RchiOBHm_Chr5g0039551

Sucrose transport protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
34229113 .. 34234578
5466 bp
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UTR
Exon/CDS
Intron
PRQ31812

Sequence Viewer

Length: 237 bp
ATGGGAGGTTCCAGTTCAATCTTCTTGCAAGGGAAGGAGAGGGCTGGAAATTCTGAGACATGTCTAAAGCTAGGAAGTGACATTATTTTGACTGAAAAGGTTCAACCCTGCGGTGGTATTTGGAGTGACAACTGCTCTTTGAAAATGGGAAGAAGACACCTCTTCATACTTGCAGGATCTCTCATTGTCTCTGTTGCCATAAGTCAATCGTTGCAATTTATTTTCATTTTATTTTGA

Protein Analysis

78

Amino Acids

8.42

Weight (kDa)

8.61

Isoelectric Point (pI)

54.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020562)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0039551
rosa_roxburghii Rroxscaffold_1G00055360 Rroxscaffold_4G00314050
rosa_samantha Rh6DG221700
rosa_wichuraiana Rw2G046150 Rw3G016030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 111
AclWI GGATC 1 cut(s) 184
AcsI RAATTY 1 cut(s) 49
AfiI CCNNNNNNNGG 1 cut(s) 113
AflIII ACRYGT 1 cut(s) 59
AgsI TTSAA 3 cut(s) 18, 104, 142
AluBI AGCT 1 cut(s) 70
AluI AGCT 1 cut(s) 70
Alw26I GTCTC 2 cut(s) 50, 193
AlwI GGATC 1 cut(s) 184
ApoI RAATTY 1 cut(s) 49
Asp700I GAANNNNTTC 1 cut(s) 99
BbsI GAAGAC 1 cut(s) 160
BcoDI GTCTC 2 cut(s) 50, 193
BfaI CTAG 1 cut(s) 71
BmiI GGNNCC 1 cut(s) 10
BpiI GAAGAC 1 cut(s) 160
Bsc4I CCNNNNNNNGG 1 cut(s) 113
Bse1I ACTGG 1 cut(s) 12
BseLI CCNNNNNNNGG 1 cut(s) 113
BseMII CTCAG 1 cut(s) 45
BseNI ACTGG 1 cut(s) 12
BslI CCNNNNNNNGG 1 cut(s) 113
BsmAI GTCTC 2 cut(s) 50, 193
Bsp143I GATC 1 cut(s) 176
BspACI CCGC 1 cut(s) 111
BspCNI CTCAG 1 cut(s) 46
BspLI GGNNCC 1 cut(s) 10
BspPI GGATC 1 cut(s) 184
BsrI ACTGG 1 cut(s) 12
BssMI GATC 1 cut(s) 176
Bst6I CTCTTC 1 cut(s) 167
BstDEI CTNAG 1 cut(s) 54
BstKTI GATC 1 cut(s) 179
BstMAI GTCTC 2 cut(s) 50, 193
BstMBI GATC 1 cut(s) 176
BstNSI RCATGY 1 cut(s) 63
BstV2I GAAGAC 1 cut(s) 160
BstX2I RGATCY 1 cut(s) 176
BstYI RGATCY 1 cut(s) 176
CviAII CATG 1 cut(s) 60
CviJI RGCY 2 cut(s) 44, 70
CviKI_1 RGCY 2 cut(s) 44, 70
DdeI CTNAG 1 cut(s) 54
DpnI GATC 1 cut(s) 178
DpnII GATC 1 cut(s) 176
Eam1104I CTCTTC 1 cut(s) 167
EarI CTCTTC 1 cut(s) 167
FaeI CATG 1 cut(s) 63
FaiI YATR 3 cut(s) 61, 167, 200
FatI CATG 1 cut(s) 59
FspBI CTAG 1 cut(s) 71
Hin1II CATG 1 cut(s) 63
Hpy188I TCNGA 1 cut(s) 55
HpyAV CCTTC 1 cut(s) 28
HpyCH4V TGCA 3 cut(s) 28, 173, 214
HpyF3I CTNAG 1 cut(s) 54
Hsp92II CATG 1 cut(s) 63
Kzo9I GATC 1 cut(s) 176
LpnPI CCDG 4 cut(s) 25, 30, 121, 159
MaeI CTAG 1 cut(s) 71
MaeIII GTNAC 2 cut(s) 77, 125
MalI GATC 1 cut(s) 178
MboI GATC 1 cut(s) 176
MboII GAAGA 4 cut(s) 13, 154, 162, 165
MflI RGATCY 1 cut(s) 176
MluCI AATT 2 cut(s) 49, 215
MnlI CCTC 2 cut(s) 33, 170
MroXI GAANNNNTTC 1 cut(s) 99
NdeII GATC 1 cut(s) 176
NlaIII CATG 1 cut(s) 63
NlaIV GGNNCC 1 cut(s) 10
NmuCI GTSAC 2 cut(s) 77, 125
NspI RCATGY 1 cut(s) 63
PciI ACATGT 1 cut(s) 59
PdmI GAANNNNTTC 1 cut(s) 99
PscI ACATGT 1 cut(s) 59
PspN4I GGNNCC 1 cut(s) 10
PsuI RGATCY 1 cut(s) 176
Sau3AI GATC 1 cut(s) 176
SetI ASST 4 cut(s) 10, 72, 102, 162
SgeI CNNG 9 cut(s) 24, 37, 41, 57, 72, 83, 120, 182, 186
Sse9I AATT 2 cut(s) 49, 215
SsiI CCGC 1 cut(s) 111
SspMI CTAG 1 cut(s) 71
TasI AATT 2 cut(s) 49, 215
TseFI GTSAC 2 cut(s) 77, 125
Tsp45I GTSAC 2 cut(s) 77, 125
TspDTI ATGAA 2 cut(s) 154, 214
XapI RAATTY 1 cut(s) 49
XceI RCATGY 1 cut(s) 63
XmnI GAANNNNTTC 1 cut(s) 99
XspI CTAG 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.