RLG00000031058

Malonyl-CoA decarboxylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0021428
Physical Location & Seq
Forward (+)
1654454 .. 1658595
4142 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031058

Sequence Viewer

Length: 549 bp
ATGGAAGCGCAAACAAGTACCAAGGTAGAAGAACGAGACTCTTCTGATGACAGGCATTGTTGGATTTGCGATATGAGTGGTGAACACAGTACTGAAATGTGCCCCAAAAGATCCAAGGCGTATGTAATGCTTTGTGGATTTGTGATGATGAACCATGCGAAGATGAGGCTGACCACAAGGAAGAACTCCTTTTTTGTGATATTTGTAATGAGGGATTTTGAGGTTGTAAGTGAGTCCATGCACTCTGCAATTTCAATGAGTAAAACTGAAGTCTTGGATTCTGTGCTGAGTGATTTCTCAGAGGGATATTTCAGCCTTTCGTATGAGAATCGTCGAAAATTGCTTGTGCAACTTGCCAAAGAGTATGATGTTAATAGGACACAAGTTCGCGATTTGATAAAGCAGTATTTGGGACTTGAGCCTCCTGGAACTGGAAGTGAGTTTCATGTTGTTAGAGACTGCATCAAGTCCCATGAAAAAAAAAGTCAGATAATTTGGAGTGCTGATCAACTTCACATGCTGGTAGCTTTAGAAGTTCTGACCTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006084 GO:0006085 GO:0006139 GO:0006163 GO:0006164 GO:0006195 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009154 GO:0009165 GO:0009166 GO:0009259 GO:0009260 GO:0009261 GO:0009893 GO:0009987 GO:0010565 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019216 GO:0019217 GO:0019222 GO:0019438 GO:0019439 GO:0019637 GO:0019693 GO:0031323 GO:0031325 GO:0031974 GO:0033865 GO:0033866 GO:0033869 GO:0033875 GO:0034030 GO:0034031 GO:0034032 GO:0034033 GO:0034034 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0035383 GO:0035384 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044272 GO:0044273 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045834 GO:0045923 GO:0046320 GO:0046321 GO:0046390 GO:0046434 GO:0046483 GO:0046700 GO:0048518 GO:0048522 GO:0050080 GO:0050789 GO:0050794 GO:0051186 GO:0051188 GO:0055086 GO:0062012 GO:0062013 GO:0065007 GO:0070013 GO:0071616 GO:0071704 GO:0072521 GO:0072522 GO:0072523 GO:0080090 GO:0090407 GO:1901135 GO:1901136 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:2001293 GO:2001294
KEGG Pathways
Metabolic & Signaling
ko00410 ko00640 ko01100 ko04146 ko04152 map00410 map00640 map01100 map04146 map04152
Pfam Domains
Protein Families
MCD MCD_N

Protein Analysis

183

Amino Acids

21.02

Weight (kDa)

6.16

Isoelectric Point (pI)

