Rorug04G0399300

Malonyl-CoA decarboxylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0021428
Physical Location & Seq
Forward (+)
56484153 .. 56485466
1314 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0399300.1

Sequence Viewer

Length: 378 bp
ATGTCTACAGGAATGGAACATACCATTAGAAACTACAAACTGGTCTCAATACTCAAACCAAAGGAAGATACTACAACTGTTCTCATTGTTTGTTTTTGTAAAAATCAAACCATGGTGTCGAGTAATCATAGAGTGTTTATCCTTGCTATCTGTATTGGGTTGTTAGTATTTCAACCAAGTGAAGTTTCTGGCCATCGAAGTATAGGCGTTGCGCTAAGACTGAATCAAGAACATCATCGGATTCTTAAGGCTGTCGTCACTGAAGAAATGAACACAGGAAAGAAGAATTCAACAAGTACAAACAAGAATTTTGATCCAAATCAATCAAGCAAAAGAAAGGTGAGAAGAGGATCAGATCCTATCCACAACCGGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006084 GO:0006085 GO:0006139 GO:0006163 GO:0006164 GO:0006195 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009154 GO:0009165 GO:0009166 GO:0009259 GO:0009260 GO:0009261 GO:0009893 GO:0009987 GO:0010565 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019216 GO:0019217 GO:0019222 GO:0019438 GO:0019439 GO:0019637 GO:0019693 GO:0031323 GO:0031325 GO:0031974 GO:0033865 GO:0033866 GO:0033869 GO:0033875 GO:0034030 GO:0034031 GO:0034032 GO:0034033 GO:0034034 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0035383 GO:0035384 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044272 GO:0044273 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045834 GO:0045923 GO:0046320 GO:0046321 GO:0046390 GO:0046434 GO:0046483 GO:0046700 GO:0048518 GO:0048522 GO:0050080 GO:0050789 GO:0050794 GO:0051186 GO:0051188 GO:0055086 GO:0062012 GO:0062013 GO:0065007 GO:0070013 GO:0071616 GO:0071704 GO:0072521 GO:0072522 GO:0072523 GO:0080090 GO:0090407 GO:1901135 GO:1901136 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:2001293 GO:2001294
KEGG Pathways
Metabolic & Signaling
ko00410 ko00640 ko01100 ko04146 ko04152 map00410 map00640 map01100 map04146 map04152
Pfam Domains
Protein Families
MCD MCD_N

Protein Analysis

125

Amino Acids

14.09

Weight (kDa)

10.1

Isoelectric Point (pI)

