Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0021396

Physical Location & Seq

Genomic Coordinates Forward (+)

2223623 .. 2224459

Gene Structure 837 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005834

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGTGGACGAGGACGGAGGACGTGAGTTTGAAGGTACTGTTGTTGCTCTATCCCATCTCCTGATCACCAGAACAAACAAAGTCCAAGCTCTTCGTGAGGCTTTGTATCGAAAGAGCCTACCAAATAATGTGACAGGCTTACTTGCTGCTTTGTTAGTCATTCGTATCGCGGTACGTATTGCCATTTTCTTGCATGATCTTCATGTTGGAATACCTGTGAAATCAAACGACAGTGCTCGCGGGCAAGAGAAGAGCTACCCTATGAAGCTTTTGTACACGTCTAACATGCCCATCATTCTCCATCCTGCTCTAAAGACTCCAACATTTGTTTATCTTGGTTTCTTTACGAGAGGTGCAGCGGCTTGTGCAATGTCGTCAAGAACTTGGGTTTCTGGTTCTTCCACACGAGATGTAGCAAAGAAGCTTAGGGAACAAAACATTGCAATGCCTGGACACAGAGTTTCAAACTTGAACAAGAAACTTAATTGTTGCGTACCTACTACGGCTGCGTTTGGAGGAATTTGCATTGGTGCTCGGACTCTTCTTGCGGATTCCATGGGGGCATCGGCACAGGTTCTGGGATTTTGCTTGCTTTTACCATCACATATCAACAGTTTGAGACATATCATAAAGAGTGGACTGAACTTTTTTCGAATTTGTAACTTCTGTAACTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006605 GO:0006612 GO:0006620 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0012505 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0022804 GO:0022857 GO:0022884 GO:0031204 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0070972 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:1904680

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110

Pfam Domains

Protein Families

Plug_translocon SecY

Protein Analysis

226

Amino Acids

24.59

Weight (kDa)

9.9

Isoelectric Point (pI)

30.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SecY	PF00344	35 - 195	7.1e-18	SecY

