Rroxscaffold_4G00314050

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
37868057 .. 37868863
807 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00314050.1

Sequence Viewer

Length: 336 bp
ATGTTTGCTGTAGTCTCTTCCTACTTTCATTTTTCCTGCAGCTTTGTTGTTTTTGGGAATTGCAGGGATCAGCTGTGTATAAGTTCAAGGCCTATTGGCAATGACGTAATTAGCATTTATTTGGGAACAATCTTCTTGCAAGGAAAGGAGAGGGCTGGAAATCCCGAGACATTGAGTCTAAAGCTAGGAAGTGACATTATTTTAACTGAAAAGGTTCAACTTAATTCAGGTTGCAACTTCACTTCATTCTGGATGAAAATGGGAAGAAGACGCCCCTTCATACTTGCAGGATCTCTCATTATCTCTGTTGCCATAAGTCAATCATTGCAATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.32

Weight (kDa)

9.13

Isoelectric Point (pI)

47.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020562)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0039551
rosa_roxburghii Rroxscaffold_1G00055360 Rroxscaffold_4G00314050
rosa_samantha Rh6DG221700
rosa_wichuraiana Rw2G046150 Rw3G016030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 75, 298
AcyI GRCGYC 1 cut(s) 271
AgsI TTSAA 2 cut(s) 87, 218
AhdI GACNNNNNGTC 1 cut(s) 174
AluBI AGCT 3 cut(s) 42, 73, 184
AluI AGCT 3 cut(s) 42, 73, 184
Alw26I GTCTC 2 cut(s) 19, 161
AlwI GGATC 2 cut(s) 75, 298
Ama87I CYCGRG 1 cut(s) 164
AoxI GGCC 1 cut(s) 89
ApeKI GCWGC 1 cut(s) 39
Asp700I GAANNNNTTC 1 cut(s) 213
AvaI CYCGRG 1 cut(s) 164
BbsI GAAGAC 1 cut(s) 274
BbvI GCAGC 1 cut(s) 51
BcoDI GTCTC 2 cut(s) 19, 161
BfaI CTAG 2 cut(s) 185, 334
BfmI CTRYAG 2 cut(s) 9, 37
BisI GCNGC 1 cut(s) 40
BlsI GCNGC 1 cut(s) 41
BmeRI GACNNNNNGTC 1 cut(s) 174
BmeT110I CYCGRG 1 cut(s) 164
BpiI GAAGAC 1 cut(s) 274
BsaHI GRCGYC 1 cut(s) 271
Bse3DI GCAATG 2 cut(s) 106, 323
BseGI GGATG 1 cut(s) 258
BseMI GCAATG 2 cut(s) 106, 323
BseXI GCAGC 1 cut(s) 51
BshFI GGCC 1 cut(s) 91
BsiHKCI CYCGRG 1 cut(s) 164
BsmAI GTCTC 2 cut(s) 19, 161
BsnI GGCC 1 cut(s) 91
BsoBI CYCGRG 1 cut(s) 164
Bsp143I GATC 2 cut(s) 67, 290
BspANI GGCC 1 cut(s) 91
BspMAI CTGCAG 1 cut(s) 41
BspPI GGATC 2 cut(s) 75, 298
BsrDI GCAATG 2 cut(s) 106, 323
BssMI GATC 2 cut(s) 67, 290
BssNI GRCGYC 1 cut(s) 271
Bst6I CTCTTC 1 cut(s) 22
BstACI GRCGYC 1 cut(s) 271
BstF5I GGATG 1 cut(s) 258
BstKTI GATC 2 cut(s) 70, 293
BstMAI GTCTC 2 cut(s) 19, 161
BstMBI GATC 2 cut(s) 67, 290
BstSFI CTRYAG 2 cut(s) 9, 37
BstV1I GCAGC 1 cut(s) 51
BstV2I GAAGAC 1 cut(s) 274
