RchiOBHm_Chr5g0012741
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0021431
Physical Location & Seq
Reverse (-)
8665843 .. 8666178
336 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29329

Sequence Viewer

Length: 336 bp
ATGTATTGTTTAGTTTTCTTTACATCACTTGGTCCTACACTAGGATCAGCTGCTCAGGCCATCAATGTCTCTGTCAACATGATCTTCACCTTTGCCATAGCCCAAGTGTTCATTGCGATGCTCTGCCACATGAAGTTAATTTGGATTGTTCTTCTTCTTCTCTTATTTCTTCTTGTTCGTGATGACTTGCTTCATCTTCAAGTACCTGCCGGAGACCAAAGCAGTTCCCATCGAAGAGATGGGAAGGGTGTTGGAGCAGCACCCTTTTTGGCGCAAGTATGTGGTTCAAGAGAAAGACATAGCCATGGGCAAGGCGGCACAGACTGTGTAACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sugar_tr

Protein Analysis

111

Amino Acids

12.02

Weight (kDa)

7.76

Isoelectric Point (pI)

35.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021431)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0012741 RchiOBHm_Chr5g0012751
rosa_multiflora Rmu_sc0000089.1_g000008
rosa_roxburghii Rroxscaffold_1G00063860
rosa_rugosa Rorug05G0004000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 214
AciI CCGC 1 cut(s) 315
AclWI GGATC 1 cut(s) 52
AfaI GTAC 1 cut(s) 204
AfiI CCNNNNNNNGG 1 cut(s) 41
AgsI TTSAA 2 cut(s) 200, 288
AluBI AGCT 1 cut(s) 50
AluI AGCT 1 cut(s) 50
Alw26I GTCTC 2 cut(s) 73, 207
AlwI GGATC 1 cut(s) 52
AoxI GGCC 1 cut(s) 57
ApeKI GCWGC 2 cut(s) 50, 257
AspLEI GCGC 1 cut(s) 274
AspS9I GGNCC 1 cut(s) 32
AsuHPI GGTGA 1 cut(s) 79
AvaII GGWCC 1 cut(s) 32
BbvI GCAGC 2 cut(s) 37, 269
BccI CCATC 3 cut(s) 68, 233, 237
BcoDI GTCTC 2 cut(s) 73, 207
BfaI CTAG 2 cut(s) 41, 334
BfuAI ACCTGC 1 cut(s) 214
BisI GCNGC 3 cut(s) 51, 258, 316
BlsI GCNGC 3 cut(s) 52, 259, 317
Bme18I GGWCC 1 cut(s) 32
BmgT120I GGNCC 1 cut(s) 32
BmsI GCATC 1 cut(s) 108
Bpu10I CCTNAGC 1 cut(s) 54
BsaI GGTCTC 1 cut(s) 207
BsaJI CCNNGG 1 cut(s) 304
Bsc4I CCNNNNNNNGG 1 cut(s) 41
Bse3DI GCAATG 1 cut(s) 111
BseDI CCNNGG 1 cut(s) 304
BseLI CCNNNNNNNGG 1 cut(s) 41
BseMI GCAATG 1 cut(s) 111
BseMII CTCAG 1 cut(s) 68
BseXI GCAGC 2 cut(s) 37, 269
BshFI GGCC 1 cut(s) 59
BsiSI CCGG 1 cut(s) 210
BslI CCNNNNNNNGG 1 cut(s) 41
BsmAI GTCTC 2 cut(s) 73, 207
BsnI GGCC 1 cut(s) 59
Bso31I GGTCTC 1 cut(s) 207
Bsp143I GATC 2 cut(s) 44, 81
Bsp19I CCATGG 1 cut(s) 304
BspACI CCGC 1 cut(s) 315
BspANI GGCC 1 cut(s) 59
BspCNI CTCAG 1 cut(s) 67
BspMI ACCTGC 1 cut(s) 214
BspPI GGATC 1 cut(s) 52
BspTNI GGTCTC 1 cut(s) 207
BsrDI GCAATG 1 cut(s) 111
BssECI CCNNGG 1 cut(s) 304
BssMI GATC 2 cut(s) 44, 81
BssT1I CCWWGG 1 cut(s) 304
Bst4CI ACNGT 1 cut(s) 326
Bst6I CTCTTC 1 cut(s) 229
BstDEI CTNAG 1 cut(s) 54
BstDSI CCRYGG 1 cut(s) 304
BstENI CCTNNNNNAGG 1 cut(s) 39
BstHHI GCGC 1 cut(s) 274
BstKTI GATC 2 cut(s) 47, 84
BstMAI GTCTC 2 cut(s) 73, 207
BstMBI GATC 2 cut(s) 44, 81
BstMWI GCNNNNNNNGC 1 cut(s) 56
BstV1I GCAGC 2 cut(s) 37, 269
BsuRI GGCC 1 cut(s) 59
BtgI CCRYGG 1 cut(s) 304