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021396)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0444401
rosa_laevigata	RLG00000005834
rosa_roxburghii	Rroxscaffold_5G00384930
rosa_samantha	Rh4CG438700 Rh4DG419700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	170, 240
AciI	CCGC	4 cut(s)	170, 240, 359, 548
AcsI	RAATTY	2 cut(s)	519, 654
AfaI	GTAC	4 cut(s)	37, 174, 275, 495
AflIII	ACRYGT	1 cut(s)	276
AgsI	TTSAA	3 cut(s)	32, 465, 472
AjiI	CACGTC	2 cut(s)	23, 279
AjnI	CCWGG	1 cut(s)	448
AluBI	AGCT	4 cut(s)	89, 255, 268, 424
AluI	AGCT	4 cut(s)	89, 255, 268, 424
Alw21I	GWGCWC	2 cut(s)	238, 535
Alw26I	GTCTC	1 cut(s)	613
AlwNI	CAGNNNCTG	1 cut(s)	577
ApeKI	GCWGC	3 cut(s)	146, 356, 506
ApoI	RAATTY	2 cut(s)	519, 654
AsuHPI	GGTGA	1 cut(s)	58
AsuII	TTCGAA	1 cut(s)	652
BaeI	ACNNNNGTAYC	2 cut(s)	27, 60
BarI	GAAGNNNNNNTAC	2 cut(s)	257, 289
BauI	CACGAG	1 cut(s)	405
Bbv12I	GWGCWC	2 cut(s)	238, 535
BbvI	GCAGC	3 cut(s)	133, 368, 493
BccI	CCATC	4 cut(s)	63, 299, 309, 607
BceAI	ACGGC	1 cut(s)	519
BciT130I	CCWGG	1 cut(s)	450
BclI	TGATCA	1 cut(s)	63
BcoDI	GTCTC	1 cut(s)	613
BfaI	CTAG	1 cut(s)	676
BisI	GCNGC	4 cut(s)	147, 357, 360, 507
BlsI	GCNGC	4 cut(s)	148, 358, 361, 508
Bme1390I	CCNGG	1 cut(s)	450
BmgBI	CACGTC	2 cut(s)	23, 279
BmrFI	CCNGG	1 cut(s)	450
BmsI	GCATC	1 cut(s)	572
Bpu10I	CCTNAGC	1 cut(s)	425
Bpu14I	TTCGAA	1 cut(s)	652
BsaAI	YACGTR	1 cut(s)	176
BsaJI	CCNNGG	1 cut(s)	555
Bse3DI	GCAATG	3 cut(s)	375, 438, 450
BseBI	CCWGG	1 cut(s)	450
BseDI	CCNNGG	1 cut(s)	555
BseGI	GGATG	1 cut(s)	301
BseMI	GCAATG	3 cut(s)	375, 438, 450
BseXI	GCAGC	3 cut(s)	133, 368, 493
BsgI	GTGCAG	1 cut(s)	375
Bsh1236I	CGCG	2 cut(s)	170, 240
BsiHKAI	GWGCWC	2 cut(s)	238, 535
BsmAI	GTCTC	1 cut(s)	613
Bsp119I	TTCGAA	1 cut(s)	652
Bsp1286I	GDGCHC	2 cut(s)	238, 535
Bsp1407I	TGTACA	1 cut(s)	273
Bsp143I	GATC	2 cut(s)	63, 196
Bsp19I	CCATGG	1 cut(s)	555
BspACI	CCGC	4 cut(s)	170, 240, 359, 548
BspFNI	CGCG	2 cut(s)	170, 240
BspQI	GCTCTTC	2 cut(s)	96, 245
BspT104I	TTCGAA	1 cut(s)	652
BsrDI	GCAATG	3 cut(s)	375, 438, 450
BsrGI	TGTACA	1 cut(s)	273
BssECI	CCNNGG	1 cut(s)	555
BssMI	GATC	2 cut(s)	63, 196
BssSI	CACGAG	1 cut(s)	405
BssT1I	CCWWGG	1 cut(s)	555
Bst2BI	CACGAG	1 cut(s)	405
Bst2UI	CCWGG	1 cut(s)	450
Bst4CI	ACNGT	3 cut(s)	40, 233, 614
Bst6I	CTCTTC	3 cut(s)	96, 245, 546
BstAUI	TGTACA	1 cut(s)	273
BstBAI	YACGTR	1 cut(s)	176
BstBI	TTCGAA	1 cut(s)	652
BstC8I	GCNNGC	3 cut(s)	238, 242, 590
BstDEI	CTNAG	1 cut(s)	425
BstDSI	CCRYGG	1 cut(s)	555
BstF5I	GGATG	1 cut(s)	301
BstFNI	CGCG	2 cut(s)	170, 240
BstKTI	GATC	2 cut(s)	66, 199
BstMAI	GTCTC	1 cut(s)	613
BstMBI	GATC	2 cut(s)	63, 196
BstMWI	GCNNNNNNNGC	1 cut(s)	365
BstNI	CCWGG	1 cut(s)	450
BstNSI	RCATGY	1 cut(s)	289
BstSCI	CCNGG	1 cut(s)	448
BstSNI	TACGTA	1 cut(s)	176
BstUI	CGCG	2 cut(s)	170, 240
BstV1I	GCAGC	3 cut(s)	133, 368, 493
BtgI	CCRYGG	1 cut(s)	555
BtrI	CACGTC	2 cut(s)	23, 279
BtsCI	GGATG	1 cut(s)	301
BtsIMutI	CAGTG	1 cut(s)	238
Cac8I	GCNNGC	3 cut(s)	238, 242, 590
CaiI	CAGNNNCTG	1 cut(s)	577
Csp6I	GTAC	4 cut(s)	36, 173, 274, 494
CviAII	CATG	4 cut(s)	194, 203, 286, 556
CviJI	RGCY	9 cut(s)	89, 101, 117, 138, 255, 268, 362, 424, 506
CviKI_1	RGCY	9 cut(s)	89, 101, 117, 138, 255, 268, 362, 424, 506
CviQI	GTAC	4 cut(s)	36, 173, 274, 494
DdeI	CTNAG	1 cut(s)	425
DpnI	GATC	2 cut(s)	65, 198
DpnII	GATC	2 cut(s)	63, 196
Eam1104I	CTCTTC	3 cut(s)	96, 245, 546
