RchiOBHm_Chr5g0012341

Pollen-specific leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0015799
Physical Location & Seq
Reverse (-)
8299160 .. 8300295
1136 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29292

Sequence Viewer

Length: 1023 bp
ATGAAAGCCTCAGGCTGCATACTATCTTTCTTTTTTGTCTTCTCTTCTATCTCATCCCTTTCTGTAGCTCTAACAGATGCCGAAGCGTCCTTTCTTGCCCGTCGCCAGCTGCTAACCCTCCCGGAAGGCGGTGACCTACCCGAAAACTACGAAAATGGGGTTGAGCCGAACCTGAAGTTCCCTAACCCCAGGCTTCGACGTGCATACATTGCACTCCAGGCTTGGAAGAAGAGCATGTACTCCGACCCTCTAAAGACAACTGCAAACTGGGTTGGTCCTGATGTATGTAAATACACGGGAGTGTTCTGTGAAAAGGCTCTTGATGACCCAAATATCGACGTCGTGGCCAGCATTGATCTCAATGGGGCTGACATTGCAGGATTCCTTCCTGCTGAGTTAGGCCTGTTACATGAGGTTGCGGTGTTCCACATCAACTCCAACAGGTTCTGTGGTATCGTGCCCCAAAGCTTTTGCCAGCTGAGTCTCCTCCACGAGTTTGATATCAGCAACAACCGGTTTGTGGGTGAATTCCCTAAGGTGGTTCACTGCCTTCCGGCCCTCAGGTACCTGGACATCAGGTACAATGACTTTGAGGGGTGTCTGCCACCTGAGCTATTCAACAAGGATCTGGATGCCTTGTTCCTCAACAACAACAGGTTCAGATGCAACATTCCAGAGACGATTGGCAACTCCAATGTCTCGGTCCTCGTCATCGCCAACAACAACTTCGAGGGTTGCATTCCTAGCAGCATCGGGAAAATGAGGAACTTGAACGAGCTAATCTTCTCGAACAACAAGCTAGGCGGGTGTGTGCCACCCGAGCTCTTCCAGATCTCGAACGTGACTGTGTTGGACATCAGTTCAAACACATTCAGCGGCATCCTGTCAAAATCCTTCAAAATCGAGAACGTGGAGGAGTTCAGCCTTGCAAACAACAACCTGACCGGAACTTCACATTCTCCAACAACTTCTTCAACGGCGCTGCCAAAGAATGCGTGCCAACCTCGAGGCAGGACATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 LRR_8

Protein Analysis

340

Amino Acids

37.54

Weight (kDa)

5.47

Isoelectric Point (pI)

