RchiOBHm_Chr5g0015851

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0021419
Physical Location & Seq
Reverse (-)
10960718 .. 10960903
186 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29627

Sequence Viewer

Length: 186 bp
ATGGGGTCATTGTGCGTAATGGAGCTCCAGCACGTGGCATTCATCATGGTGTTCTCTGCCAGTGGCCTCGTCCCGCTGCTTGATTTGATCTTCCCTGCTTTCGCCTCTGCCTATCTCTTAGTACTGTCGTGCTTGGCCTTCCGATCACATGGCCTTGTCTCTTCTGGCTCGCAAGAGATTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

61

Amino Acids

6.54

Weight (kDa)

5.27

Isoelectric Point (pI)

50.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7733 PF24867 7 - 60 1.4e-12 Domain of unknown function (DUF7733)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0021419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0015761 RchiOBHm_Chr5g0015841 RchiOBHm_Chr5g0015851
rosa_samantha Rh5CG132500
rosa_wichuraiana Rw5G010620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 34
AciI CCGC 1 cut(s) 74
AcvI CACGTG 1 cut(s) 34
AfaI GTAC 1 cut(s) 123
AfiI CCNNNNNNNGG 1 cut(s) 34
AluBI AGCT 1 cut(s) 25
AluI AGCT 1 cut(s) 25
Alw21I GWGCWC 1 cut(s) 27
Alw26I GTCTC 1 cut(s) 163
AoxI GGCC 3 cut(s) 64, 135, 151
ApeKI GCWGC 1 cut(s) 76
BanII GRGCYC 1 cut(s) 27
BbrPI CACGTG 1 cut(s) 34
Bbv12I GWGCWC 1 cut(s) 27
BbvI GCAGC 1 cut(s) 63
BcoDI GTCTC 1 cut(s) 163
BisI GCNGC 1 cut(s) 77
BlsI GCNGC 1 cut(s) 78
BmcAI AGTACT 1 cut(s) 123
BpmI CTGGAG 1 cut(s) 11
BsaAI YACGTR 1 cut(s) 34
Bsc4I CCNNNNNNNGG 1 cut(s) 34
Bse1I ACTGG 1 cut(s) 60
BseLI CCNNNNNNNGG 1 cut(s) 34
BseNI ACTGG 1 cut(s) 60
BseXI GCAGC 1 cut(s) 63
BshFI GGCC 3 cut(s) 66, 137, 153
BsiHKAI GWGCWC 1 cut(s) 27
BslFI GGGAC 1 cut(s) 56
BslI CCNNNNNNNGG 1 cut(s) 34
BsmAI GTCTC 1 cut(s) 163
BsmFI GGGAC 1 cut(s) 56
BsmI GAATGC 1 cut(s) 38
BsnI GGCC 3 cut(s) 66, 137, 153
Bsp1286I GDGCHC 1 cut(s) 27
Bsp143I GATC 2 cut(s) 87, 143
BspACI CCGC 1 cut(s) 74
BspANI GGCC 3 cut(s) 66, 137, 153
BsrI ACTGG 1 cut(s) 60
BssMI GATC 2 cut(s) 87, 143
Bst4CI ACNGT 1 cut(s) 126
Bst6I CTCTTC 1 cut(s) 166
BstBAI YACGTR 1 cut(s) 34
BstC8I GCNNGC 1 cut(s) 170
BstDEI CTNAG 1 cut(s) 118
BstKTI GATC 2 cut(s) 90, 146
BstMAI GTCTC 1 cut(s) 163
BstMBI GATC 2 cut(s) 87, 143
BstV1I GCAGC 1 cut(s) 63
BsuRI GGCC 3 cut(s) 66, 137, 153
