Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0021396

Physical Location & Seq

Genomic Coordinates Reverse (-)

64135478 .. 64137248

Gene Structure 1771 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00384930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGCCAACACAGCAAATGCTGGTGTCCCTGTCCCTTACTTGCTGCCTAACCCTCCGAAGATAAAGGCCATAAGGGTCAAGCCACGGCTAGGACGTGTGTATGGCAGTGTCTCTCTGCTCGGAGAGTCGGAGTTGGTAAAGGCCCTGCCAACATTTGTGACAATATTTTCTGGAAGGCTTTTATTTTCAATACTACAAATGGTGGACGAGGACCGAGGACGTGAGTTTGAAGTCATTCGTATCGCGGTACGTATTGCCATTTTCTTGCATGATCTTCATGTCGGAATACCTGTGAAATCAGAGGACAGTGCTCGTGGACAAGAGAAGAGTTACCCTATGAAGCTTTTGTACACCTCTATCAGAGCTAGACCTGACATGAGTCTCATAAGTCGGCCGTTTCGTAGGTGCGCGCAGCGGGTTTTTCGCGGTGGACTTCTGGGGCAAGTGGAAGCCGATCCGGCCCATACCGTGTTTTATGTGGTGTTTATGCTTACACCTTCTGCAATGTTGTCAAGAACTTGGGTTTCTGGTTCTTCCACCCGAGATGTAGCAAAGAAGCTTAGGGAACAAAACATTGCAATGCCTGGACATAGAGTTTCAAACTTGAACAAGAAACTTAATTGTTGCGTACCTACTACGGCTGCGTTTGGAGGAATTTGCATTGGTGCTTGGACTCTTCTTGAGGATTCCATAGGAGCATCGGCACAGGTTCTGGGATTTTGCTTGCTTTTACCATCATATATATCAACAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006605 GO:0006612 GO:0006620 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0012505 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0022804 GO:0022857 GO:0022884 GO:0031204 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0070972 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:1904680

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110

Pfam Domains

Protein Families

Plug_translocon SecY

Protein Analysis

251

Amino Acids

27.59

Weight (kDa)

9.89

Isoelectric Point (pI)

34.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SecY	PF00344	81 - 240	5.6e-15	SecY

