Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0022772

Physical Location & Seq

Genomic Coordinates Reverse (-)

1405543 .. 1407742

Gene Structure 2200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031017

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGAACTACAATCTGCCGGTCCTTGGTTTGCCGACTCCCCTTCGTTGCCTGACCTTCGACACGTTAGGTCAGATCAAAGTTATCGAAGTCGACAACGAAGGAGATCCTAGTGTGAGGTTAACATTGGGAGAGGCCGAGGCCGATGCCTCAAAAGGCGTGGTGACCGCCTCCTTGGACAGTAAAAGGCGCAAATTAGCTGTAGCCAGAAAGGATGGCACGGTTGATCTTCTTAATCCTGATACTGGCGACGTATATTGCCACAACATTCTAGTTTCTGATGATCAGCGTGGGGAGGGTGATATTATTGGATTATATGTCAGGGCCAGATATTCAACTAAGAGATCTTGCAATATTCTCACATGCACAACTGGGGGTCGGCTAAGTGAATGGAATGTGAATTGTCAAGGTCGTACCCATTGTTGCCAAATGAATGCAACGGAAGATTATTTTGTATTTGGAGGGTCGCCTGATGCACTGTGTGTATGGAAGGTTCAAGAGTGCATCTGGAAACTAGAAGATCCTAAAAATAAATGTGCTAGAGAAACATTTTTCACATGTGCAACATTCATGGAAGAAAATGAAGAGATACTTGTTGCGGGCAACAATTTGCATGAGGTTATTGTCTATGATATTAAAAGTTGGATGGGAAAACCTGAATTGAAAGCCACATTCTGGGAGGAGACTCTTGAATTCTGGGTCCCTATTACAGCTATAGCAAAAGATTTAAGTGGCACAAAAGTGCATAGGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0022613 GO:0030684 GO:0030687 GO:0031974 GO:0031981 GO:0032991 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

251

Amino Acids

28.01

Weight (kDa)

5.09

Isoelectric Point (pI)

