RchiOBHm_Chr5g0002771

Malonyl-CoA decarboxylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0021428
Physical Location & Seq
Forward (+)
1641621 .. 1641937
317 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28411

Sequence Viewer

Length: 222 bp
ATGCACTCTGCAATTTCAATGAGTAAAACTGAAGTCTTGGATTCTGTGCTGAGTGATTTCTCTGAGGGATATTTCAGCCTTTCGTATGAGAATCGTCGAAAATTGCTTGTGCAACTTGCCAAAGAGTATGATGTTAATAGGACACAAGTTCCCGATTTGATAAAGCAGTATTTGGGACTTGAGCCTCCTGGAACTGGAAGTGAGTTTCGTGTTGTTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006084 GO:0006085 GO:0006139 GO:0006163 GO:0006164 GO:0006195 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009154 GO:0009165 GO:0009166 GO:0009259 GO:0009260 GO:0009261 GO:0009893 GO:0009987 GO:0010565 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019216 GO:0019217 GO:0019222 GO:0019438 GO:0019439 GO:0019637 GO:0019693 GO:0031323 GO:0031325 GO:0031974 GO:0033865 GO:0033866 GO:0033869 GO:0033875 GO:0034030 GO:0034031 GO:0034032 GO:0034033 GO:0034034 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0035383 GO:0035384 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044272 GO:0044273 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045834 GO:0045923 GO:0046320 GO:0046321 GO:0046390 GO:0046434 GO:0046483 GO:0046700 GO:0048518 GO:0048522 GO:0050080 GO:0050789 GO:0050794 GO:0051186 GO:0051188 GO:0055086 GO:0062012 GO:0062013 GO:0065007 GO:0070013 GO:0071616 GO:0071704 GO:0072521 GO:0072522 GO:0072523 GO:0080090 GO:0090407 GO:1901135 GO:1901136 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:2001293 GO:2001294
KEGG Pathways
Metabolic & Signaling
ko00410 ko00640 ko01100 ko04146 ko04152 map00410 map00640 map01100 map04146 map04152
Pfam Domains
Protein Families
MCD MCD_N

Protein Analysis

73

Amino Acids

8.3

Weight (kDa)

5.21

Isoelectric Point (pI)

44.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021428)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0002771
rosa_laevigata RLG00000031058
rosa_rugosa Rorug04G0399300 Rorug04G0399400
rosa_samantha Rh5CG024800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 51
AfiI CCNNNNNNNGG 1 cut(s) 194
AgsI TTSAA 1 cut(s) 18
AjnI CCWGG 1 cut(s) 187
BciT130I CCWGG 1 cut(s) 189
Bme1390I CCNGG 1 cut(s) 189
BmrFI CCNGG 1 cut(s) 189
BpuEI CTTGAG 1 cut(s) 200
Bsc4I CCNNNNNNNGG 1 cut(s) 194
Bse1I ACTGG 1 cut(s) 199
BseBI CCWGG 1 cut(s) 189
BseLI CCNNNNNNNGG 1 cut(s) 194
BseMII CTCAG 2 cut(s) 41, 54
BseNI ACTGG 1 cut(s) 199
BslFI GGGAC 1 cut(s) 189
BslI CCNNNNNNNGG 1 cut(s) 194
BsmFI GGGAC 1 cut(s) 189
BspCNI CTCAG 2 cut(s) 42, 55
BsrI ACTGG 1 cut(s) 199
Bst2UI CCWGG 1 cut(s) 189
BstDEI CTNAG 2 cut(s) 50, 63
BstNI CCWGG 1 cut(s) 189
BstSCI CCNGG 1 cut(s) 187
CviJI RGCY 2 cut(s) 78, 184
CviKI_1 RGCY 2 cut(s) 78, 184
DdeI CTNAG 2 cut(s) 50, 63
Eco57I CTGAAG 1 cut(s) 51
EcoRII CCWGG 1 cut(s) 187
FaiI YATR 2 cut(s) 87, 129
FaqI GGGAC 1 cut(s) 189
HinfI GANTC 2 cut(s) 41, 91
Hpy188I TCNGA 1 cut(s) 64
Hpy188III TCNNGA 1 cut(s) 152
Hpy99I CGWCG 1 cut(s) 99
HpyCH4V TGCA 3 cut(s) 4, 11, 112
HpyF3I CTNAG 2 cut(s) 50, 63
LpnPI CCDG 3 cut(s) 174, 180, 201
MluCI AATT 3 cut(s) 12, 101, 217
MnlI CCTC 2 cut(s) 58, 195
MseI TTAA 2 cut(s) 135, 216
MspR9I CCNGG 1 cut(s) 189
MvaI CCWGG 1 cut(s) 189
PfeI GAWTC 2 cut(s) 41, 91
PfoI TCCNGGA 1 cut(s) 187
Psp6I CCWGG 1 cut(s) 187
PspGI CCWGG 1 cut(s) 187
SaqAI TTAA 2 cut(s) 135, 216
ScrFI CCNGG 1 cut(s) 189
SgeI CNNG 9 cut(s) 49, 119, 128, 158, 164, 191, 200, 201, 207
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
Sse9I AATT 3 cut(s) 12, 101, 217
StyD4I CCNGG 1 cut(s) 187
TaqI TCGA 1 cut(s) 97
TasI AATT 3 cut(s) 12, 101, 217
TfiI GAWTC 2 cut(s) 41, 91
Tru1I TTAA 2 cut(s) 135, 216
Tru9I TTAA 2 cut(s) 135, 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.