Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0020562

Physical Location & Seq

Genomic Coordinates Reverse (-)

39496582 .. 39497717

Gene Structure 1136 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG221700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGTTTGCTGTAGTCTCTTCCTACTTTCATTTTTCCTGCAGCTTTGTTGTTTTTGGGAATTGCAGGGATCAGCTGTGTATAAGTTCAAGGCCTATTGGCAATGACGTAATTAGCATTTATTTGGGAACAATCTTCTTGCAAGGAAAGGAGAGGGCTGGAAATCCTGAGACATTGAGTCTAAAGCTAGGAAGTGACATTATTTTAACTGAAAAGGTTCAACCCTGCGGTGGTATTTGGAGTGACAACTGCTCTTTGAAAATGGGAAGAAGACGCCCCTTCATACTTGCAGGATCTCTCATTATCTCTGTTGCCATGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006950 GO:0008150 GO:0008515 GO:0008643 GO:0009611 GO:0012505 GO:0015144 GO:0015154 GO:0015157 GO:0015766 GO:0015770 GO:0015772 GO:0022857 GO:0034219 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0090406 GO:0120025

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1 MFS_2

Protein Analysis

106

Amino Acids

11.59

Weight (kDa)

8.72

Isoelectric Point (pI)

44.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0020562)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0039551
rosa_roxburghii	Rroxscaffold_1G00055360 Rroxscaffold_4G00314050
rosa_samantha	Rh6DG221700
rosa_wichuraiana	Rw2G046150 Rw3G016030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	225
AclWI	GGATC	2 cut(s)	75, 298
AcyI	GRCGYC	1 cut(s)	271
AfiI	CCNNNNNNNGG	1 cut(s)	227
AgsI	TTSAA	3 cut(s)	87, 218, 256
AhdI	GACNNNNNGTC	1 cut(s)	174
AluBI	AGCT	3 cut(s)	42, 73, 184
AluI	AGCT	3 cut(s)	42, 73, 184
Alw26I	GTCTC	2 cut(s)	19, 161
AlwI	GGATC	2 cut(s)	75, 298
AoxI	GGCC	1 cut(s)	89
ApeKI	GCWGC	1 cut(s)	39
Asp700I	GAANNNNTTC	1 cut(s)	213
BbsI	GAAGAC	1 cut(s)	274
BbvI	GCAGC	1 cut(s)	51
BcoDI	GTCTC	2 cut(s)	19, 161
BfaI	CTAG	1 cut(s)	185
BfmI	CTRYAG	2 cut(s)	9, 37
BisI	GCNGC	1 cut(s)	40
BlsI	GCNGC	1 cut(s)	41
BmeRI	GACNNNNNGTC	1 cut(s)	174
BpiI	GAAGAC	1 cut(s)	274
BsaHI	GRCGYC	1 cut(s)	271
Bsc4I	CCNNNNNNNGG	1 cut(s)	227
Bse3DI	GCAATG	1 cut(s)	106
BseLI	CCNNNNNNNGG	1 cut(s)	227
BseMI	GCAATG	1 cut(s)	106
BseMII	CTCAG	1 cut(s)	156
BseXI	GCAGC	1 cut(s)	51
BshFI	GGCC	1 cut(s)	91
BslI	CCNNNNNNNGG	1 cut(s)	227
BsmAI	GTCTC	2 cut(s)	19, 161
BsnI	GGCC	1 cut(s)	91
Bsp143I	GATC	2 cut(s)	67, 290
BspACI	CCGC	1 cut(s)	225
BspANI	GGCC	1 cut(s)	91
BspCNI	CTCAG	1 cut(s)	157
BspMAI	CTGCAG	1 cut(s)	41
BspPI	GGATC	2 cut(s)	75, 298
BsrDI	GCAATG	1 cut(s)	106
BssMI	GATC	2 cut(s)	67, 290
BssNI	GRCGYC	1 cut(s)	271
Bst6I	CTCTTC	1 cut(s)	22
BstACI	GRCGYC	1 cut(s)	271