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021396)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0444401
rosa_laevigata	RLG00000005834
rosa_roxburghii	Rroxscaffold_5G00384930
rosa_samantha	Rh4CG438700 Rh4DG419700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	245, 410, 426
AciI	CCGC	3 cut(s)	245, 415, 426
AclWI	GGATC	1 cut(s)	449
AcoI	YGGCCR	2 cut(s)	3, 392
AcsI	RAATTY	1 cut(s)	654
AfaI	GTAC	3 cut(s)	249, 350, 630
AfiI	CCNNNNNNNGG	1 cut(s)	89
AflIII	ACRYGT	1 cut(s)	94
AgsI	TTSAA	4 cut(s)	189, 230, 600, 607
AjiI	CACGTC	2 cut(s)	95, 221
AjnI	CCWGG	1 cut(s)	583
AluBI	AGCT	3 cut(s)	343, 365, 559
AluI	AGCT	3 cut(s)	343, 365, 559
Alw21I	GWGCWC	1 cut(s)	313
Alw26I	GTCTC	2 cut(s)	115, 386
AlwI	GGATC	1 cut(s)	449
AlwNI	CAGNNNCTG	1 cut(s)	712
Ama87I	CYCGRG	1 cut(s)	540
AoxI	GGCC	5 cut(s)	3, 66, 141, 392, 459
ApeKI	GCWGC	3 cut(s)	43, 412, 641
ApoI	RAATTY	1 cut(s)	654
Asp700I	GAANNNNTTC	1 cut(s)	234
AspLEI	GCGC	2 cut(s)	410, 412
AspS9I	GGNCC	3 cut(s)	142, 211, 460
AvaI	CYCGRG	1 cut(s)	540
AvaII	GGWCC	1 cut(s)	211
BalI	TGGCCA	1 cut(s)	5
BarI	GAAGNNNNNNTAC	2 cut(s)	332, 364
BauI	CACGAG	1 cut(s)	312
Bbv12I	GWGCWC	1 cut(s)	313
BbvI	GCAGC	3 cut(s)	30, 424, 628
BccI	CCATC	1 cut(s)	742
BceAI	ACGGC	3 cut(s)	101, 379, 654
BciT130I	CCWGG	1 cut(s)	585
BcoDI	GTCTC	2 cut(s)	115, 386
BfaI	CTAG	2 cut(s)	89, 366
BglI	GCCNNNNNGGC	1 cut(s)	458
BisI	GCNGC	3 cut(s)	44, 413, 642
BlsI	GCNGC	3 cut(s)	45, 414, 643
Bme1390I	CCNGG	1 cut(s)	585
Bme18I	GGWCC	1 cut(s)	211
BmeT110I	CYCGRG	1 cut(s)	540
BmgBI	CACGTC	2 cut(s)	95, 221
BmgT120I	GGNCC	3 cut(s)	142, 211, 460
BmrFI	CCNGG	1 cut(s)	585
BmsI	GCATC	1 cut(s)	707
BoxI	GACNNNNGTC	1 cut(s)	378
Bpu10I	CCTNAGC	1 cut(s)	560
BpuEI	CTTGAG	1 cut(s)	701
BsaAI	YACGTR	1 cut(s)	251
BsaJI	CCNNGG	2 cut(s)	83, 214
Bsc4I	CCNNNNNNNGG	1 cut(s)	89
Bse3DI	GCAATG	3 cut(s)	510, 573, 585
BseBI	CCWGG	1 cut(s)	585
BseDI	CCNNGG	2 cut(s)	83, 214
BseLI	CCNNNNNNNGG	1 cut(s)	89
BseMI	GCAATG	3 cut(s)	510, 573, 585
BsePI	GCGCGC	1 cut(s)	408
BseX3I	CGGCCG	1 cut(s)	392
BseXI	GCAGC	3 cut(s)	30, 424, 628
Bsh1236I	CGCG	3 cut(s)	245, 410, 426
Bsh1285I	CGRYCG	1 cut(s)	395
BshFI	GGCC	5 cut(s)	5, 68, 143, 394, 461
BsiEI	CGRYCG	1 cut(s)	395
BsiHKAI	GWGCWC	1 cut(s)	313
BsiHKCI	CYCGRG	1 cut(s)	540
BsiSI	CCGG	1 cut(s)	458
BslFI	GGGAC	2 cut(s)	11, 17
BslI	CCNNNNNNNGG	1 cut(s)	89
BsmAI	GTCTC	2 cut(s)	115, 386
BsmFI	GGGAC	2 cut(s)	11, 17
BsnI	GGCC	5 cut(s)	5, 68, 143, 394, 461
BsoBI	CYCGRG	1 cut(s)	540
Bsp1286I	GDGCHC	1 cut(s)	313
Bsp1407I	TGTACA	1 cut(s)	348
Bsp143I	GATC	2 cut(s)	271, 454
BspACI	CCGC	3 cut(s)	245, 415, 426
BspANI	GGCC	5 cut(s)	5, 68, 143, 394, 461
BspFNI	CGCG	3 cut(s)	245, 410, 426
BspPI	GGATC	1 cut(s)	449
