Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0022772

Physical Location & Seq

Genomic Coordinates Reverse (-)

35651810 .. 35654657

Gene Structure 2848 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31949

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGAACTATAATCTGCCCGTCCTCGGTTTGCCGACTCCCCTCCGTTGCCTGACATTCAATGCTTCGGGTCAGATCACAGTTATCAATGTCGACAAAGAAGGAGATCCTATTGTGAGAGTATTGAGAGAGGCCGATGCCGATCCCGATCCCTCAAAAGGCGTGGTGGCCGCCTCCTTGGACAGTAAAAGGCACAAATTAGCTGTAGCTAGAAAGGATGGCACGGTTGATCTTCTTAATCCTCATACTGGCGACGTATATTGCCACAACATTCTAGTTTCTGATATTCAGCGCGGGGAGGGTGATATTGTTGGATTACATATCAGGGCCAATTATTCAACTAAGAGATCTTGCAATATTCTCACATGTACAACTAAGGGTCGGGTACATATATTATCCTTAAATCAGGATGGATCACATAAGAAGCGAAATGAATGGAATGTGAATTCTCAAGGTCGTACCCATTTTTGCCAAATGGATGCAACCGAAGATTATTTTGTTTTTGGAGGGTCGCCTGATGCACTGTCTGTATGGAAGGTTGAAGAGTGCATCTGGAAACTAGAAGATCCTAAAAATAAATGTGTTAGAGAAACATTTTTCACATGTGCAACATTCATGGAAGATAATGAAGAGACACTTGTTGCAGGCAACAATATGCATGAGGTTGTTGTCTATGATACTAAATGTTGGATGGGAAATCCCGAATTAAAAGTCACATTCTGGGAGGAGGAGAATCTTGAATACTGGGTCCCTATTACAGCTATTGCAAATGATTTAAGTGGCACAAAAGTCTACATAGGGAATGATTCTGGTGACCTTGCTTCGGTTGATATTAGTTCAGGGAGAGTGATCAAATGCTTTGAGAATTTGAAAAGATGGCCTCATAAGGACTCTCAAACCAGAAAAGTATCTAAATCTCCCATCCAAAATAACTCAATTAAATTCATTGCAAGGGACACGCAACATCCTCTAATATCATCAAGCTTGGATAGCCATCTACGCTTTTGGAATGAAGATAGTGGGAAGCTACTCTCCACGGTTTATCCTATGCAAGATCTCACAACTGTAATTTTTGATTCCTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0022613 GO:0030684 GO:0030687 GO:0031974 GO:0031981 GO:0032991 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

360

Amino Acids

40.48

Weight (kDa)

5.79

Isoelectric Point (pI)

