	GATC	1 cut(s)	63
MboII	GAAGA	1 cut(s)	83
MhlI	GDGCHC	1 cut(s)	181
MluCI	AATT	1 cut(s)	370
MlyI	GAGTC	1 cut(s)	253
MmeI	TCCRAC	1 cut(s)	287
MnlI	CCTC	4 cut(s)	11, 91, 232, 287
MseI	TTAA	1 cut(s)	368
MspI	CCGG	1 cut(s)	360
MvnI	CGCG	2 cut(s)	183, 301
MwoI	GCNNNNNNNGC	1 cut(s)	176
NdeII	GATC	1 cut(s)	63
NlaIII	CATG	1 cut(s)	232
NmuCI	GTSAC	1 cut(s)	130
NspI	RCATGY	1 cut(s)	232
PauI	GCGCGC	1 cut(s)	299
PciSI	GCTCTTC	1 cut(s)	96
PkrI	GCNGC	2 cut(s)	148, 305
PleI	GAGTC	1 cut(s)	253
PpsI	GAGTC	1 cut(s)	253
PspEI	GGTNACC	1 cut(s)	197
PteI	GCGCGC	1 cut(s)	299
RsaI	GTAC	3 cut(s)	37, 218, 364
RsaNI	GTAC	3 cut(s)	36, 217, 363
SapI	GCTCTTC	1 cut(s)	96
SaqAI	TTAA	1 cut(s)	368
SatI	GCNGC	2 cut(s)	147, 304
Sau3AI	GATC	1 cut(s)	63
SchI	GAGTC	1 cut(s)	253
SduI	GDGCHC	1 cut(s)	181
SetI	ASST	8 cut(s)	25, 37, 91, 140, 213, 224, 298, 347
Sse9I	AATT	1 cut(s)	370
SsiI	CCGC	1 cut(s)	183
TaaI	ACNGT	1 cut(s)	176
TaiI	ACGT	1 cut(s)	25
TaqI	TCGA	1 cut(s)	109
TasI	AATT	1 cut(s)	370
TatI	WGTACW	1 cut(s)	216
Tru1I	TTAA	1 cut(s)	368
Tru9I	TTAA	1 cut(s)	368
TscAI	CASTG	1 cut(s)	181
TseFI	GTSAC	1 cut(s)	130
TseI	GCWGC	2 cut(s)	146, 303
Tsp45I	GTSAC	1 cut(s)	130
TspDTI	ATGAA	1 cut(s)	221
TspRI	CASTG	1 cut(s)	181
XapI	RAATTY	1 cut(s)	370
XceI	RCATGY	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.