BsrDI	GCAATG	3 cut(s)	510, 573, 585
BsrGI	TGTACA	1 cut(s)	348
BssECI	CCNNGG	2 cut(s)	83, 214
BssHII	GCGCGC	1 cut(s)	408
BssMI	GATC	2 cut(s)	271, 454
BssSI	CACGAG	1 cut(s)	312
Bst2BI	CACGAG	1 cut(s)	312
Bst2UI	CCWGG	1 cut(s)	585
Bst4CI	ACNGT	3 cut(s)	308, 469, 751
Bst6I	CTCTTC	2 cut(s)	320, 681
BstAUI	TGTACA	1 cut(s)	348
BstBAI	YACGTR	1 cut(s)	251
BstC8I	GCNNGC	2 cut(s)	410, 725
BstDEI	CTNAG	1 cut(s)	560
BstDSI	CCRYGG	1 cut(s)	83
BstFNI	CGCG	3 cut(s)	245, 410, 426
BstHHI	GCGC	2 cut(s)	410, 412
BstKTI	GATC	2 cut(s)	274, 457
BstMAI	GTCTC	2 cut(s)	115, 386
BstMBI	GATC	2 cut(s)	271, 454
BstMCI	CGRYCG	1 cut(s)	395
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 458
BstNI	CCWGG	1 cut(s)	585
BstPAI	GACNNNNGTC	1 cut(s)	378
BstSCI	CCNGG	1 cut(s)	583
BstSNI	TACGTA	1 cut(s)	251
BstUI	CGCG	3 cut(s)	245, 410, 426
BstV1I	GCAGC	3 cut(s)	30, 424, 628
BstZI	CGGCCG	1 cut(s)	392
BsuRI	GGCC	5 cut(s)	5, 68, 143, 394, 461
BtgI	CCRYGG	1 cut(s)	83
BtrI	CACGTC	2 cut(s)	95, 221
BtsI	GCAGTG	1 cut(s)	112
BtsIMutI	CAGTG	2 cut(s)	112, 313
Cac8I	GCNNGC	2 cut(s)	410, 725
CaiI	CAGNNNCTG	1 cut(s)	712
CfoI	GCGC	2 cut(s)	410, 412
Cfr13I	GGNCC	3 cut(s)	142, 211, 460
Csp6I	GTAC	3 cut(s)	248, 349, 629
CviAII	CATG	3 cut(s)	269, 278, 376
CviQI	GTAC	3 cut(s)	248, 349, 629
DdeI	CTNAG	1 cut(s)	560
DpnI	GATC	2 cut(s)	273, 456
DpnII	GATC	2 cut(s)	271, 454
EaeI	YGGCCR	2 cut(s)	3, 392
EagI	CGGCCG	1 cut(s)	392
Eam1104I	CTCTTC	2 cut(s)	320, 681
EarI	CTCTTC	2 cut(s)	320, 681
EclXI	CGGCCG	1 cut(s)	392
Eco105I	TACGTA	1 cut(s)	251
Eco47I	GGWCC	1 cut(s)	211
Eco52I	CGGCCG	1 cut(s)	392
Eco88I	CYCGRG	1 cut(s)	540
EcoO109I	RGGNCCY	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	583
FaeI	CATG	3 cut(s)	272, 281, 379
FaqI	GGGAC	2 cut(s)	11, 17
FatI	CATG	3 cut(s)	268, 277, 375
FauI	CCCGC	1 cut(s)	408
Fnu4HI	GCNGC	3 cut(s)	44, 413, 642
Fsp4HI	GCNGC	3 cut(s)	44, 413, 642
FspBI	CTAG	2 cut(s)	89, 366
GlaI	GCGC	2 cut(s)	409, 411
GluI	GCNGC	3 cut(s)	44, 413, 642
HaeIII	GGCC	5 cut(s)	5, 68, 143, 394, 461
HapII	CCGG	1 cut(s)	458
HhaI	GCGC	2 cut(s)	410, 412
Hin1II	CATG	3 cut(s)	272, 281, 379
Hin6I	GCGC	2 cut(s)	408, 410
HinP1I	GCGC	2 cut(s)	408, 410
HindIII	AAGCTT	2 cut(s)	341, 557
HinfI	GANTC	4 cut(s)	125, 379, 673, 686
HpaII	CCGG	1 cut(s)	458
Hpy166II	GTNNAC	4 cut(s)	205, 317, 351, 431
Hpy188I	TCNGA	6 cut(s)	57, 122, 130, 284, 301, 362
Hpy188III	TCNNGA	3 cut(s)	171, 513, 680
Hpy8I	GTNNAC	4 cut(s)	205, 317, 351, 431
HpyAV	CCTTC	2 cut(s)	168, 507
HpyCH4III	ACNGT	3 cut(s)	308, 469, 751
HpyCH4IV	ACGT	3 cut(s)	94, 220, 250
HpyCH4V	TGCA	4 cut(s)	268, 503, 578, 660
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 458
HpyF3I	CTNAG	1 cut(s)	560
HpySE526I	ACGT	3 cut(s)	94, 220, 250