BtsIMutI CAGTG 1 cut(s) 67
Cac8I GCNNGC 1 cut(s) 170
Csp6I GTAC 1 cut(s) 122
CviAII CATG 2 cut(s) 46, 149
CviJI RGCY 5 cut(s) 25, 66, 137, 153, 168
CviKI_1 RGCY 5 cut(s) 25, 66, 137, 153, 168
CviQI GTAC 1 cut(s) 122
DdeI CTNAG 1 cut(s) 118
DpnI GATC 2 cut(s) 89, 145
DpnII GATC 2 cut(s) 87, 143
Eam1104I CTCTTC 1 cut(s) 166
EarI CTCTTC 1 cut(s) 166
Ecl136II GAGCTC 1 cut(s) 25
Eco24I GRGCYC 1 cut(s) 27
Eco53kI GAGCTC 1 cut(s) 25
Eco72I CACGTG 1 cut(s) 34
EcoICRI GAGCTC 1 cut(s) 25
EcoT38I GRGCYC 1 cut(s) 27
FaeI CATG 2 cut(s) 49, 152
FaiI YATR 2 cut(s) 47, 150
FaqI GGGAC 1 cut(s) 56
FatI CATG 2 cut(s) 45, 148
FauI CCCGC 1 cut(s) 81
Fnu4HI GCNGC 1 cut(s) 77
FriOI GRGCYC 1 cut(s) 27
Fsp4HI GCNGC 1 cut(s) 77
GluI GCNGC 1 cut(s) 77
GsuI CTGGAG 1 cut(s) 11
HaeIII GGCC 3 cut(s) 66, 137, 153
Hin1II CATG 2 cut(s) 49, 152
Hpy188I TCNGA 1 cut(s) 143
HpyAV CCTTC 1 cut(s) 148
HpyCH4III ACNGT 1 cut(s) 126
HpyCH4IV ACGT 1 cut(s) 33
HpyF3I CTNAG 1 cut(s) 118
HpySE526I ACGT 1 cut(s) 33
Hsp92II CATG 2 cut(s) 49, 152
Kzo9I GATC 2 cut(s) 87, 143
LmnI GCTCC 2 cut(s) 22, 30
LpnPI CCDG 4 cut(s) 41, 73, 108, 150
Lsp1109I GCAGC 1 cut(s) 63
MaeII ACGT 1 cut(s) 33
MalI GATC 2 cut(s) 89, 145
MboI GATC 2 cut(s) 87, 143
MboII GAAGA 2 cut(s) 82, 153
MhlI GDGCHC 1 cut(s) 27
MnlI CCTC 2 cut(s) 77, 115
MslI CAYNNNNRTG 1 cut(s) 47
MspA1I CMGCKG 1 cut(s) 76
Mva1269I GAATGC 1 cut(s) 38
NdeII GATC 2 cut(s) 87, 143
NlaIII CATG 2 cut(s) 49, 152
PctI GAATGC 1 cut(s) 38
PflMI CCANNNNNTGG 1 cut(s) 34
PkrI GCNGC 1 cut(s) 78
PmaCI CACGTG 1 cut(s) 34
PmlI CACGTG 1 cut(s) 34
Ppu21I YACGTR 1 cut(s) 34
Psp124BI GAGCTC 1 cut(s) 27
PspCI CACGTG 1 cut(s) 34
RsaI GTAC 1 cut(s) 123
RsaNI GTAC 1 cut(s) 122
RseI CAYNNNNRTG 1 cut(s) 47
SacI GAGCTC 1 cut(s) 27
SatI GCNGC 1 cut(s) 77
Sau3AI GATC 2 cut(s) 87, 143
ScaI AGTACT 1 cut(s) 123
SduI GDGCHC 1 cut(s) 27
SetI ASST 2 cut(s) 27, 36
SmiMI CAYNNNNRTG 1 cut(s) 47
SsiI CCGC 1 cut(s) 74
SstI GAGCTC 1 cut(s) 27
TaaI ACNGT 1 cut(s) 126
TaiI ACGT 1 cut(s) 36
TatI WGTACW 1 cut(s) 121
TscAI CASTG 1 cut(s) 67
TseI GCWGC 1 cut(s) 76
TspDTI ATGAA 1 cut(s) 31
TspRI CASTG 1 cut(s) 67
Van91I CCANNNNNTGG 1 cut(s) 34
ZrmI AGTACT 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.