Rroxscaffold_1G00063860
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0021431
Physical Location & Seq
Forward (+)
85619268 .. 85619888
621 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00063860.1

Sequence Viewer

Length: 510 bp
ATGAATGTGATCACTTTCTTTTCTCCTGTCTTGTTCAAAACTATAAGATTCGGAAGCAGTGCTTCTCTCGCTTCTGCTCTGATCACTAATGGGGTTAATTTTTTTGCAACTTTTGTTTCAATTGGTCTTGCTGACGAGTTTGGAAGAAGGTTCATTTTCTTGGAGGGTGGTTTGCAGAAGTTCATAACTCAGGTCGTAGTTGGAAGTGCAATGGCTTGGAAATTTGGTACTGGTGGCAACCCTAGTGAACTATCCAAGGGTTTTGCTGCCATTCTGCCCAAGTGTTCATTGCGATCGATGCTCTGCCACATGAAGTTAATTTGGATTGTTCTTCTTCTTCTCTTATTTCTTCTTGTTCGTGATGACTTGCTTCATCTTCAAGTATCTGCCGGAGACCAAAGCAGTTCCCATCGAAGAGATGGGAAGGGTGTTGGAGCAGCACCCTTTTGGCGCAAGTATGTGGTTCAAGAGAAAGACATAGCCATGGGCAAGGCGGCACAGACTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sugar_tr

Protein Analysis

169

Amino Acids

18.46

Weight (kDa)

9.94

Isoelectric Point (pI)