Hsp92II	CATG	3 cut(s)	272, 281, 379
HspAI	GCGC	2 cut(s)	408, 410
Kzo9I	GATC	2 cut(s)	271, 454
LmnI	GCTCC	1 cut(s)	695
Lsp1109I	GCAGC	3 cut(s)	30, 424, 628
LweI	GCATC	1 cut(s)	707
MaeI	CTAG	2 cut(s)	89, 366
MaeII	ACGT	3 cut(s)	94, 220, 250
MaeIII	GTNAC	2 cut(s)	157, 329
MalI	GATC	2 cut(s)	273, 456
MboI	GATC	2 cut(s)	271, 454
MboII	GAAGA	5 cut(s)	70, 266, 337, 525, 668
MhlI	GDGCHC	1 cut(s)	313
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	619, 654
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	134, 388, 667
MmeI	TCCRAC	2 cut(s)	108, 262
MnlI	CCTC	7 cut(s)	63, 202, 209, 295, 364, 644, 676
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	234
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	618
MslI	CAYNNNNRTG	1 cut(s)	578
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	415
MspI	CCGG	1 cut(s)	458
MspR9I	CCNGG	1 cut(s)	585
MvaI	CCWGG	1 cut(s)	585
MvnI	CGCG	3 cut(s)	245, 410, 426
MwoI	GCNNNNNNNGC	2 cut(s)	11, 458
NdeII	GATC	2 cut(s)	271, 454
NlaIII	CATG	3 cut(s)	272, 281, 379
NmuCI	GTSAC	1 cut(s)	157
PauI	GCGCGC	1 cut(s)	408
PcsI	WCGNNNNNNNCGW	2 cut(s)	91, 397
PdmI	GAANNNNTTC	1 cut(s)	234
PfeI	GAWTC	1 cut(s)	686
PkrI	GCNGC	3 cut(s)	45, 414, 643
PleI	GAGTC	3 cut(s)	133, 387, 667
PpsI	GAGTC	3 cut(s)	133, 387, 667
Ppu21I	YACGTR	1 cut(s)	251
PshAI	GACNNNNGTC	1 cut(s)	378
Psp6I	CCWGG	1 cut(s)	583
PspGI	CCWGG	1 cut(s)	583
PspPI	GGNCC	3 cut(s)	142, 211, 460
PstNI	CAGNNNCTG	1 cut(s)	712
PteI	GCGCGC	1 cut(s)	408
RsaI	GTAC	3 cut(s)	249, 350, 630
RsaNI	GTAC	3 cut(s)	248, 349, 629
RseI	CAYNNNNRTG	1 cut(s)	578
SaqAI	TTAA	1 cut(s)	618
SatI	GCNGC	3 cut(s)	44, 413, 642
Sau3AI	GATC	2 cut(s)	271, 454
Sau96I	GGNCC	3 cut(s)	142, 211, 460
SchI	GAGTC	3 cut(s)	134, 388, 667
ScrFI	CCNGG	1 cut(s)	585
SduI	GDGCHC	1 cut(s)	313
SfaNI	GCATC	1 cut(s)	707
SinI	GGWCC	1 cut(s)	211
SmiMI	CAYNNNNRTG	1 cut(s)	578
SmlI	CTYRAG	1 cut(s)	680
SmoI	CTYRAG	1 cut(s)	680
SnaBI	TACGTA	1 cut(s)	251
Sse9I	AATT	2 cut(s)	619, 654
SsiI	CCGC	3 cut(s)	245, 415, 426
SspI	AATATT	1 cut(s)	165
SspMI	CTAG	2 cut(s)	89, 366
StyD4I	CCNGG	1 cut(s)	583
TaaI	ACNGT	3 cut(s)	308, 469, 751
TaiI	ACGT	3 cut(s)	97, 223, 253
TaqII	GACCGA	1 cut(s)	228
TasI	AATT	2 cut(s)	619, 654
TatI	WGTACW	1 cut(s)	348
TfiI	GAWTC	1 cut(s)	686
Tru1I	TTAA	1 cut(s)	618
Tru9I	TTAA	1 cut(s)	618
TscAI	CASTG	2 cut(s)	112, 313
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	3 cut(s)	43, 412, 641
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	2 cut(s)	266, 353
TspRI	CASTG	2 cut(s)	112, 313
VpaK11BI	GGWCC	1 cut(s)	211
XapI	RAATTY	1 cut(s)	654
XmnI	GAANNNNTTC	1 cut(s)	234
XspI	CTAG	2 cut(s)	89, 366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.