37.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 140 - 197 5.7e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015799)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06800
malus_domestica MD05G1294100.v1.1 MD10G1272100.v1.1 MD10G1272200.v1.1
prunus_persica Prupe.4G069900_v2.0.a1
pyrus_communis pycom10g22760
rosa_chinensis RchiOBHm_Chr5g0012341
rosa_laevigata RLG00000031905
rosa_multiflora Rmu_ssc0000217.1_g000010
rosa_rugosa Rorug05G0000600
rosa_samantha Rh5AG094700 Rh5BG090900 Rh5CG104000 Rh5DG090400
rosa_wichuraiana Rw5G008270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 342
AbsI CCTCGAGG 1 cut(s) 1005
Acc65I GGTACC 1 cut(s) 564
AccB1I GGYRCC 1 cut(s) 564
AciI CCGC 4 cut(s) 129, 419, 804, 876
AclWI GGATC 1 cut(s) 633
AcoI YGGCCR 1 cut(s) 345
AcsI RAATTY 1 cut(s) 527
AcuI CTGAAG 1 cut(s) 194
AcyI GRCGYC 1 cut(s) 339
AfaI GTAC 3 cut(s) 239, 566, 581
AfiI CCNNNNNNNGG 3 cut(s) 128, 520, 538
AgeI ACCGGT 1 cut(s) 513
AgsI TTSAA 5 cut(s) 619, 772, 864, 898, 975
AjiI CACGTC 1 cut(s) 200
AjnI CCWGG 3 cut(s) 188, 216, 567
AjuI GAANNNNNNNTTGG 4 cut(s) 710, 742, 955, 987
AleI CACNNNNGTG 1 cut(s) 299
AloI GAACNNNNNNTCC 2 cut(s) 623, 655
AluBI AGCT 8 cut(s) 68, 109, 468, 478, 613, 778, 799, 823
AluI AGCT 8 cut(s) 68, 109, 468, 478, 613, 778, 799, 823
Alw21I GWGCWC 1 cut(s) 825
Alw26I GTCTC 3 cut(s) 488, 671, 703
AlwI GGATC 1 cut(s) 633
AlwNI CAGNNNCTG 1 cut(s) 447
Ama87I CYCGRG 2 cut(s) 818, 1005
AoxI GGCC 3 cut(s) 345, 400, 555
ApeKI GCWGC 4 cut(s) 15, 109, 747, 982
ApoI RAATTY 1 cut(s) 527
AsiGI ACCGGT 1 cut(s) 513
Asp718I GGTACC 1 cut(s) 564
AspLEI GCGC 1 cut(s) 982
AspS9I GGNCC 3 cut(s) 275, 556, 703
AsuC2I CCSGG 1 cut(s) 122
AsuHPI GGTGA 2 cut(s) 143, 536
AvaI CYCGRG 2 cut(s) 818, 1005
AvaII GGWCC 2 cut(s) 275, 703
AxyI CCTNAGG 3 cut(s) 10, 534, 560
BaeGI GKGCMC 1 cut(s) 462
BalI TGGCCA 1 cut(s) 347
BanI GGYRCC 1 cut(s) 564
BanII GRGCYC 1 cut(s) 825
BarI GAAGNNNNNNTAC 2 cut(s) 221, 253
BauI CACGAG 1 cut(s) 491
BbsI GAAGAC 1 cut(s) 31
Bbv12I GWGCWC 1 cut(s) 825
BbvI GCAGC 4 cut(s) 2, 96, 759, 969
BceAI ACGGC 1 cut(s) 993
BciT130I CCWGG 3 cut(s) 190, 218, 569
BcnI CCSGG 1 cut(s) 122
BcoDI GTCTC 3 cut(s) 488, 671, 703
BfaI CTAG 2 cut(s) 744, 800