BstX2I RGATCY 1 cut(s) 290
BstYI RGATCY 1 cut(s) 290
BsuRI GGCC 1 cut(s) 91
BtsCI GGATG 1 cut(s) 258
CseI GACGC 1 cut(s) 279
CviJI RGCY 5 cut(s) 42, 73, 91, 155, 184
CviKI_1 RGCY 5 cut(s) 42, 73, 91, 155, 184
DpnI GATC 2 cut(s) 69, 292
DpnII GATC 2 cut(s) 67, 290
DriI GACNNNNNGTC 1 cut(s) 174
Eam1104I CTCTTC 1 cut(s) 22
Eam1105I GACNNNNNGTC 1 cut(s) 174
EarI CTCTTC 1 cut(s) 22
Eco147I AGGCCT 1 cut(s) 91
Eco88I CYCGRG 1 cut(s) 164
FaiI YATR 3 cut(s) 80, 281, 314
Fnu4HI GCNGC 1 cut(s) 40
FokI GGATG 1 cut(s) 265
Fsp4HI GCNGC 1 cut(s) 40
FspBI CTAG 2 cut(s) 185, 334
GluI GCNGC 1 cut(s) 40
HaeIII GGCC 1 cut(s) 91
HgaI GACGC 1 cut(s) 279
Hin1I GRCGYC 1 cut(s) 271
HinfI GANTC 1 cut(s) 175
Hpy188III TCNNGA 2 cut(s) 164, 250
HpyAV CCTTC 1 cut(s) 286
HpyCH4IV ACGT 1 cut(s) 105
HpyCH4V TGCA 6 cut(s) 39, 63, 139, 234, 287, 328
HpySE526I ACGT 1 cut(s) 105
Hsp92I GRCGYC 1 cut(s) 271
Kzo9I GATC 2 cut(s) 67, 290
LpnPI CCDG 6 cut(s) 49, 49, 141, 213, 235, 273
Lsp1109I GCAGC 1 cut(s) 51
MaeI CTAG 2 cut(s) 185, 334
MaeII ACGT 1 cut(s) 105
MaeIII GTNAC 1 cut(s) 191
MalI GATC 2 cut(s) 69, 292
MboI GATC 2 cut(s) 67, 290
MboII GAAGA 4 cut(s) 9, 124, 276, 279
MflI RGATCY 1 cut(s) 290
MluCI AATT 4 cut(s) 58, 108, 223, 329
MlyI GAGTC 1 cut(s) 184
MnlI CCTC 1 cut(s) 144
MroXI GAANNNNTTC 1 cut(s) 213
MseI TTAA 2 cut(s) 203, 222
MspA1I CMGCKG 1 cut(s) 73
NdeII GATC 2 cut(s) 67, 290
NmuCI GTSAC 1 cut(s) 191
PceI AGGCCT 1 cut(s) 91
PdmI GAANNNNTTC 1 cut(s) 213
PkrI GCNGC 1 cut(s) 41
PleI GAGTC 1 cut(s) 183
PpsI GAGTC 1 cut(s) 183
PstI CTGCAG 1 cut(s) 41
PsuI RGATCY 1 cut(s) 290
PvuII CAGCTG 1 cut(s) 73
SaqAI TTAA 2 cut(s) 203, 222
SatI GCNGC 1 cut(s) 40
Sau3AI GATC 2 cut(s) 67, 290
SchI GAGTC 1 cut(s) 184
SetI ASST 6 cut(s) 44, 75, 108, 186, 216, 232
SfcI CTRYAG 2 cut(s) 9, 37
Sse9I AATT 4 cut(s) 58, 108, 223, 329
SseBI AGGCCT 1 cut(s) 91
SspMI CTAG 2 cut(s) 185, 334
StuI AGGCCT 1 cut(s) 91
TaiI ACGT 1 cut(s) 108
TasI AATT 4 cut(s) 58, 108, 223, 329
Tru1I TTAA 2 cut(s) 203, 222
Tru9I TTAA 2 cut(s) 203, 222
TseFI GTSAC 1 cut(s) 191
TseI GCWGC 1 cut(s) 39
Tsp45I GTSAC 1 cut(s) 191
TspDTI ATGAA 4 cut(s) 17, 234, 268, 269
XmnI GAANNNNTTC 1 cut(s) 213
XspI CTAG 2 cut(s) 185, 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.