46.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022772)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0041021
rosa_laevigata	RLG00000031017
rosa_samantha	Rh5AG274800 Rh7BG377100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	90, 789
AccII	CGCG	1 cut(s)	291
AciI	CCGC	2 cut(s)	168, 291
AclWI	GGATC	5 cut(s)	98, 134, 140, 418, 557
AcoI	YGGCCR	1 cut(s)	165
AcsI	RAATTY	3 cut(s)	442, 862, 938
AfaI	GTAC	3 cut(s)	367, 384, 457
AfiI	CCNNNNNNNGG	4 cut(s)	23, 155, 245, 820
AflIII	ACRYGT	2 cut(s)	362, 599
AgsI	TTSAA	5 cut(s)	58, 336, 539, 737, 868
AluBI	AGCT	5 cut(s)	200, 206, 758, 981, 1024
AluI	AGCT	5 cut(s)	200, 206, 758, 981, 1024
Alw26I	GTCTC	1 cut(s)	623
AlwI	GGATC	5 cut(s)	98, 134, 140, 418, 557
AoxI	GGCC	4 cut(s)	129, 165, 324, 875
ApoI	RAATTY	3 cut(s)	442, 862, 938
ArsI	GACNNNNNNTTYG	2 cut(s)	693, 725
AspLEI	GCGC	1 cut(s)	291
AspS9I	GGNCC	2 cut(s)	324, 745
AsuHPI	GGTGA	2 cut(s)	311, 821
AvaII	GGWCC	1 cut(s)	745
BccI	CCATC	6 cut(s)	209, 401, 682, 867, 926, 999
BclI	TGATCA	1 cut(s)	846
BcoDI	GTCTC	1 cut(s)	623
BfaI	CTAG	3 cut(s)	207, 272, 557
BfmI	CTRYAG	1 cut(s)	201
BglII	AGATCT	2 cut(s)	344, 1051
BisI	GCNGC	1 cut(s)	168
BlsI	GCNGC	1 cut(s)	169
Bme18I	GGWCC	1 cut(s)	745
BmgT120I	GGNCC	2 cut(s)	324, 745
BmiI	GGNNCC	2 cut(s)	746, 747
BmrI	ACTGGG	1 cut(s)	751
BmsI	GCATC	4 cut(s)	124, 466, 505, 555
BmuI	ACTGGG	1 cut(s)	751
BpuEI	CTTGAG	1 cut(s)	432
BsaBI	GATNNNNATC	3 cut(s)	138, 144, 990
BsaJI	CCNNGG	3 cut(s)	22, 174, 1032
Bsc4I	CCNNNNNNNGG	4 cut(s)	23, 155, 245, 820
Bse1I	ACTGG	2 cut(s)	250, 746
Bse3DI	GCAATG	1 cut(s)	942
Bse8I	GATNNNNATC	3 cut(s)	138, 144, 990
BseDI	CCNNGG	3 cut(s)	22, 174, 1032
BseGI	GGATG	6 cut(s)	220, 412, 481, 693, 918, 961
BseJI	GATNNNNATC	3 cut(s)	138, 144, 990
BseLI	CCNNNNNNNGG	4 cut(s)	23, 155, 245, 820
BseMI	GCAATG	1 cut(s)	942
BseNI	ACTGG	2 cut(s)	250, 746
BseRI	GAGGAG	2 cut(s)	737, 740
Bsh1236I	CGCG	1 cut(s)	291
BshFI	GGCC	4 cut(s)	131, 167, 326, 877
BslFI	GGGAC	2 cut(s)	731, 965
BslI	CCNNNNNNNGG	4 cut(s)	23, 155, 245, 820
BsmAI	GTCTC	1 cut(s)	623
BsmFI	GGGAC	2 cut(s)	731, 965
BsnI	GGCC	4 cut(s)	131, 167, 326, 877
Bsp1407I	TGTACA	1 cut(s)	365
BspACI	CCGC	2 cut(s)	168, 291
BspANI	GGCC	4 cut(s)	131, 167, 326, 877
BspFNI	CGCG	1 cut(s)	291
BspLI	GGNNCC	2 cut(s)	746, 747
BspPI	GGATC	5 cut(s)	98, 134, 140, 418, 557
BsrDI	GCAATG	1 cut(s)	942
BsrGI	TGTACA	1 cut(s)	365
BsrI	ACTGG	2 cut(s)	250, 746
BssECI	CCNNGG	3 cut(s)	22, 174, 1032