BfmI CTRYAG 1 cut(s) 63
BfoI RGCGCY 1 cut(s) 983
BglII AGATCT 1 cut(s) 831
BisI GCNGC 5 cut(s) 16, 110, 748, 877, 983
BlsI GCNGC 5 cut(s) 17, 111, 749, 878, 984
Bme1390I CCNGG 4 cut(s) 122, 190, 218, 569
Bme18I GGWCC 2 cut(s) 275, 703
BmeT110I CYCGRG 2 cut(s) 818, 1005
BmgBI CACGTC 1 cut(s) 200
BmgT120I GGNCC 3 cut(s) 275, 556, 703
BmiI GGNNCC 1 cut(s) 566
BmrFI CCNGG 4 cut(s) 122, 190, 218, 569
BmrI ACTGGG 1 cut(s) 277
BmsI GCATC 5 cut(s) 67, 622, 653, 759, 888
BmuI ACTGGG 1 cut(s) 277
BpiI GAAGAC 1 cut(s) 31
BpmI CTGGAG 1 cut(s) 200
Bpu10I CCTNAGC 1 cut(s) 609
BpuMI CCSGG 1 cut(s) 122
BsaHI GRCGYC 1 cut(s) 339
BsaJI CCNNGG 1 cut(s) 188
BsaWI WCCGGW 2 cut(s) 513, 944
BsaXI ACNNNNNCTCC 2 cut(s) 419, 449
Bsc4I CCNNNNNNNGG 3 cut(s) 128, 520, 538
Bse118I RCCGGY 1 cut(s) 513
Bse1I ACTGG 1 cut(s) 272
Bse21I CCTNAGG 3 cut(s) 10, 534, 560
Bse3DI GCAATG 2 cut(s) 207, 372
BseBI CCWGG 3 cut(s) 190, 218, 569
BseDI CCNNGG 1 cut(s) 188
BseGI GGATG 3 cut(s) 53, 637, 879
BseLI CCNNNNNNNGG 3 cut(s) 128, 520, 538
BseMI GCAATG 2 cut(s) 207, 372
BseMII CTCAG 5 cut(s) 24, 384, 470, 574, 600
BseNI ACTGG 1 cut(s) 272
BseRI GAGGAG 2 cut(s) 476, 929
BseSI GKGCMC 1 cut(s) 462
BseXI GCAGC 4 cut(s) 2, 96, 759, 969
BshFI GGCC 3 cut(s) 347, 402, 557
BshNI GGYRCC 1 cut(s) 564
BshTI ACCGGT 1 cut(s) 513
BsiHKAI GWGCWC 1 cut(s) 825
BsiHKCI CYCGRG 2 cut(s) 818, 1005
BsiSI CCGG 4 cut(s) 122, 514, 554, 945
BslI CCNNNNNNNGG 3 cut(s) 128, 520, 538
BsmAI GTCTC 3 cut(s) 488, 671, 703
BsmBI CGTCTC 1 cut(s) 671
BsmI GAATGC 2 cut(s) 738, 997
BsnI GGCC 3 cut(s) 347, 402, 557
BsoBI CYCGRG 2 cut(s) 818, 1005
Bsp1286I GDGCHC 2 cut(s) 462, 825
Bsp143I GATC 3 cut(s) 355, 625, 831
BspACI CCGC 4 cut(s) 129, 419, 804, 876
BspANI GGCC 3 cut(s) 347, 402, 557
BspCNI CTCAG 5 cut(s) 23, 385, 471, 573, 601
BspLI GGNNCC 1 cut(s) 566
BspPI GGATC 1 cut(s) 633
BspQI GCTCTTC 2 cut(s) 224, 830
BspT107I GGYRCC 1 cut(s) 564
BsrDI GCAATG 2 cut(s) 207, 372
BsrFI RCCGGY 1 cut(s) 513
BsrI ACTGG 1 cut(s) 272
BssAI RCCGGY 1 cut(s) 513
BssECI CCNNGG 1 cut(s) 188
BssMI GATC 3 cut(s) 355, 625, 831
BssNI GRCGYC 1 cut(s) 339
BssSI CACGAG 1 cut(s) 491
Bst2BI CACGAG 1 cut(s) 491
Bst2UI CCWGG 3 cut(s) 190, 218, 569