40.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021428)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0002771
rosa_laevigata RLG00000031058
rosa_rugosa Rorug04G0399300 Rorug04G0399400
rosa_samantha Rh5CG024800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 5
AclWI GGATC 3 cut(s) 308, 350, 358
AcoI YGGCCR 1 cut(s) 190
AcsI RAATTY 2 cut(s) 286, 307
AcuI CTGAAG 1 cut(s) 282
AfaI GTAC 1 cut(s) 298
AfiI CCNNNNNNNGG 1 cut(s) 370
AflII CTTAAG 1 cut(s) 245
AgsI TTSAA 2 cut(s) 173, 291
AjuI GAANNNNNNNTTGG 2 cut(s) 169, 201
Alw26I GTCTC 1 cut(s) 49
AlwI GGATC 3 cut(s) 308, 350, 358
AoxI GGCC 1 cut(s) 190
ApoI RAATTY 2 cut(s) 286, 307
AspLEI GCGC 1 cut(s) 214
AsuC2I CCSGG 1 cut(s) 371
AsuHPI GGTGA 1 cut(s) 352
BalI TGGCCA 1 cut(s) 192
BccI CCATC 1 cut(s) 201
BcnI CCSGG 1 cut(s) 371
BcoDI GTCTC 1 cut(s) 49
BfmI CTRYAG 1 cut(s) 6
BfrI CTTAAG 1 cut(s) 245
Bme1390I CCNGG 1 cut(s) 371
BmrFI CCNGG 1 cut(s) 371
BpuMI CCSGG 1 cut(s) 371
BsaBI GATNNNNATC 1 cut(s) 318
BsaI GGTCTC 1 cut(s) 49
BsaJI CCNNGG 1 cut(s) 111
Bsc4I CCNNNNNNNGG 1 cut(s) 370
Bse1I ACTGG 1 cut(s) 45
Bse8I GATNNNNATC 1 cut(s) 318
BseDI CCNNGG 1 cut(s) 111
BseJI GATNNNNATC 1 cut(s) 318
BseLI CCNNNNNNNGG 1 cut(s) 370
BseNI ACTGG 1 cut(s) 45
BshFI GGCC 1 cut(s) 192
BsiSI CCGG 1 cut(s) 370
BslI CCNNNNNNNGG 1 cut(s) 370
BsmAI GTCTC 1 cut(s) 49
BsnI GGCC 1 cut(s) 192
Bso31I GGTCTC 1 cut(s) 49
Bsp143I GATC 3 cut(s) 313, 350, 355
Bsp19I CCATGG 1 cut(s) 111
BspANI GGCC 1 cut(s) 192
BspPI GGATC 3 cut(s) 308, 350, 358
BspTI CTTAAG 1 cut(s) 245
BspTNI GGTCTC 1 cut(s) 49
BsrI ACTGG 1 cut(s) 45
BssECI CCNNGG 1 cut(s) 111
BssMI GATC 3 cut(s) 313, 350, 355
BssT1I CCWWGG 1 cut(s) 111
Bst4CI ACNGT 1 cut(s) 79
Bst6I CTCTTC 1 cut(s) 340
BstAFI CTTAAG 1 cut(s) 245
BstDEI CTNAG 2 cut(s) 215, 375
BstDSI CCRYGG 1 cut(s) 111
BstHHI GCGC 1 cut(s) 214
BstKTI GATC 3 cut(s) 316, 353, 358
BstMAI GTCTC 1 cut(s) 49
BstMBI GATC 3 cut(s) 313, 350, 355
BstSCI CCNGG 1 cut(s) 369
BstSFI CTRYAG 1 cut(s) 6
BstX2I RGATCY 1 cut(s) 355
BstYI RGATCY 1 cut(s) 355
BsuRI GGCC 1 cut(s) 192
BtgI CCRYGG 1 cut(s) 111
BtsIMutI CAGTG 1 cut(s) 258
CfoI GCGC 1 cut(s) 214
Csp6I GTAC 1 cut(s) 297
CviAII CATG 1 cut(s) 112
CviJI RGCY 3 cut(s) 192, 251, 374
CviKI_1 RGCY 3 cut(s) 192, 251, 374
CviQI GTAC 1 cut(s) 297
DdeI CTNAG 2 cut(s) 215, 375
DpnI GATC 3 cut(s) 315, 352, 357
DpnII GATC 3 cut(s) 313, 350, 355
EaeI YGGCCR 1 cut(s) 190
Eam1104I CTCTTC 1 cut(s) 340
EarI CTCTTC 1 cut(s) 340
Eco130I CCWWGG 1 cut(s) 111
Eco31I GGTCTC 1 cut(s) 49
Eco57I CTGAAG 1 cut(s) 282
EcoRI GAATTC 1 cut(s) 286
EcoT14I CCWWGG 1 cut(s) 111
ErhI CCWWGG 1 cut(s) 111
FaeI CATG 1 cut(s) 115
FaiI YATR 4 cut(s) 21, 113, 129, 203
FatI CATG 1 cut(s) 111
FblI GTMKAC 1 cut(s) 5
GlaI GCGC 1 cut(s) 213
HaeIII GGCC 1 cut(s) 192
HapII CCGG 1 cut(s) 370
HhaI GCGC 1 cut(s) 214
Hin1II CATG 1 cut(s) 115
Hin6I GCGC 1 cut(s) 212
HinP1I GCGC 1 cut(s) 212
HinfI GANTC 2 cut(s) 223, 241
HpaII CCGG 1 cut(s) 370
HphI GGTGA 1 cut(s) 352
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 2 cut(s) 240, 355
Hpy188III TCNNGA 1 cut(s) 227
Hpy8I GTNNAC 1 cut(s) 6
HpyCH4III ACNGT 1 cut(s) 79
HpyF3I CTNAG 2 cut(s) 215, 375
Hsp92II CATG 1 cut(s) 115
HspAI GCGC 1 cut(s) 212
Kzo9I GATC 3 cut(s) 313, 350, 355
LpnPI CCDG 3 cut(s) 26, 174, 261
MaeIII GTNAC 1 cut(s) 256
MalI GATC 3 cut(s) 315, 352, 357
MboI GATC 3 cut(s) 313, 350, 355
MboII GAAGA 4 cut(s) 77, 275, 295, 357
MflI RGATCY 1 cut(s) 355
MlsI TGGCCA 1 cut(s) 192
MluCI AATT 2 cut(s) 286, 307
MluNI TGGCCA 1 cut(s) 192
MnlI CCTC 1 cut(s) 341
Mox20I TGGCCA 1 cut(s) 192
MscI TGGCCA 1 cut(s) 192
MseI TTAA 1 cut(s) 246
Msp20I TGGCCA 1 cut(s) 192
MspCI CTTAAG 1 cut(s) 245
MspI CCGG 1 cut(s) 370
MspR9I CCNGG 1 cut(s) 371
NciI CCSGG 1 cut(s) 371
NcoI CCATGG 1 cut(s) 111
NdeII GATC 3 cut(s) 313, 350, 355
NlaIII CATG 1 cut(s) 115
NmuCI GTSAC 1 cut(s) 256
PfeI GAWTC 2 cut(s) 223, 241
PsuI RGATCY 1 cut(s) 355
RsaI GTAC 1 cut(s) 298
RsaNI GTAC 1 cut(s) 297
SaqAI TTAA 1 cut(s) 246
Sau3AI GATC 3 cut(s) 313, 350, 355
ScrFI CCNGG 1 cut(s) 371
SetI ASST 1 cut(s) 342
SfcI CTRYAG 1 cut(s) 6
SmlI CTYRAG 1 cut(s) 245
SmoI CTYRAG 1 cut(s) 245
Sse9I AATT 2 cut(s) 286, 307
StyD4I CCNGG 1 cut(s) 369
StyI CCWWGG 1 cut(s) 111
TaaI ACNGT 1 cut(s) 79
TaqI TCGA 2 cut(s) 119, 196
TasI AATT 2 cut(s) 286, 307
TatI WGTACW 1 cut(s) 296
TfiI GAWTC 2 cut(s) 223, 241
Tru1I TTAA 1 cut(s) 246
Tru9I TTAA 1 cut(s) 246
TscAI CASTG 1 cut(s) 265
TseFI GTSAC 1 cut(s) 256
Tsp45I GTSAC 1 cut(s) 256
TspDTI ATGAA 1 cut(s) 284
TspRI CASTG 1 cut(s) 265
Vha464I CTTAAG 1 cut(s) 245
XapI RAATTY 2 cut(s) 286, 307
XmiI GTMKAC 1 cut(s) 5
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.