41.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022772)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0041021
rosa_laevigata	RLG00000031017
rosa_samantha	Rh5AG274800 Rh7BG377100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	672
AccI	GTMKAC	1 cut(s)	90
AciI	CCGC	2 cut(s)	165, 596
AclWI	GGATC	2 cut(s)	98, 512
AcsI	RAATTY	1 cut(s)	689
AdeI	CACNNNGTG	1 cut(s)	479
AfaI	GTAC	1 cut(s)	412
AfiI	CCNNNNNNNGG	3 cut(s)	23, 242, 672
AflIII	ACRYGT	2 cut(s)	60, 554
AgsI	TTSAA	4 cut(s)	333, 494, 661, 689
AleI	CACNNNNGTG	1 cut(s)	737
AluBI	AGCT	2 cut(s)	197, 710
AluI	AGCT	2 cut(s)	197, 710
Alw26I	GTCTC	1 cut(s)	674
AlwI	GGATC	2 cut(s)	98, 512
AoxI	GGCC	3 cut(s)	132, 138, 321
ApoI	RAATTY	1 cut(s)	689
AspLEI	GCGC	1 cut(s)	189
AspS9I	GGNCC	3 cut(s)	19, 321, 697
AsuHPI	GGTGA	2 cut(s)	172, 308
AvaII	GGWCC	2 cut(s)	19, 697
BccI	CCATC	2 cut(s)	206, 637
BcgI	CGANNNNNNTGC	2 cut(s)	125, 159
BclI	TGATCA	1 cut(s)	280
BcoDI	GTCTC	1 cut(s)	674
BfaI	CTAG	4 cut(s)	108, 269, 512, 537
BfmI	CTRYAG	2 cut(s)	198, 711
BglII	AGATCT	1 cut(s)	341
Bme18I	GGWCC	2 cut(s)	19, 697
BmgT120I	GGNCC	3 cut(s)	19, 321, 697
BmiI	GGNNCC	2 cut(s)	698, 699
BmrI	ACTGGG	1 cut(s)	378
BmsI	GCATC	3 cut(s)	133, 460, 510
BmuI	ACTGGG	1 cut(s)	378
BsaJI	CCNNGG	3 cut(s)	22, 135, 171
Bsc4I	CCNNNNNNNGG	3 cut(s)	23, 242, 672
Bse118I	RCCGGY	1 cut(s)	16
Bse1I	ACTGG	2 cut(s)	247, 373
BseDI	CCNNGG	3 cut(s)	22, 135, 171
BseGI	GGATG	2 cut(s)	217, 648
BseLI	CCNNNNNNNGG	3 cut(s)	23, 242, 672
BseNI	ACTGG	2 cut(s)	247, 373
BseRI	GAGGAG	1 cut(s)	692
BshFI	GGCC	3 cut(s)	134, 140, 323
BsiSI	CCGG	1 cut(s)	17
BslFI	GGGAC	1 cut(s)	683
BslI	CCNNNNNNNGG	3 cut(s)	23, 242, 672
BsmAI	GTCTC	1 cut(s)	674
BsmFI	GGGAC	1 cut(s)	683
BsmI	GAATGC	1 cut(s)	436
BsnI	GGCC	3 cut(s)	134, 140, 323
Bsp143I	GATC	6 cut(s)	72, 103, 223, 280, 341, 517
BspACI	CCGC	2 cut(s)	165, 596
BspANI	GGCC	3 cut(s)	134, 140, 323
BspLI	GGNNCC	2 cut(s)	698, 699
BspPI	GGATC	2 cut(s)	98, 512
BsrFI	RCCGGY	1 cut(s)	16
BsrI	ACTGG	2 cut(s)	247, 373
BssAI	RCCGGY	1 cut(s)	16
BssECI	CCNNGG	3 cut(s)	22, 135, 171
BssMI	GATC	6 cut(s)	72, 103, 223, 280, 341, 517
BssT1I	CCWWGG	2 cut(s)	22, 171
Bst4CI	ACNGT	3 cut(s)	179, 220, 477
Bst6I	CTCTTC	1 cut(s)	576
BstC8I	GCNNGC	1 cut(s)	598
BstDEI	CTNAG	2 cut(s)	336, 380
BstEII	GGTNACC	1 cut(s)	160
BstF5I	GGATG	2 cut(s)	217, 648
BstHHI	GCGC	1 cut(s)	189
BstKTI	GATC	6 cut(s)	75, 106, 226, 283, 344, 520