Bst4CI ACNGT 1 cut(s) 847
Bst6I CTCTTC 3 cut(s) 49, 224, 830
BstACI GRCGYC 1 cut(s) 339
BstAPI GCANNNNNTGC 1 cut(s) 209
BstC8I GCNNGC 4 cut(s) 107, 349, 476, 997
BstDEI CTNAG 6 cut(s) 10, 393, 479, 534, 560, 609
BstEII GGTNACC 1 cut(s) 131
BstF5I GGATG 3 cut(s) 53, 637, 879
BstH2I RGCGCY 1 cut(s) 983
BstHHI GCGC 1 cut(s) 982
BstKTI GATC 3 cut(s) 358, 628, 834
BstMAI GTCTC 3 cut(s) 488, 671, 703
BstMBI GATC 3 cut(s) 355, 625, 831
BstMWI GCNNNNNNNGC 6 cut(s) 209, 218, 374, 610, 744, 820
BstNI CCWGG 3 cut(s) 190, 218, 569
BstNSI RCATGY 1 cut(s) 238
BstPI GGTNACC 1 cut(s) 131
BstSCI CCNGG 4 cut(s) 120, 188, 216, 567
BstSFI CTRYAG 1 cut(s) 63
BstSLI GKGCMC 1 cut(s) 462
BstV1I GCAGC 4 cut(s) 2, 96, 759, 969
BstV2I GAAGAC 1 cut(s) 31
BstX2I RGATCY 2 cut(s) 625, 831
BstYI RGATCY 2 cut(s) 625, 831
Bsu36I CCTNAGG 3 cut(s) 10, 534, 560
BsuRI GGCC 3 cut(s) 347, 402, 557
BtgZI GCGATG 1 cut(s) 697
BtrI CACGTC 1 cut(s) 200
BtsCI GGATG 3 cut(s) 53, 637, 879
BtsI GCAGTG 1 cut(s) 544
BtsIMutI CAGTG 1 cut(s) 544
Cac8I GCNNGC 4 cut(s) 107, 349, 476, 997
CaiI CAGNNNCTG 1 cut(s) 447
CfoI GCGC 1 cut(s) 982
Cfr10I RCCGGY 1 cut(s) 513
Cfr13I GGNCC 3 cut(s) 275, 556, 703
CseI GACGC 1 cut(s) 75
Csp6I GTAC 3 cut(s) 238, 565, 580
CspAI ACCGGT 1 cut(s) 513
CviAII CATG 3 cut(s) 235, 410, 1017
CviQI GTAC 3 cut(s) 238, 565, 580
DdeI CTNAG 6 cut(s) 10, 393, 479, 534, 560, 609
DpnI GATC 3 cut(s) 357, 627, 833
DpnII GATC 3 cut(s) 355, 625, 831
EaeI YGGCCR 1 cut(s) 345
Eam1104I CTCTTC 3 cut(s) 49, 224, 830
EarI CTCTTC 3 cut(s) 49, 224, 830
Ecl136II GAGCTC 1 cut(s) 823
Eco147I AGGCCT 1 cut(s) 402
Eco24I GRGCYC 1 cut(s) 825
Eco32I GATATC 1 cut(s) 502
Eco47I GGWCC 2 cut(s) 275, 703
Eco53kI GAGCTC 1 cut(s) 823
Eco57I CTGAAG 1 cut(s) 194
Eco81I CCTNAGG 3 cut(s) 10, 534, 560
Eco88I CYCGRG 2 cut(s) 818, 1005
Eco91I GGTNACC 1 cut(s) 131
EcoICRI GAGCTC 1 cut(s) 823
EcoO65I GGTNACC 1 cut(s) 131
EcoRI GAATTC 1 cut(s) 527
EcoRII CCWGG 3 cut(s) 188, 216, 567
EcoRV GATATC 1 cut(s) 502
EcoT38I GRGCYC 1 cut(s) 825
Esp3I CGTCTC 1 cut(s) 671
FaeI CATG 3 cut(s) 238, 413, 1020
FaiI YATR 6 cut(s) 20, 205, 236, 286, 411, 1018
FatI CATG 3 cut(s) 234, 409, 1016
FauI CCCGC 1 cut(s) 797
Fnu4HI GCNGC 5 cut(s) 16, 110, 748, 877, 983