BstDEI	CTNAG	1 cut(s)	165
BstKTI	GATC	2 cut(s)	70, 293
BstMAI	GTCTC	2 cut(s)	19, 161
BstMBI	GATC	2 cut(s)	67, 290
BstSFI	CTRYAG	2 cut(s)	9, 37
BstV1I	GCAGC	1 cut(s)	51
BstV2I	GAAGAC	1 cut(s)	274
BstX2I	RGATCY	1 cut(s)	290
BstYI	RGATCY	1 cut(s)	290
BsuRI	GGCC	1 cut(s)	91
CseI	GACGC	1 cut(s)	279
CviAII	CATG	1 cut(s)	313
CviJI	RGCY	5 cut(s)	42, 73, 91, 155, 184
CviKI_1	RGCY	5 cut(s)	42, 73, 91, 155, 184
DdeI	CTNAG	1 cut(s)	165
DpnI	GATC	2 cut(s)	69, 292
DpnII	GATC	2 cut(s)	67, 290
DriI	GACNNNNNGTC	1 cut(s)	174
Eam1104I	CTCTTC	1 cut(s)	22
Eam1105I	GACNNNNNGTC	1 cut(s)	174
EarI	CTCTTC	1 cut(s)	22
Eco147I	AGGCCT	1 cut(s)	91
FaeI	CATG	1 cut(s)	316
FaiI	YATR	4 cut(s)	80, 281, 314, 319
FatI	CATG	1 cut(s)	312
Fnu4HI	GCNGC	1 cut(s)	40
Fsp4HI	GCNGC	1 cut(s)	40
FspBI	CTAG	1 cut(s)	185
GluI	GCNGC	1 cut(s)	40
HaeIII	GGCC	1 cut(s)	91
HgaI	GACGC	1 cut(s)	279
Hin1I	GRCGYC	1 cut(s)	271
Hin1II	CATG	1 cut(s)	316
HinfI	GANTC	1 cut(s)	175
Hpy188III	TCNNGA	1 cut(s)	164
HpyAV	CCTTC	1 cut(s)	286
HpyCH4IV	ACGT	1 cut(s)	105
HpyCH4V	TGCA	4 cut(s)	39, 63, 139, 287
HpyF3I	CTNAG	1 cut(s)	165
HpySE526I	ACGT	1 cut(s)	105
Hsp92I	GRCGYC	1 cut(s)	271
Hsp92II	CATG	1 cut(s)	316
Kzo9I	GATC	2 cut(s)	67, 290
LpnPI	CCDG	6 cut(s)	49, 49, 141, 177, 235, 273
Lsp1109I	GCAGC	1 cut(s)	51
MaeI	CTAG	1 cut(s)	185
MaeII	ACGT	1 cut(s)	105
MaeIII	GTNAC	2 cut(s)	191, 239
MalI	GATC	2 cut(s)	69, 292
MboI	GATC	2 cut(s)	67, 290
MboII	GAAGA	4 cut(s)	9, 124, 276, 279
MflI	RGATCY	1 cut(s)	290
MluCI	AATT	2 cut(s)	58, 108
MlyI	GAGTC	1 cut(s)	184
MnlI	CCTC	1 cut(s)	144
MroXI	GAANNNNTTC	1 cut(s)	213
MseI	TTAA	1 cut(s)	203
MspA1I	CMGCKG	1 cut(s)	73
NdeII	GATC	2 cut(s)	67, 290
NlaIII	CATG	1 cut(s)	316
NmuCI	GTSAC	2 cut(s)	191, 239
PceI	AGGCCT	1 cut(s)	91
PdmI	GAANNNNTTC	1 cut(s)	213
PkrI	GCNGC	1 cut(s)	41
PleI	GAGTC	1 cut(s)	183
PpsI	GAGTC	1 cut(s)	183
PstI	CTGCAG	1 cut(s)	41
PsuI	RGATCY	1 cut(s)	290
PvuII	CAGCTG	1 cut(s)	73
SaqAI	TTAA	1 cut(s)	203
SatI	GCNGC	1 cut(s)	40
Sau3AI	GATC	2 cut(s)	67, 290
SchI	GAGTC	1 cut(s)	184
SetI	ASST	5 cut(s)	44, 75, 108, 186, 216
SfcI	CTRYAG	2 cut(s)	9, 37
Sse9I	AATT	2 cut(s)	58, 108
SseBI	AGGCCT	1 cut(s)	91
SsiI	CCGC	1 cut(s)	225
SspMI	CTAG	1 cut(s)	185
StuI	AGGCCT	1 cut(s)	91
TaiI	ACGT	1 cut(s)	108
TasI	AATT	2 cut(s)	58, 108
Tru1I	TTAA	1 cut(s)	203
Tru9I	TTAA	1 cut(s)	203
TseFI	GTSAC	2 cut(s)	191, 239
TseI	GCWGC	1 cut(s)	39
Tsp45I	GTSAC	2 cut(s)	191, 239
TspDTI	ATGAA	2 cut(s)	17, 268
XmnI	GAANNNNTTC	1 cut(s)	213
XspI	CTAG	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.