BstMAI	GTCTC	1 cut(s)	674
BstMBI	GATC	6 cut(s)	72, 103, 223, 280, 341, 517
BstNSI	RCATGY	2 cut(s)	363, 558
BstPI	GGTNACC	1 cut(s)	160
BstSFI	CTRYAG	2 cut(s)	198, 711
BstX2I	RGATCY	3 cut(s)	103, 341, 517
BstYI	RGATCY	3 cut(s)	103, 341, 517
BsuRI	GGCC	3 cut(s)	134, 140, 323
BtsCI	GGATG	2 cut(s)	217, 648
BtsIMutI	CAGTG	1 cut(s)	473
Cac8I	GCNNGC	1 cut(s)	598
CfoI	GCGC	1 cut(s)	189
Cfr10I	RCCGGY	1 cut(s)	16
Cfr13I	GGNCC	3 cut(s)	19, 321, 697
Csp6I	GTAC	1 cut(s)	411
CspCI	CAANNNNNGTGG	2 cut(s)	138, 173
CviAII	CATG	4 cut(s)	360, 555, 568, 611
CviJI	RGCY	8 cut(s)	134, 140, 197, 203, 323, 379, 665, 710
CviKI_1	RGCY	8 cut(s)	134, 140, 197, 203, 323, 379, 665, 710
CviQI	GTAC	1 cut(s)	411
DdeI	CTNAG	2 cut(s)	336, 380
DpnI	GATC	6 cut(s)	74, 105, 225, 282, 343, 519
DpnII	GATC	6 cut(s)	72, 103, 223, 280, 341, 517
DraIII	CACNNNGTG	1 cut(s)	479
Eam1104I	CTCTTC	1 cut(s)	576
EarI	CTCTTC	1 cut(s)	576
Eco130I	CCWWGG	2 cut(s)	22, 171
Eco47I	GGWCC	2 cut(s)	19, 697
Eco91I	GGTNACC	1 cut(s)	160
EcoO109I	RGGNCCY	1 cut(s)	697
EcoO65I	GGTNACC	1 cut(s)	160
EcoRI	GAATTC	1 cut(s)	689
EcoT14I	CCWWGG	2 cut(s)	22, 171
ErhI	CCWWGG	2 cut(s)	22, 171
FaeI	CATG	4 cut(s)	363, 558, 571, 614
FalI	AAGNNNNNCTT	2 cut(s)	573, 605
FaqI	GGGAC	1 cut(s)	683
FatI	CATG	4 cut(s)	359, 554, 567, 610
FauI	CCCGC	1 cut(s)	589
FbaI	TGATCA	1 cut(s)	280
FblI	GTMKAC	1 cut(s)	90
FokI	GGATG	2 cut(s)	224, 655
FspBI	CTAG	4 cut(s)	108, 269, 512, 537
GlaI	GCGC	1 cut(s)	188
HaeIII	GGCC	3 cut(s)	134, 140, 323
HapII	CCGG	1 cut(s)	17
HhaI	GCGC	1 cut(s)	189
Hin1II	CATG	4 cut(s)	363, 558, 571, 614
Hin6I	GCGC	1 cut(s)	187
HinP1I	GCGC	1 cut(s)	187
HincII	GTYRAC	2 cut(s)	91, 120
HindII	GTYRAC	2 cut(s)	91, 120
HinfI	GANTC	2 cut(s)	34, 682
HpaI	GTTAAC	1 cut(s)	120
HpaII	CCGG	1 cut(s)	17
HphI	GGTGA	2 cut(s)	172, 308
Hpy166II	GTNNAC	2 cut(s)	91, 120
Hpy188I	TCNGA	2 cut(s)	72, 277
Hpy188III	TCNNGA	4 cut(s)	236, 494, 505, 686
Hpy8I	GTNNAC	2 cut(s)	91, 120
Hpy99I	CGWCG	1 cut(s)	251
HpyAV	CCTTC	4 cut(s)	50, 64, 92, 481
HpyCH4III	ACNGT	3 cut(s)	179, 220, 477
HpyCH4IV	ACGT	2 cut(s)	62, 249
HpyCH4V	TGCA	8 cut(s)	348, 363, 434, 473, 501, 560, 610, 742
HpyF3I	CTNAG	2 cut(s)	336, 380
HpySE526I	ACGT	2 cut(s)	62, 249
Hsp92II	CATG	4 cut(s)	363, 558, 571, 614
HspAI	GCGC	1 cut(s)	187
KflI	GGGWCCC	1 cut(s)	697
Ksp22I	TGATCA	1 cut(s)	280
KspAI	GTTAAC	1 cut(s)	120
Kzo9I	GATC	6 cut(s)	72, 103, 223, 280, 341, 517