FokI GGATG 3 cut(s) 40, 644, 866
FriOI GRGCYC 1 cut(s) 825
Fsp4HI GCNGC 5 cut(s) 16, 110, 748, 877, 983
FspBI CTAG 2 cut(s) 744, 800
GlaI GCGC 1 cut(s) 981
GluI GCNGC 5 cut(s) 16, 110, 748, 877, 983
GsuI CTGGAG 1 cut(s) 200
HaeII RGCGCY 1 cut(s) 983
HaeIII GGCC 3 cut(s) 347, 402, 557
HapII CCGG 4 cut(s) 122, 514, 554, 945
HgaI GACGC 1 cut(s) 75
HhaI GCGC 1 cut(s) 982
Hin1I GRCGYC 1 cut(s) 339
Hin1II CATG 3 cut(s) 238, 413, 1020
Hin6I GCGC 1 cut(s) 980
HinP1I GCGC 1 cut(s) 980
HindIII AAGCTT 1 cut(s) 466
HinfI GANTC 2 cut(s) 381, 481
HpaII CCGG 4 cut(s) 122, 514, 554, 945
HphI GGTGA 2 cut(s) 143, 536
Hpy166II GTNNAC 1 cut(s) 544
Hpy188I TCNGA 2 cut(s) 244, 662
Hpy188III TCNNGA 9 cut(s) 278, 320, 629, 674, 754, 787, 829, 835, 904
Hpy8I GTNNAC 1 cut(s) 544
Hpy99I CGWCG 4 cut(s) 105, 201, 341, 344
HpyAV CCTTC 4 cut(s) 119, 395, 560, 904
HpyCH4III ACNGT 1 cut(s) 847
HpyCH4IV ACGT 4 cut(s) 199, 339, 840, 909
HpyCH4V TGCA 8 cut(s) 18, 203, 212, 263, 377, 666, 738, 929
HpyF10VI GCNNNNNNNGC 6 cut(s) 209, 218, 374, 610, 744, 820
HpyF3I CTNAG 6 cut(s) 10, 393, 479, 534, 560, 609
HpySE526I ACGT 4 cut(s) 199, 339, 840, 909
Hsp92I GRCGYC 1 cut(s) 339
Hsp92II CATG 3 cut(s) 238, 413, 1020
HspAI GCGC 1 cut(s) 980
KpnI GGTACC 1 cut(s) 568
Kzo9I GATC 3 cut(s) 355, 625, 831
LguI GCTCTTC 2 cut(s) 224, 830
Lsp1109I GCAGC 4 cut(s) 2, 96, 759, 969
LweI GCATC 5 cut(s) 67, 622, 653, 759, 888
MaeI CTAG 2 cut(s) 744, 800
MaeII ACGT 4 cut(s) 199, 339, 840, 909
MaeIII GTNAC 3 cut(s) 131, 405, 841
MalI GATC 3 cut(s) 357, 627, 833
MboI GATC 3 cut(s) 355, 625, 831
MboII GAAGA 7 cut(s) 31, 36, 238, 241, 775, 817, 963
MflI RGATCY 2 cut(s) 625, 831
MhlI GDGCHC 2 cut(s) 462, 825
MlsI TGGCCA 1 cut(s) 347
MluCI AATT 1 cut(s) 527
MluNI TGGCCA 1 cut(s) 347
MlyI GAGTC 1 cut(s) 490
MmeI TCCRAC 4 cut(s) 267, 462, 831, 986
Mox20I TGGCCA 1 cut(s) 347
MscI TGGCCA 1 cut(s) 347
MslI CAYNNNNRTG 1 cut(s) 299
Msp20I TGGCCA 1 cut(s) 347
MspA1I CMGCKG 3 cut(s) 109, 478, 876
MspI CCGG 4 cut(s) 122, 514, 554, 945
MspR9I CCNGG 4 cut(s) 122, 190, 218, 569
Mva1269I GAATGC 2 cut(s) 738, 997
MvaI CCWGG 3 cut(s) 190, 218, 569
MwoI GCNNNNNNNGC 6 cut(s) 209, 218, 374, 610, 744, 820
NciI CCSGG 1 cut(s) 122