BtgZI GCGATG 1 cut(s) 131
BveI ACCTGC 1 cut(s) 214
CfoI GCGC 1 cut(s) 274
Cfr13I GGNCC 1 cut(s) 32
Csp6I GTAC 1 cut(s) 203
CviAII CATG 3 cut(s) 79, 130, 305
CviJI RGCY 4 cut(s) 50, 59, 101, 303
CviKI_1 RGCY 4 cut(s) 50, 59, 101, 303
CviQI GTAC 1 cut(s) 203
DdeI CTNAG 1 cut(s) 54
DpnI GATC 2 cut(s) 46, 83
DpnII GATC 2 cut(s) 44, 81
Eam1104I CTCTTC 1 cut(s) 229
EarI CTCTTC 1 cut(s) 229
Eco130I CCWWGG 1 cut(s) 304
Eco31I GGTCTC 1 cut(s) 207
Eco47I GGWCC 1 cut(s) 32
EcoNI CCTNNNNNAGG 1 cut(s) 39
EcoT14I CCWWGG 1 cut(s) 304
ErhI CCWWGG 1 cut(s) 304
FaeI CATG 3 cut(s) 82, 133, 308
FaiI YATR 6 cut(s) 80, 98, 131, 280, 300, 306
FatI CATG 3 cut(s) 78, 129, 304
Fnu4HI GCNGC 3 cut(s) 51, 258, 316
Fsp4HI GCNGC 3 cut(s) 51, 258, 316
FspBI CTAG 2 cut(s) 41, 334
GlaI GCGC 1 cut(s) 273
GluI GCNGC 3 cut(s) 51, 258, 316
HaeIII GGCC 1 cut(s) 59
HapII CCGG 1 cut(s) 210
HhaI GCGC 1 cut(s) 274
Hin1II CATG 3 cut(s) 82, 133, 308
Hin6I GCGC 1 cut(s) 272
HinP1I GCGC 1 cut(s) 272
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HpaII CCGG 1 cut(s) 210
HphI GGTGA 1 cut(s) 79
Hpy166II GTNNAC 1 cut(s) 76
Hpy188III TCNNGA 2 cut(s) 179, 288
Hpy8I GTNNAC 1 cut(s) 76
HpyAV CCTTC 1 cut(s) 238
HpyCH4III ACNGT 1 cut(s) 326
HpyF10VI GCNNNNNNNGC 1 cut(s) 56
HpyF3I CTNAG 1 cut(s) 54
Hsp92II CATG 3 cut(s) 82, 133, 308
HspAI GCGC 1 cut(s) 272
Kzo9I GATC 2 cut(s) 44, 81
LmnI GCTCC 1 cut(s) 254
LpnPI CCDG 3 cut(s) 41, 219, 223
Lsp1109I GCAGC 2 cut(s) 37, 269
LweI GCATC 1 cut(s) 108
MaeI CTAG 2 cut(s) 41, 334
MaeIII GTNAC 1 cut(s) 328
MalI GATC 2 cut(s) 46, 83
MboI GATC 2 cut(s) 44, 81
MboII GAAGA 7 cut(s) 76, 143, 146, 149, 161, 188, 246
MluCI AATT 1 cut(s) 138
MmeI TCCRAC 1 cut(s) 232
MseI TTAA 1 cut(s) 137
MslI CAYNNNNRTG 2 cut(s) 116, 303
MspA1I CMGCKG 1 cut(s) 50
MspI CCGG 1 cut(s) 210
MwoI GCNNNNNNNGC 1 cut(s) 56
NcoI CCATGG 1 cut(s) 304
NdeII GATC 2 cut(s) 44, 81
NlaIII CATG 3 cut(s) 82, 133, 308
PkrI GCNGC 3 cut(s) 52, 259, 317
PspPI GGNCC 1 cut(s) 32
PvuII CAGCTG 1 cut(s) 50
RsaI GTAC 1 cut(s) 204
RsaNI GTAC 1 cut(s) 203
RseI CAYNNNNRTG 2 cut(s) 116, 303
SaqAI TTAA 1 cut(s) 137
SatI GCNGC 3 cut(s) 51, 258, 316
Sau3AI GATC 2 cut(s) 44, 81
Sau96I GGNCC 1 cut(s) 32
SetI ASST 4 cut(s) 52, 92, 208, 335
SfaNI GCATC 1 cut(s) 108
SinI GGWCC 1 cut(s) 32
SmiMI CAYNNNNRTG 2 cut(s) 116, 303
Sse9I AATT 1 cut(s) 138
SsiI CCGC 1 cut(s) 315
SspMI CTAG 2 cut(s) 41, 334
StyI CCWWGG 1 cut(s) 304
TaaI ACNGT 1 cut(s) 326
TaqI TCGA 1 cut(s) 232
TasI AATT 1 cut(s) 138
TauI GCSGC 1 cut(s) 318
Tru1I TTAA 1 cut(s) 137
Tru9I TTAA 1 cut(s) 137
TseI GCWGC 2 cut(s) 50, 257
TspDTI ATGAA 3 cut(s) 100, 146, 182
VpaK11BI GGWCC 1 cut(s) 32
XagI CCTNNNNNAGG 1 cut(s) 39
XcmI CCANNNNNNNNNTGG 1 cut(s) 236
XspI CTAG 2 cut(s) 41, 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.