BssT1I	CCWWGG	1 cut(s)	174
Bst4CI	ACNGT	6 cut(s)	79, 182, 223, 522, 1036, 1063
Bst6I	CTCTTC	2 cut(s)	534, 621
BstAUI	TGTACA	1 cut(s)	365
BstC8I	GCNNGC	1 cut(s)	643
BstDEI	CTNAG	2 cut(s)	339, 372
BstDSI	CCRYGG	1 cut(s)	1032
BstEII	GGTNACC	1 cut(s)	809
BstF5I	GGATG	6 cut(s)	220, 412, 481, 693, 918, 961
BstFNI	CGCG	1 cut(s)	291
BstHHI	GCGC	1 cut(s)	291
BstMAI	GTCTC	1 cut(s)	623
BstMWI	GCNNNNNNNGC	2 cut(s)	987, 996
BstNSI	RCATGY	2 cut(s)	366, 603
BstPI	GGTNACC	1 cut(s)	809
BstSFI	CTRYAG	1 cut(s)	201
BstUI	CGCG	1 cut(s)	291
BstX2I	RGATCY	4 cut(s)	103, 344, 562, 1051
BstYI	RGATCY	4 cut(s)	103, 344, 562, 1051
BsuRI	GGCC	4 cut(s)	131, 167, 326, 877
BtgI	CCRYGG	1 cut(s)	1032
BtsCI	GGATG	6 cut(s)	220, 412, 481, 693, 918, 961
BtsIMutI	CAGTG	1 cut(s)	518
Cac8I	GCNNGC	1 cut(s)	643
CfoI	GCGC	1 cut(s)	291
Cfr13I	GGNCC	2 cut(s)	324, 745
Csp6I	GTAC	3 cut(s)	366, 383, 456
CspCI	CAANNNNNGTGG	2 cut(s)	141, 176
CviAII	CATG	4 cut(s)	363, 600, 613, 656
CviQI	GTAC	3 cut(s)	366, 383, 456
DdeI	CTNAG	2 cut(s)	339, 372
EaeI	YGGCCR	1 cut(s)	165
Eam1104I	CTCTTC	2 cut(s)	534, 621
EarI	CTCTTC	2 cut(s)	534, 621
Eco130I	CCWWGG	1 cut(s)	174
Eco47I	GGWCC	1 cut(s)	745
Eco91I	GGTNACC	1 cut(s)	809
EcoO109I	RGGNCCY	1 cut(s)	745
EcoO65I	GGTNACC	1 cut(s)	809
EcoRI	GAATTC	1 cut(s)	442
EcoT14I	CCWWGG	1 cut(s)	174
EcoT22I	ATGCAT	1 cut(s)	657
ErhI	CCWWGG	1 cut(s)	174
FaeI	CATG	4 cut(s)	366, 603, 616, 659
FalI	AAGNNNNNCTT	2 cut(s)	618, 650
FaqI	GGGAC	2 cut(s)	731, 965
FatI	CATG	4 cut(s)	362, 599, 612, 655
FauI	CCCGC	1 cut(s)	284
FbaI	TGATCA	1 cut(s)	846
FblI	GTMKAC	2 cut(s)	90, 789
Fnu4HI	GCNGC	1 cut(s)	168
FokI	GGATG	6 cut(s)	227, 419, 488, 700, 905, 948
Fsp4HI	GCNGC	1 cut(s)	168
FspBI	CTAG	3 cut(s)	207, 272, 557
GlaI	GCGC	1 cut(s)	290
GluI	GCNGC	1 cut(s)	168
HaeIII	GGCC	4 cut(s)	131, 167, 326, 877
HhaI	GCGC	1 cut(s)	291
Hin1II	CATG	4 cut(s)	366, 603, 616, 659
Hin6I	GCGC	1 cut(s)	289
HinP1I	GCGC	1 cut(s)	289
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HindIII	AAGCTT	1 cut(s)	979
HinfI	GANTC	5 cut(s)	34, 730, 803, 887, 1073
HphI	GGTGA	2 cut(s)	311, 821
Hpy166II	GTNNAC	2 cut(s)	91, 790
Hpy188I	TCNGA	2 cut(s)	72, 280
Hpy188III	TCNNGA	5 cut(s)	143, 404, 550, 698, 734
Hpy8I	GTNNAC	2 cut(s)	91, 790
Hpy99I	CGWCG	1 cut(s)	254
HpyAV	CCTTC	2 cut(s)	92, 526
HpyCH4III	ACNGT	6 cut(s)	79, 182, 223, 522, 1036, 1063
HpyCH4IV	ACGT	1 cut(s)	252
HpyF10VI	GCNNNNNNNGC	2 cut(s)	987, 996
HpyF3I	CTNAG	2 cut(s)	339, 372
HpySE526I	ACGT	1 cut(s)	252