36.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 1 - 73 1.3e-11 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021431)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0012741 RchiOBHm_Chr5g0012751
rosa_multiflora Rmu_sc0000089.1_g000008
rosa_roxburghii Rroxscaffold_1G00063860
rosa_rugosa Rorug05G0004000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 494
AcsI RAATTY 1 cut(s) 221
AfaI GTAC 1 cut(s) 229
AgsI TTSAA 4 cut(s) 37, 120, 380, 467
Alw26I GTCTC 1 cut(s) 387
ApeKI GCWGC 2 cut(s) 266, 437
ApoI RAATTY 1 cut(s) 221
AspLEI GCGC 1 cut(s) 453
BbvI GCAGC 2 cut(s) 253, 449
BccI CCATC 2 cut(s) 413, 417
BclI TGATCA 2 cut(s) 9, 81
BcoDI GTCTC 1 cut(s) 387
BfaI CTAG 1 cut(s) 243
BisI GCNGC 3 cut(s) 267, 438, 495
BlsI GCNGC 3 cut(s) 268, 439, 496
BmsI GCATC 1 cut(s) 288
Bsa29I ATCGAT 1 cut(s) 296
BsaI GGTCTC 1 cut(s) 387
BsaJI CCNNGG 2 cut(s) 255, 483
Bse1I ACTGG 1 cut(s) 235
Bse3DI GCAATG 2 cut(s) 216, 287
BseCI ATCGAT 1 cut(s) 296
BseDI CCNNGG 2 cut(s) 255, 483
BseMI GCAATG 2 cut(s) 216, 287
BseMII CTCAG 1 cut(s) 203
BseNI ACTGG 1 cut(s) 235
BseXI GCAGC 2 cut(s) 253, 449
Bsh1285I CGRYCG 1 cut(s) 296
BshVI ATCGAT 1 cut(s) 296
BsiEI CGRYCG 1 cut(s) 296
BsiSI CCGG 1 cut(s) 390
BsmAI GTCTC 1 cut(s) 387
Bso31I GGTCTC 1 cut(s) 387
Bsp143I GATC 3 cut(s) 9, 81, 293
Bsp19I CCATGG 1 cut(s) 483
BspACI CCGC 1 cut(s) 494
BspCNI CTCAG 1 cut(s) 202
BspDI ATCGAT 1 cut(s) 296
BspTNI GGTCTC 1 cut(s) 387
BsrDI GCAATG 2 cut(s) 216, 287
BsrI ACTGG 1 cut(s) 235
BssECI CCNNGG 2 cut(s) 255, 483
BssMI GATC 3 cut(s) 9, 81, 293
BssT1I CCWWGG 2 cut(s) 255, 483
Bst4CI ACNGT 1 cut(s) 505
Bst6I CTCTTC 1 cut(s) 409
BstDEI CTNAG 1 cut(s) 189
BstDSI CCRYGG 1 cut(s) 483
BstHHI GCGC 1 cut(s) 453
BstKTI GATC 3 cut(s) 12, 84, 296
BstMAI GTCTC 1 cut(s) 387
BstMBI GATC 3 cut(s) 9, 81, 293
BstMCI CGRYCG 1 cut(s) 296
BstMWI GCNNNNNNNGC 2 cut(s) 68, 298
BstV1I GCAGC 2 cut(s) 253, 449
Bsu15I ATCGAT 1 cut(s) 296
BsuTUI ATCGAT 1 cut(s) 296
BtgI CCRYGG 1 cut(s) 483
BtsI GCAGTG 1 cut(s) 64
BtsIMutI CAGTG 1 cut(s) 64
CfoI GCGC 1 cut(s) 453
ClaI ATCGAT 1 cut(s) 296
Csp6I GTAC 1 cut(s) 228
CviAII CATG 2 cut(s) 310, 484
CviJI RGCY 2 cut(s) 215, 482
CviKI_1 RGCY 2 cut(s) 215, 482
CviQI GTAC 1 cut(s) 228
DdeI CTNAG 1 cut(s) 189
DpnI GATC 3 cut(s) 11, 83, 295
DpnII GATC 3 cut(s) 9, 81, 293
Eam1104I CTCTTC 1 cut(s) 409
EarI CTCTTC 1 cut(s) 409
Eco130I CCWWGG 2 cut(s) 255, 483
Eco31I GGTCTC 1 cut(s) 387
EcoT14I CCWWGG 2 cut(s) 255, 483
ErhI CCWWGG 2 cut(s) 255, 483
FaeI CATG 2 cut(s) 313, 487
FaiI YATR 6 cut(s) 44, 185, 311, 459, 479, 485
FalI AAGNNNNNCTT 2 cut(s) 46, 78
FatI CATG 2 cut(s) 309, 483
FbaI TGATCA 2 cut(s) 9, 81
Fnu4HI GCNGC 3 cut(s) 267, 438, 495
Fsp4HI GCNGC 3 cut(s) 267, 438, 495
FspBI CTAG 1 cut(s) 243
GlaI GCGC 1 cut(s) 452
GluI GCNGC 3 cut(s) 267, 438, 495
HapII CCGG 1 cut(s) 390
HhaI GCGC 1 cut(s) 453
Hin1II CATG 2 cut(s) 313, 487
Hin6I GCGC 1 cut(s) 451
HinP1I GCGC 1 cut(s) 451
HinfI GANTC 1 cut(s) 48
HpaII CCGG 1 cut(s) 390
Hpy166II GTNNAC 1 cut(s) 248
Hpy188I TCNGA 2 cut(s) 53, 81
Hpy188III TCNNGA 2 cut(s) 359, 467
Hpy8I GTNNAC 1 cut(s) 248
HpyAV CCTTC 2 cut(s) 141, 418
HpyCH4III ACNGT 1 cut(s) 505
HpyCH4V TGCA 3 cut(s) 107, 175, 209
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 298
HpyF3I CTNAG 1 cut(s) 189
Hsp92II CATG 2 cut(s) 313, 487
HspAI GCGC 1 cut(s) 451
Ksp22I TGATCA 2 cut(s) 9, 81
Kzo9I GATC 3 cut(s) 9, 81, 293
LmnI GCTCC 1 cut(s) 434
LpnPI CCDG 4 cut(s) 39, 176, 216, 403
Lsp1109I GCAGC 2 cut(s) 253, 449
LweI GCATC 1 cut(s) 288
MaeI CTAG 1 cut(s) 243
MalI GATC 3 cut(s) 11, 83, 295
MboI GATC 3 cut(s) 9, 81, 293
MboII GAAGA 7 cut(s) 156, 323, 326, 329, 341, 368, 426
MfeI CAATTG 1 cut(s) 120
MluCI AATT 4 cut(s) 97, 120, 221, 318
MmeI TCCRAC 2 cut(s) 181, 412
MnlI CCTC 1 cut(s) 157
MseI TTAA 2 cut(s) 96, 317
MslI CAYNNNNRTG 1 cut(s) 482
MspI CCGG 1 cut(s) 390
MunI CAATTG 1 cut(s) 120
MwoI GCNNNNNNNGC 2 cut(s) 68, 298
NcoI CCATGG 1 cut(s) 483
NdeII GATC 3 cut(s) 9, 81, 293
NlaIII CATG 2 cut(s) 313, 487
PfeI GAWTC 1 cut(s) 48
PkrI GCNGC 3 cut(s) 268, 439, 496
Ple19I CGATCG 1 cut(s) 296
PvuI CGATCG 1 cut(s) 296
RsaI GTAC 1 cut(s) 229
RsaNI GTAC 1 cut(s) 228
RseI CAYNNNNRTG 1 cut(s) 482
SaqAI TTAA 2 cut(s) 96, 317
SatI GCNGC 3 cut(s) 267, 438, 495
Sau3AI GATC 3 cut(s) 9, 81, 293
SetI ASST 2 cut(s) 152, 195
SfaNI GCATC 1 cut(s) 288
SmiMI CAYNNNNRTG 1 cut(s) 482
Sse9I AATT 4 cut(s) 97, 120, 221, 318
SsiI CCGC 1 cut(s) 494
SspMI CTAG 1 cut(s) 243
StyI CCWWGG 2 cut(s) 255, 483
TaaI ACNGT 1 cut(s) 505
TaqI TCGA 2 cut(s) 296, 412
TasI AATT 4 cut(s) 97, 120, 221, 318
TauI GCSGC 1 cut(s) 497
TfiI GAWTC 1 cut(s) 48
Tru1I TTAA 2 cut(s) 96, 317
Tru9I TTAA 2 cut(s) 96, 317
TscAI CASTG 1 cut(s) 64
TseI GCWGC 2 cut(s) 266, 437
TspDTI ATGAA 6 cut(s) 17, 142, 172, 276, 326, 362
TspRI CASTG 1 cut(s) 64
XapI RAATTY 1 cut(s) 221
XcmI CCANNNNNNNNNTGG 1 cut(s) 416
XspI CTAG 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.