40.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021428)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0002771
rosa_laevigata RLG00000031058
rosa_rugosa Rorug04G0399300 Rorug04G0399400
rosa_samantha Rh5CG024800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 390
AclWI GGATC 1 cut(s) 105
AcuI CTGAAG 1 cut(s) 288
AfaI GTAC 2 cut(s) 19, 91
AfiI CCNNNNNNNGG 1 cut(s) 431
AgsI TTSAA 1 cut(s) 255
AjnI CCWGG 1 cut(s) 424
AluBI AGCT 1 cut(s) 527
AluI AGCT 1 cut(s) 527
Alw26I GTCTC 2 cut(s) 30, 450
AlwI GGATC 1 cut(s) 105
AspLEI GCGC 1 cut(s) 10
AsuHPI GGTGA 1 cut(s) 92
BaeGI GKGCMC 1 cut(s) 104
BciT130I CCWGG 1 cut(s) 426
BclI TGATCA 1 cut(s) 505
BcoDI GTCTC 2 cut(s) 30, 450
BmcAI AGTACT 1 cut(s) 91
Bme1390I CCNGG 1 cut(s) 426
BmrFI CCNGG 1 cut(s) 426
BmsI GCATC 1 cut(s) 471
BpuEI CTTGAG 1 cut(s) 437
BsaJI CCNNGG 2 cut(s) 21, 114
Bsc4I CCNNNNNNNGG 1 cut(s) 431
Bse1I ACTGG 1 cut(s) 436
BseBI CCWGG 1 cut(s) 426
BseDI CCNNGG 2 cut(s) 21, 114
BseLI CCNNNNNNNGG 1 cut(s) 431
BseMII CTCAG 2 cut(s) 278, 312
BseNI ACTGG 1 cut(s) 436
BseSI GKGCMC 1 cut(s) 104
Bsh1236I CGCG 1 cut(s) 390
BslFI GGGAC 2 cut(s) 426, 454
BslI CCNNNNNNNGG 1 cut(s) 431
BsmAI GTCTC 2 cut(s) 30, 450
BsmFI GGGAC 2 cut(s) 426, 454
Bsp1286I GDGCHC 1 cut(s) 104
Bsp143I GATC 2 cut(s) 110, 505
Bsp68I TCGCGA 1 cut(s) 390
BspCNI CTCAG 2 cut(s) 279, 311
BspFNI CGCG 1 cut(s) 390
BspPI GGATC 1 cut(s) 105
BsrI ACTGG 1 cut(s) 436
BssECI CCNNGG 2 cut(s) 21, 114
BssMI GATC 2 cut(s) 110, 505
BssT1I CCWWGG 2 cut(s) 21, 114
Bst2UI CCWGG 1 cut(s) 426
Bst4CI ACNGT 1 cut(s) 89
Bst6I CTCTTC 1 cut(s) 46
BstDEI CTNAG 2 cut(s) 287, 298
BstFNI CGCG 1 cut(s) 390
BstHHI GCGC 1 cut(s) 10
BstKTI GATC 2 cut(s) 113, 508
BstMAI GTCTC 2 cut(s) 30, 450
BstMBI GATC 2 cut(s) 110, 505
BstNI CCWGG 1 cut(s) 426
BstNSI RCATGY 1 cut(s) 520
BstSCI CCNGG 1 cut(s) 424
BstSLI GKGCMC 1 cut(s) 104
BstUI CGCG 1 cut(s) 390
BstX2I RGATCY 1 cut(s) 110
BstYI RGATCY 1 cut(s) 110
BtuMI TCGCGA 1 cut(s) 390
CfoI GCGC 1 cut(s) 10
Csp6I GTAC 2 cut(s) 18, 90
CviAII CATG 5 cut(s) 155, 238, 446, 473, 517
CviJI RGCY 4 cut(s) 169, 315, 421, 527
CviKI_1 RGCY 4 cut(s) 169, 315, 421, 527
CviQI GTAC 2 cut(s) 18, 90
DdeI CTNAG 2 cut(s) 287, 298
DpnI GATC 2 cut(s) 112, 507
DpnII GATC 2 cut(s) 110, 505
Eam1104I CTCTTC 1 cut(s) 46
EarI CTCTTC 1 cut(s) 46
Eco130I CCWWGG 2 cut(s) 21, 114