LweI	GCATC	3 cut(s)	133, 460, 510
MaeI	CTAG	4 cut(s)	108, 269, 512, 537
MaeII	ACGT	2 cut(s)	62, 249
MaeIII	GTNAC	1 cut(s)	160
MalI	GATC	6 cut(s)	74, 105, 225, 282, 343, 519
MboI	GATC	6 cut(s)	72, 103, 223, 280, 341, 517
MboII	GAAGA	5 cut(s)	218, 452, 527, 584, 593
MflI	RGATCY	3 cut(s)	103, 341, 517
MluCI	AATT	5 cut(s)	191, 397, 604, 656, 689
MlyI	GAGTC	2 cut(s)	28, 676
MmeI	TCCRAC	1 cut(s)	620
MnlI	CCTC	9 cut(s)	108, 124, 130, 157, 178, 286, 452, 607, 670
MseI	TTAA	4 cut(s)	119, 231, 633, 725
MslI	CAYNNNNRTG	1 cut(s)	737
MspI	CCGG	1 cut(s)	17
Mva1269I	GAATGC	1 cut(s)	436
NdeII	GATC	6 cut(s)	72, 103, 223, 280, 341, 517
NlaIII	CATG	4 cut(s)	363, 558, 571, 614
NlaIV	GGNNCC	2 cut(s)	698, 699
NmeAIII	GCCGAG	1 cut(s)	160
NmuCI	GTSAC	1 cut(s)	160
NspI	RCATGY	2 cut(s)	363, 558
OliI	CACNNNNGTG	1 cut(s)	737
PciI	ACATGT	1 cut(s)	554
PctI	GAATGC	1 cut(s)	436
PflMI	CCANNNNNTGG	1 cut(s)	672
PleI	GAGTC	2 cut(s)	28, 676
PpsI	GAGTC	2 cut(s)	28, 676
PpuMI	RGGWCCY	1 cut(s)	697
PscI	ACATGT	1 cut(s)	554
Psp5II	RGGWCCY	1 cut(s)	697
PspEI	GGTNACC	1 cut(s)	160
PspN4I	GGNNCC	2 cut(s)	698, 699
PspPI	GGNCC	3 cut(s)	19, 321, 697
PspPPI	RGGWCCY	1 cut(s)	697
PsrI	GAACNNNNNNTAC	2 cut(s)	474, 506
PsuI	RGATCY	3 cut(s)	103, 341, 517
RsaI	GTAC	1 cut(s)	412
RsaNI	GTAC	1 cut(s)	411
RseI	CAYNNNNRTG	1 cut(s)	737
SalI	GTCGAC	1 cut(s)	89
SaqAI	TTAA	4 cut(s)	119, 231, 633, 725
Sau3AI	GATC	6 cut(s)	72, 103, 223, 280, 341, 517
Sau96I	GGNCC	3 cut(s)	19, 321, 697
SchI	GAGTC	2 cut(s)	28, 676
SfaNI	GCATC	3 cut(s)	133, 460, 510
SfcI	CTRYAG	2 cut(s)	198, 711
SinI	GGWCC	2 cut(s)	19, 697
SmiMI	CAYNNNNRTG	1 cut(s)	737
Sse9I	AATT	5 cut(s)	191, 397, 604, 656, 689
SsiI	CCGC	2 cut(s)	165, 596
SspI	AATATT	1 cut(s)	352
SspMI	CTAG	4 cut(s)	108, 269, 512, 537
StyI	CCWWGG	2 cut(s)	22, 171
TaaI	ACNGT	3 cut(s)	179, 220, 477
TaiI	ACGT	2 cut(s)	65, 252
TaqI	TCGA	3 cut(s)	57, 84, 90
TasI	AATT	5 cut(s)	191, 397, 604, 656, 689
Tru1I	TTAA	4 cut(s)	119, 231, 633, 725
Tru9I	TTAA	4 cut(s)	119, 231, 633, 725
TscAI	CASTG	1 cut(s)	480
TseFI	GTSAC	1 cut(s)	160
Tsp45I	GTSAC	1 cut(s)	160
TspDTI	ATGAA	4 cut(s)	17, 443, 556, 594
TspGWI	ACGGA	1 cut(s)	452
TspRI	CASTG	1 cut(s)	480
Van91I	CCANNNNNTGG	1 cut(s)	672
VpaK11BI	GGWCC	2 cut(s)	19, 697
XapI	RAATTY	1 cut(s)	689
XceI	RCATGY	2 cut(s)	363, 558
XmiI	GTMKAC	1 cut(s)	90
XspI	CTAG	4 cut(s)	108, 269, 512, 537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.