EarI	CTCTTC	3 cut(s)	96, 245, 546
Eco105I	TACGTA	1 cut(s)	176
Eco130I	CCWWGG	1 cut(s)	555
EcoRII	CCWGG	1 cut(s)	448
EcoT14I	CCWWGG	1 cut(s)	555
ErhI	CCWWGG	1 cut(s)	555
FaeI	CATG	4 cut(s)	197, 206, 289, 559
FaiI	YATR	8 cut(s)	195, 204, 263, 287, 557, 606, 624, 629
FatI	CATG	4 cut(s)	193, 202, 285, 555
FauI	CCCGC	1 cut(s)	233
FbaI	TGATCA	1 cut(s)	63
Fnu4HI	GCNGC	4 cut(s)	147, 357, 360, 507
FokI	GGATG	1 cut(s)	288
Fsp4HI	GCNGC	4 cut(s)	147, 357, 360, 507
FspBI	CTAG	1 cut(s)	676
GluI	GCNGC	4 cut(s)	147, 357, 360, 507
Hin1II	CATG	4 cut(s)	197, 206, 289, 559
HindIII	AAGCTT	2 cut(s)	266, 422
HinfI	GANTC	3 cut(s)	316, 538, 551
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	3 cut(s)	7, 276, 638
Hpy188I	TCNGA	1 cut(s)	537
Hpy188III	TCNNGA	3 cut(s)	61, 95, 378
Hpy8I	GTNNAC	3 cut(s)	7, 276, 638
HpyAV	CCTTC	1 cut(s)	26
HpyCH4III	ACNGT	3 cut(s)	40, 233, 614
HpyCH4IV	ACGT	3 cut(s)	22, 175, 278
HpyCH4V	TGCA	5 cut(s)	193, 356, 368, 443, 525
HpyF10VI	GCNNNNNNNGC	1 cut(s)	365
HpyF3I	CTNAG	1 cut(s)	425
HpySE526I	ACGT	3 cut(s)	22, 175, 278
Hsp92II	CATG	4 cut(s)	197, 206, 289, 559
Ksp22I	TGATCA	1 cut(s)	63
Kzo9I	GATC	2 cut(s)	63, 196
LguI	GCTCTTC	2 cut(s)	96, 245
Lsp1109I	GCAGC	3 cut(s)	133, 368, 493
LweI	GCATC	1 cut(s)	572
MaeI	CTAG	1 cut(s)	676
MaeII	ACGT	3 cut(s)	22, 175, 278
MaeIII	GTNAC	3 cut(s)	130, 659, 668
MalI	GATC	2 cut(s)	65, 198
MboI	GATC	2 cut(s)	63, 196
MboII	GAAGA	5 cut(s)	83, 191, 262, 390, 533
MhlI	GDGCHC	2 cut(s)	238, 535
MluCI	AATT	3 cut(s)	484, 519, 654
MlyI	GAGTC	2 cut(s)	310, 532
MmeI	TCCRAC	2 cut(s)	187, 344
MnlI	CCTC	5 cut(s)	4, 11, 91, 344, 509
MseI	TTAA	1 cut(s)	483
MslI	CAYNNNNRTG	1 cut(s)	443
MspA1I	CMGCKG	1 cut(s)	359
MspR9I	CCNGG	1 cut(s)	450
MvaI	CCWGG	1 cut(s)	450
MvnI	CGCG	2 cut(s)	170, 240
MwoI	GCNNNNNNNGC	1 cut(s)	365
NcoI	CCATGG	1 cut(s)	555
NdeII	GATC	2 cut(s)	63, 196
NlaIII	CATG	4 cut(s)	197, 206, 289, 559
NmuCI	GTSAC	1 cut(s)	130
NspI	RCATGY	1 cut(s)	289
NspV	TTCGAA	1 cut(s)	652
PciSI	GCTCTTC	2 cut(s)	96, 245
PfeI	GAWTC	1 cut(s)	551
PkrI	GCNGC	4 cut(s)	148, 358, 361, 508
PleI	GAGTC	2 cut(s)	310, 532
PpsI	GAGTC	2 cut(s)	310, 532
Ppu21I	YACGTR	1 cut(s)	176
Psp6I	CCWGG	1 cut(s)	448
PspGI	CCWGG	1 cut(s)	448
PstNI	CAGNNNCTG	1 cut(s)	577
RsaI	GTAC	4 cut(s)	37, 174, 275, 495
RsaNI	GTAC	4 cut(s)	36, 173, 274, 494
RseI	CAYNNNNRTG	1 cut(s)	443
SapI	GCTCTTC	2 cut(s)	96, 245
SaqAI	TTAA	1 cut(s)	483
SatI	GCNGC	4 cut(s)	147, 357, 360, 507
Sau3AI	GATC	2 cut(s)	63, 196
SchI	GAGTC	2 cut(s)	310, 532
ScrFI	CCNGG	1 cut(s)	450
SduI	GDGCHC	2 cut(s)	238, 535
SfaNI	GCATC	1 cut(s)	572
SfuI	TTCGAA	1 cut(s)	652
SmiMI	CAYNNNNRTG	1 cut(s)	443
SnaBI	TACGTA	1 cut(s)	176
Sse9I	AATT	3 cut(s)	484, 519, 654
SsiI	CCGC	4 cut(s)	170, 240, 359, 548
SspMI	CTAG	1 cut(s)	676
StyD4I	CCNGG	1 cut(s)	448
StyI	CCWWGG	1 cut(s)	555
TaaI	ACNGT	3 cut(s)	40, 233, 614
TaiI	ACGT	3 cut(s)	25, 178, 281
TaqI	TCGA	2 cut(s)	109, 652
TasI	AATT	3 cut(s)	484, 519, 654
TatI	WGTACW	1 cut(s)	273
TauI	GCSGC	1 cut(s)	362
TfiI	GAWTC	1 cut(s)	551
Tru1I	TTAA	1 cut(s)	483
Tru9I	TTAA	1 cut(s)	483
TscAI	CASTG	1 cut(s)	238
TseFI	GTSAC	1 cut(s)	130
TseI	GCWGC	3 cut(s)	146, 356, 506
Tsp45I	GTSAC	1 cut(s)	130
TspDTI	ATGAA	2 cut(s)	191, 278
TspGWI	ACGGA	1 cut(s)	30
TspRI	CASTG	1 cut(s)	238
XapI	RAATTY	2 cut(s)	519, 654
XceI	RCATGY	1 cut(s)	289
XspI	CTAG	1 cut(s)	676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.