Eco57I CTGAAG 1 cut(s) 288
EcoRII CCWGG 1 cut(s) 424
EcoT14I CCWWGG 2 cut(s) 21, 114
ErhI CCWWGG 2 cut(s) 21, 114
FaeI CATG 5 cut(s) 158, 241, 449, 476, 520
FalI AAGNNNNNCTT 2 cut(s) 173, 205
FaqI GGGAC 2 cut(s) 426, 454
FatI CATG 5 cut(s) 154, 237, 445, 472, 516
FbaI TGATCA 1 cut(s) 505
GlaI GCGC 1 cut(s) 9
HhaI GCGC 1 cut(s) 10
Hin1II CATG 5 cut(s) 158, 241, 449, 476, 520
Hin6I GCGC 1 cut(s) 8
HinP1I GCGC 1 cut(s) 8
HinfI GANTC 4 cut(s) 38, 233, 278, 328
HphI GGTGA 1 cut(s) 92
Hpy166II GTNNAC 1 cut(s) 83
Hpy188I TCNGA 4 cut(s) 46, 301, 489, 540
Hpy188III TCNNGA 1 cut(s) 389
Hpy8I GTNNAC 1 cut(s) 83
Hpy99I CGWCG 1 cut(s) 336
HpyCH4III ACNGT 1 cut(s) 89
HpyCH4V TGCA 4 cut(s) 241, 248, 349, 462
HpyF3I CTNAG 2 cut(s) 287, 298
Hsp92II CATG 5 cut(s) 158, 241, 449, 476, 520
HspAI GCGC 1 cut(s) 8
Ksp22I TGATCA 1 cut(s) 505
Kzo9I GATC 2 cut(s) 110, 505
LpnPI CCDG 5 cut(s) 37, 411, 417, 438, 506
LweI GCATC 1 cut(s) 471
MalI GATC 2 cut(s) 112, 507
MboI GATC 2 cut(s) 110, 505
MboII GAAGA 4 cut(s) 33, 41, 172, 193
MflI RGATCY 1 cut(s) 110
MhlI GDGCHC 1 cut(s) 104
MluCI AATT 3 cut(s) 249, 338, 492
MlyI GAGTC 2 cut(s) 32, 242
MmeI TCCRAC 1 cut(s) 41
MnlI CCTC 5 cut(s) 159, 204, 214, 295, 432
MseI TTAA 1 cut(s) 372
MspR9I CCNGG 1 cut(s) 426
MvaI CCWGG 1 cut(s) 426
MvnI CGCG 1 cut(s) 390
NdeII GATC 2 cut(s) 110, 505
NlaIII CATG 5 cut(s) 158, 241, 449, 476, 520
NruI TCGCGA 1 cut(s) 390
NspI RCATGY 1 cut(s) 520
PfeI GAWTC 2 cut(s) 278, 328
PfoI TCCNGGA 1 cut(s) 424
PleI GAGTC 2 cut(s) 32, 241
PpsI GAGTC 2 cut(s) 32, 241
Psp6I CCWGG 1 cut(s) 424
PspGI CCWGG 1 cut(s) 424
PsuI RGATCY 1 cut(s) 110
RruI TCGCGA 1 cut(s) 390
RsaI GTAC 2 cut(s) 19, 91
RsaNI GTAC 2 cut(s) 18, 90
SaqAI TTAA 1 cut(s) 372
Sau3AI GATC 2 cut(s) 110, 505
ScaI AGTACT 1 cut(s) 91
SchI GAGTC 2 cut(s) 32, 242
ScrFI CCNGG 1 cut(s) 426
SduI GDGCHC 1 cut(s) 104
SetI ASST 4 cut(s) 27, 225, 529, 545
SfaNI GCATC 1 cut(s) 471
SmlI CTYRAG 1 cut(s) 416
SmoI CTYRAG 1 cut(s) 416
Sse9I AATT 3 cut(s) 249, 338, 492
StyD4I CCNGG 1 cut(s) 424
StyI CCWWGG 2 cut(s) 21, 114
TaaI ACNGT 1 cut(s) 89
TaqI TCGA 1 cut(s) 334
TasI AATT 3 cut(s) 249, 338, 492
TatI WGTACW 1 cut(s) 89
TfiI GAWTC 2 cut(s) 278, 328
Tru1I TTAA 1 cut(s) 372
Tru9I TTAA 1 cut(s) 372
TspDTI ATGAA 3 cut(s) 164, 434, 489
XceI RCATGY 1 cut(s) 520
ZrmI AGTACT 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.