Hsp92II	CATG	4 cut(s)	366, 603, 616, 659
HspAI	GCGC	1 cut(s)	289
KflI	GGGWCCC	1 cut(s)	745
Ksp22I	TGATCA	1 cut(s)	846
LweI	GCATC	4 cut(s)	124, 466, 505, 555
MaeI	CTAG	3 cut(s)	207, 272, 557
MaeII	ACGT	1 cut(s)	252
MaeIII	GTNAC	2 cut(s)	709, 809
MboII	GAAGA	7 cut(s)	221, 497, 551, 572, 629, 638, 1022
MflI	RGATCY	4 cut(s)	103, 344, 562, 1051
MluCI	AATT	8 cut(s)	194, 328, 442, 701, 862, 933, 938, 1065
MlyI	GAGTC	2 cut(s)	28, 881
MmeI	TCCRAC	2 cut(s)	289, 665
Mph1103I	ATGCAT	1 cut(s)	657
MseI	TTAA	5 cut(s)	234, 398, 704, 773, 936
MvnI	CGCG	1 cut(s)	291
MwoI	GCNNNNNNNGC	2 cut(s)	987, 996
NlaIII	CATG	4 cut(s)	366, 603, 616, 659
NlaIV	GGNNCC	2 cut(s)	746, 747
NmuCI	GTSAC	2 cut(s)	709, 809
NsiI	ATGCAT	1 cut(s)	657
NspI	RCATGY	2 cut(s)	366, 603
PciI	ACATGT	2 cut(s)	362, 599
PfeI	GAWTC	3 cut(s)	730, 803, 1073
PkrI	GCNGC	1 cut(s)	169
PleI	GAGTC	2 cut(s)	28, 881
PpsI	GAGTC	2 cut(s)	28, 881
PpuMI	RGGWCCY	1 cut(s)	745
PscI	ACATGT	2 cut(s)	362, 599
Psp5II	RGGWCCY	1 cut(s)	745
PspEI	GGTNACC	1 cut(s)	809
PspN4I	GGNNCC	2 cut(s)	746, 747
PspPI	GGNCC	2 cut(s)	324, 745
PspPPI	RGGWCCY	1 cut(s)	745
PsuI	RGATCY	4 cut(s)	103, 344, 562, 1051
RsaI	GTAC	3 cut(s)	367, 384, 457
RsaNI	GTAC	3 cut(s)	366, 383, 456
SalI	GTCGAC	1 cut(s)	89
SaqAI	TTAA	5 cut(s)	234, 398, 704, 773, 936
SatI	GCNGC	1 cut(s)	168
Sau96I	GGNCC	2 cut(s)	324, 745
SchI	GAGTC	2 cut(s)	28, 881
SfaNI	GCATC	4 cut(s)	124, 466, 505, 555
SfcI	CTRYAG	1 cut(s)	201
SinI	GGWCC	1 cut(s)	745
SmlI	CTYRAG	1 cut(s)	447
SmoI	CTYRAG	1 cut(s)	447
Sse9I	AATT	8 cut(s)	194, 328, 442, 701, 862, 933, 938, 1065
SsiI	CCGC	2 cut(s)	168, 291
SspI	AATATT	1 cut(s)	355
SspMI	CTAG	3 cut(s)	207, 272, 557
StyI	CCWWGG	1 cut(s)	174
TaaI	ACNGT	6 cut(s)	79, 182, 223, 522, 1036, 1063
TaiI	ACGT	1 cut(s)	255
TaqI	TCGA	1 cut(s)	90
TasI	AATT	8 cut(s)	194, 328, 442, 701, 862, 933, 938, 1065
TatI	WGTACW	1 cut(s)	365
TauI	GCSGC	1 cut(s)	170
TfiI	GAWTC	3 cut(s)	730, 803, 1073
Tru1I	TTAA	5 cut(s)	234, 398, 704, 773, 936
Tru9I	TTAA	5 cut(s)	234, 398, 704, 773, 936
TscAI	CASTG	1 cut(s)	525
TseFI	GTSAC	2 cut(s)	709, 809
Tsp45I	GTSAC	2 cut(s)	709, 809
TspDTI	ATGAA	6 cut(s)	17, 444, 601, 639, 931, 1023
TspGWI	ACGGA	1 cut(s)	32
TspRI	CASTG	1 cut(s)	525
VpaK11BI	GGWCC	1 cut(s)	745
XapI	RAATTY	3 cut(s)	442, 862, 938
XceI	RCATGY	2 cut(s)	366, 603
XmiI	GTMKAC	2 cut(s)	90, 789
XspI	CTAG	3 cut(s)	207, 272, 557
Zsp2I	ATGCAT	1 cut(s)	657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.