Rmu_sc0000089.1_g000008
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000089.1
Physical Location & Seq
Forward (+)
30650 .. 31284
635 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000089.1_g000008.1.cds

Sequence Viewer

Length: 462 bp
atgaatgtgatcactttctatgctcctgtcttgttcaaaactataagattcggaagcagtgcttctctcgcttctgctctgatcactaatggggttaatttttttgcaacttttgtttcaattggtcttgctgacgagtttggaagaaggttcattttcttggagtatggatcagctgctcaggccatcaacgtctctgtcaacatgatcttcacctttgccatagcccaagtgttcattgcgatgctctgcgacatgaagttaatttggattgttcttcttcttctcttatttcttcttgttcgtaatgacttgcttcatcttcaagtacctgccggagaccaaagcagttcccatcgaagagatgggaatggtgttggagcagcaccctttttggcgcaagtatgtggttcaagagaaagacatagccatgggcaaggcggcacagactgtgtaacctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

153

Amino Acids

16.62

Weight (kDa)

7.79

Isoelectric Point (pI)

32.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021431)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0012741 RchiOBHm_Chr5g0012751
rosa_multiflora Rmu_sc0000089.1_g000008
rosa_roxburghii Rroxscaffold_1G00063860
rosa_rugosa Rorug05G0004000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 340
AciI CCGC 1 cut(s) 441
AclWI GGATC 1 cut(s) 178
AfaI GTAC 1 cut(s) 330
AgsI TTSAA 4 cut(s) 37, 120, 326, 414
AluBI AGCT 1 cut(s) 176
AluI AGCT 1 cut(s) 176
Alw26I GTCTC 2 cut(s) 199, 333
AlwI GGATC 1 cut(s) 178
AoxI GGCC 1 cut(s) 183
ApeKI GCWGC 2 cut(s) 176, 383
AspLEI GCGC 1 cut(s) 400
AsuHPI GGTGA 1 cut(s) 205
BbvI GCAGC 2 cut(s) 163, 395
BccI CCATC 3 cut(s) 194, 359, 363
BclI TGATCA 2 cut(s) 9, 81
BcoDI GTCTC 2 cut(s) 199, 333
BfaI CTAG 1 cut(s) 460
BfuAI ACCTGC 1 cut(s) 340
BisI GCNGC 3 cut(s) 177, 384, 442
BlsI GCNGC 3 cut(s) 178, 385, 443
BmsI GCATC 1 cut(s) 234
Bpu10I CCTNAGC 1 cut(s) 180
BsaI GGTCTC 1 cut(s) 333
BsaJI CCNNGG 1 cut(s) 430
Bse3DI GCAATG 1 cut(s) 237
BseDI CCNNGG 1 cut(s) 430
BseMI GCAATG 1 cut(s) 237
BseMII CTCAG 1 cut(s) 194
BseXI GCAGC 2 cut(s) 163, 395
BshFI GGCC 1 cut(s) 185
BsiSI CCGG 1 cut(s) 336
BsmAI GTCTC 2 cut(s) 199, 333
BsmBI CGTCTC 1 cut(s) 199
BsnI GGCC 1 cut(s) 185
Bso31I GGTCTC 1 cut(s) 333
Bsp143I GATC 4 cut(s) 9, 81, 170, 207
Bsp19I CCATGG 1 cut(s) 430
BspACI CCGC 1 cut(s) 441
BspANI GGCC 1 cut(s) 185
BspCNI CTCAG 1 cut(s) 193
BspMI ACCTGC 1 cut(s) 340
BspPI GGATC 1 cut(s) 178
BspTNI GGTCTC 1 cut(s) 333
BsrDI GCAATG 1 cut(s) 237
BssECI CCNNGG 1 cut(s) 430
BssMI GATC 4 cut(s) 9, 81, 170, 207
BssT1I CCWWGG 1 cut(s) 430
Bst4CI ACNGT 1 cut(s) 452
Bst6I CTCTTC 1 cut(s) 355
BstDEI CTNAG 1 cut(s) 180
BstDSI CCRYGG 1 cut(s) 430
BstHHI GCGC 1 cut(s) 400
BstKTI GATC 4 cut(s) 12, 84, 173, 210
BstMAI GTCTC 2 cut(s) 199, 333
BstMBI GATC 4 cut(s) 9, 81, 170, 207
BstMWI GCNNNNNNNGC 2 cut(s) 68, 182
BstV1I GCAGC 2 cut(s) 163, 395
BsuRI GGCC 1 cut(s) 185
BtgI CCRYGG 1 cut(s) 430
BtgZI GCGATG 1 cut(s) 257
BtsI GCAGTG 1 cut(s) 64
BtsIMutI CAGTG 1 cut(s) 64
BveI ACCTGC 1 cut(s) 340
CfoI GCGC 1 cut(s) 400
Csp6I GTAC 1 cut(s) 329
CviAII CATG 3 cut(s) 205, 256, 431
CviJI RGCY 4 cut(s) 176, 185, 227, 429