NdeII GATC 3 cut(s) 355, 625, 831
NlaIII CATG 3 cut(s) 238, 413, 1020
NlaIV GGNNCC 1 cut(s) 566
NmuCI GTSAC 2 cut(s) 131, 841
NspI RCATGY 1 cut(s) 238
OliI CACNNNNGTG 1 cut(s) 299
PaeR7I CTCGAG 1 cut(s) 1005
PceI AGGCCT 1 cut(s) 402
PciSI GCTCTTC 2 cut(s) 224, 830
PctI GAATGC 2 cut(s) 738, 997
PfeI GAWTC 1 cut(s) 381
PfoI TCCNGGA 1 cut(s) 120
PinAI ACCGGT 1 cut(s) 513
PkrI GCNGC 5 cut(s) 17, 111, 749, 878, 984
PleI GAGTC 1 cut(s) 489
PpsI GAGTC 1 cut(s) 489
Psp124BI GAGCTC 1 cut(s) 825
Psp6I CCWGG 3 cut(s) 188, 216, 567
PspEI GGTNACC 1 cut(s) 131
PspGI CCWGG 3 cut(s) 188, 216, 567
PspN4I GGNNCC 1 cut(s) 566
PspPI GGNCC 3 cut(s) 275, 556, 703
PspXI VCTCGAGB 1 cut(s) 1005
PstNI CAGNNNCTG 1 cut(s) 447
PsuI RGATCY 2 cut(s) 625, 831
PvuII CAGCTG 2 cut(s) 109, 478
RsaI GTAC 3 cut(s) 239, 566, 581
RsaNI GTAC 3 cut(s) 238, 565, 580
RseI CAYNNNNRTG 1 cut(s) 299
SacI GAGCTC 1 cut(s) 825
SapI GCTCTTC 2 cut(s) 224, 830
SatI GCNGC 5 cut(s) 16, 110, 748, 877, 983
Sau3AI GATC 3 cut(s) 355, 625, 831
Sau96I GGNCC 3 cut(s) 275, 556, 703
SchI GAGTC 1 cut(s) 490
ScrFI CCNGG 4 cut(s) 122, 190, 218, 569
SduI GDGCHC 2 cut(s) 462, 825
SfaNI GCATC 5 cut(s) 67, 622, 653, 759, 888
SfcI CTRYAG 1 cut(s) 63
Sfr274I CTCGAG 1 cut(s) 1005
SinI GGWCC 2 cut(s) 275, 703
SlaI CTCGAG 1 cut(s) 1005
SmiMI CAYNNNNRTG 1 cut(s) 299
SmlI CTYRAG 1 cut(s) 1005
SmoI CTYRAG 1 cut(s) 1005
Sse9I AATT 1 cut(s) 527
SseBI AGGCCT 1 cut(s) 402
SsiI CCGC 4 cut(s) 129, 419, 804, 876
SspMI CTAG 2 cut(s) 744, 800
SstI GAGCTC 1 cut(s) 825
StuI AGGCCT 1 cut(s) 402
StyD4I CCNGG 4 cut(s) 120, 188, 216, 567
TaaI ACNGT 1 cut(s) 847
TaiI ACGT 4 cut(s) 202, 342, 843, 912
TaqI TCGA 7 cut(s) 196, 336, 729, 788, 836, 903, 1006
TaqII GACCGA 1 cut(s) 691
TasI AATT 1 cut(s) 527
TatI WGTACW 1 cut(s) 237
TauI GCSGC 1 cut(s) 879
TfiI GAWTC 1 cut(s) 381
TscAI CASTG 1 cut(s) 551
TseFI GTSAC 2 cut(s) 131, 841
TseI GCWGC 4 cut(s) 15, 109, 747, 982
Tsp45I GTSAC 2 cut(s) 131, 841
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 551
VpaK11BI GGWCC 2 cut(s) 275, 703
XapI RAATTY 1 cut(s) 527
XceI RCATGY 1 cut(s) 238
XhoI CTCGAG 1 cut(s) 1005
XspI CTAG 2 cut(s) 744, 800
ZraI GACGTC 1 cut(s) 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.