CviKI_1 RGCY 4 cut(s) 176, 185, 227, 429
CviQI GTAC 1 cut(s) 329
DdeI CTNAG 1 cut(s) 180
DpnI GATC 4 cut(s) 11, 83, 172, 209
DpnII GATC 4 cut(s) 9, 81, 170, 207
Eam1104I CTCTTC 1 cut(s) 355
EarI CTCTTC 1 cut(s) 355
Eco130I CCWWGG 1 cut(s) 430
Eco31I GGTCTC 1 cut(s) 333
EcoT14I CCWWGG 1 cut(s) 430
ErhI CCWWGG 1 cut(s) 430
Esp3I CGTCTC 1 cut(s) 199
FaeI CATG 3 cut(s) 208, 259, 434
FaiI YATR 9 cut(s) 21, 44, 168, 206, 224, 257, 406, 426, 432
FalI AAGNNNNNCTT 2 cut(s) 46, 78
FatI CATG 3 cut(s) 204, 255, 430
FbaI TGATCA 2 cut(s) 9, 81
Fnu4HI GCNGC 3 cut(s) 177, 384, 442
Fsp4HI GCNGC 3 cut(s) 177, 384, 442
FspBI CTAG 1 cut(s) 460
GlaI GCGC 1 cut(s) 399
GluI GCNGC 3 cut(s) 177, 384, 442
HaeIII GGCC 1 cut(s) 185
HapII CCGG 1 cut(s) 336
HhaI GCGC 1 cut(s) 400
Hin1II CATG 3 cut(s) 208, 259, 434
Hin6I GCGC 1 cut(s) 398
HinP1I GCGC 1 cut(s) 398
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HinfI GANTC 1 cut(s) 48
HpaII CCGG 1 cut(s) 336
HphI GGTGA 1 cut(s) 205
Hpy166II GTNNAC 1 cut(s) 202
Hpy188I TCNGA 2 cut(s) 53, 81
Hpy188III TCNNGA 1 cut(s) 414
Hpy8I GTNNAC 1 cut(s) 202
HpyAV CCTTC 1 cut(s) 141
HpyCH4III ACNGT 1 cut(s) 452
HpyCH4IV ACGT 1 cut(s) 192
HpyCH4V TGCA 1 cut(s) 107
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 182
HpyF3I CTNAG 1 cut(s) 180
HpySE526I ACGT 1 cut(s) 192
Hsp92II CATG 3 cut(s) 208, 259, 434
HspAI GCGC 1 cut(s) 398
Ksp22I TGATCA 2 cut(s) 9, 81
Kzo9I GATC 4 cut(s) 9, 81, 170, 207
LmnI GCTCC 2 cut(s) 28, 380
LpnPI CCDG 4 cut(s) 39, 167, 345, 349
Lsp1109I GCAGC 2 cut(s) 163, 395
LweI GCATC 1 cut(s) 234
MaeI CTAG 1 cut(s) 460
MaeII ACGT 1 cut(s) 192
MaeIII GTNAC 1 cut(s) 454
MalI GATC 4 cut(s) 11, 83, 172, 209
MboI GATC 4 cut(s) 9, 81, 170, 207
MboII GAAGA 8 cut(s) 156, 202, 269, 272, 275, 287, 314, 372
MfeI CAATTG 1 cut(s) 120
MluCI AATT 3 cut(s) 97, 120, 264
MmeI TCCRAC 1 cut(s) 358
MseI TTAA 2 cut(s) 96, 263
MslI CAYNNNNRTG 2 cut(s) 242, 429
MspA1I CMGCKG 1 cut(s) 176
MspI CCGG 1 cut(s) 336
MunI CAATTG 1 cut(s) 120
MwoI GCNNNNNNNGC 2 cut(s) 68, 182
NcoI CCATGG 1 cut(s) 430
NdeII GATC 4 cut(s) 9, 81, 170, 207
NlaIII CATG 3 cut(s) 208, 259, 434
PfeI GAWTC 1 cut(s) 48
PkrI GCNGC 3 cut(s) 178, 385, 443
PvuII CAGCTG 1 cut(s) 176
RsaI GTAC 1 cut(s) 330
RsaNI GTAC 1 cut(s) 329
RseI CAYNNNNRTG 2 cut(s) 242, 429
SaqAI TTAA 2 cut(s) 96, 263
SatI GCNGC 3 cut(s) 177, 384, 442
Sau3AI GATC 4 cut(s) 9, 81, 170, 207
SetI ASST 6 cut(s) 152, 178, 195, 218, 334, 461
SfaNI GCATC 1 cut(s) 234
SmiMI CAYNNNNRTG 2 cut(s) 242, 429
Sse9I AATT 3 cut(s) 97, 120, 264
SsiI CCGC 1 cut(s) 441
SspMI CTAG 1 cut(s) 460
StyI CCWWGG 1 cut(s) 430
TaaI ACNGT 1 cut(s) 452
TaiI ACGT 1 cut(s) 195
TaqI TCGA 1 cut(s) 358
TasI AATT 3 cut(s) 97, 120, 264
TauI GCSGC 1 cut(s) 444
TfiI GAWTC 1 cut(s) 48
Tru1I TTAA 2 cut(s) 96, 263
Tru9I TTAA 2 cut(s) 96, 263
TscAI CASTG 1 cut(s) 64
TseI GCWGC 2 cut(s) 176, 383
TspDTI ATGAA 5 cut(s) 17, 142, 226, 272, 308
TspRI CASTG 1 cut(s) 64
XcmI CCANNNNNNNNNTGG 1 cut(s) 362
XspI CTAG 1 cut(s) 460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.