Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0022772

Physical Location & Seq

Genomic Coordinates Reverse (-)

36831587 .. 36835548

Gene Structure 3962 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG274800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGCTTCGGGTCAGATCACAGGTATTATTGCTCAGTTTATCAATCAAAAGTTTATTAATAACTGCCAAATTTCCCCAATTAAAGGTTTCATGGTTAATAGTTATCAATGTCGACAAAGAAGGAGATCCTATTGTGAGAGTATTGAGAGAGGCCGATGCCGATCCCGATCCCTCAAAAGGCGTGGTGGCCGCCTCCTTGGACAGTAAAAGGCACAAATTAGCTGTAGCTAGAAAGGATGGCACGGATGGATCACATAAGAAGCGAAATGAATGGAATGTGAATTCTCAAGGTCGTACCCATTTTTGCCAAATGGATGCAACCGAAGATTATTTTGTTTTTGGAGGGTCGCCTGATGCACTGTCTGTATGGAAGGTTGAAGAGTGCATCTGGAAACTAGAAGATCCTAAAAATAAATGTGTTAGAGAAACATTTTTCACATGTGCAACATTCATGGAAGATAATGAAGAGACACTTGTTGCAGGCAACAATATGCATGAGGTTGTTGTCTATGATACTAAATGTTGGATGGGAAATCCCGAATTAAAAGTCACATTCTGGGAGGAGGAGAATCTTGAATACTGGGTCCCTATTACAGCTATTGCAAATGATTTAAGTGGCACAAAAGTCTACATAGGGAATGATTCTGGTGACCTTGCTTCGGTTGATATTAGTTCAGGGAGAGTGATCAAATGCTTTGAGAATTTGAAAAGATGGCCTCATAAGGACTCTCAAACCAGAAAAGTATCTAAATCTCCCATCCAAAATAACTCAATTAAATTCATTGCAAGGGACACGCAACATCCTCTAATATCATCAAGCTTGGATAGCCATCTACGCTTTTGGAATGAAGATAGTGGGAAGCTACTCTCCACGGTTTATCCTATGCAAGATCTCACAACTGTAATTTTTGATTCCTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0022613 GO:0030684 GO:0030687 GO:0031974 GO:0031981 GO:0032991 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

306

Amino Acids

34.69

Weight (kDa)

5.86

Isoelectric Point (pI)

40.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022772)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0041021
rosa_laevigata	RLG00000031017
rosa_samantha	Rh5AG274800 Rh7BG377100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	111, 627
AciI	CCGC	1 cut(s)	189
AclWI	GGATC	5 cut(s)	119, 155, 161, 256, 395
AcoI	YGGCCR	1 cut(s)	186
AcsI	RAATTY	4 cut(s)	68, 280, 700, 776
AfaI	GTAC	1 cut(s)	295
AfiI	CCNNNNNNNGG	3 cut(s)	82, 176, 658
AflIII	ACRYGT	1 cut(s)	437
AgsI	TTSAA	3 cut(s)	377, 575, 706
AluBI	AGCT	5 cut(s)	221, 227, 596, 819, 862
AluI	AGCT	5 cut(s)	221, 227, 596, 819, 862
Alw26I	GTCTC	1 cut(s)	461
AlwI	GGATC	5 cut(s)	119, 155, 161, 256, 395
AoxI	GGCC	3 cut(s)	150, 186, 713
ApoI	RAATTY	4 cut(s)	68, 280, 700, 776
ArsI	GACNNNNNNTTYG	2 cut(s)	531, 563
AseI	ATTAAT	1 cut(s)	56
AspS9I	GGNCC	1 cut(s)	583
AsuHPI	GGTGA	1 cut(s)	659
AvaII	GGWCC	1 cut(s)	583
BccI	CCATC	6 cut(s)	230, 239, 520, 705, 764, 837
BclI	TGATCA	1 cut(s)	684
BcoDI	GTCTC	1 cut(s)	461
BfaI	CTAG	2 cut(s)	228, 395
BfmI	CTRYAG	1 cut(s)	222
BglII	AGATCT	1 cut(s)	889
BisI	GCNGC	1 cut(s)	189
BlsI	GCNGC	1 cut(s)	190
Bme18I	GGWCC	1 cut(s)	583
BmgT120I	GGNCC	1 cut(s)	583
BmiI	GGNNCC	2 cut(s)	584, 585
BmrI	ACTGGG	1 cut(s)	589
BmsI	GCATC	4 cut(s)	145, 304, 343, 393
BmuI	ACTGGG	1 cut(s)	589
BpuEI	CTTGAG	1 cut(s)	270
BsaBI	GATNNNNATC	3 cut(s)	159, 165, 828
BsaJI	CCNNGG	2 cut(s)	195, 870
Bsc4I	CCNNNNNNNGG	3 cut(s)	82, 176, 658
Bse1I	ACTGG	1 cut(s)	584
Bse3DI	GCAATG	1 cut(s)	780
Bse8I	GATNNNNATC	3 cut(s)	159, 165, 828
BseDI	CCNNGG	2 cut(s)	195, 870
BseGI	GGATG	6 cut(s)	241, 250, 319, 531, 756, 799
BseJI	GATNNNNATC	3 cut(s)	159, 165, 828
BseLI	CCNNNNNNNGG	3 cut(s)	82, 176, 658
BseMI	GCAATG	1 cut(s)	780
BseMII	CTCAG	1 cut(s)	46
BseNI	ACTGG	1 cut(s)	584
BseRI	GAGGAG	2 cut(s)	575, 578
BshFI	GGCC	3 cut(s)	152, 188, 715
BslFI	GGGAC	2 cut(s)	569, 803
BslI	CCNNNNNNNGG	3 cut(s)	82, 176, 658
BsmAI	GTCTC	1 cut(s)	461
BsmFI	GGGAC	2 cut(s)	569, 803
BsnI	GGCC	3 cut(s)	152, 188, 715
Bsp143I	GATC	8 cut(s)	14, 124, 160, 166, 248, 400, 684, 889
BspACI	CCGC	1 cut(s)	189
BspANI	GGCC	3 cut(s)	152, 188, 715
BspCNI	CTCAG	1 cut(s)	45
BspLI	GGNNCC	2 cut(s)	584, 585
BspPI	GGATC	5 cut(s)	119, 155, 161, 256, 395
BsrDI	GCAATG	1 cut(s)	780
BsrI	ACTGG	1 cut(s)	584
BssECI	CCNNGG	2 cut(s)	195, 870
BssMI	GATC	8 cut(s)	14, 124, 160, 166, 248, 400, 684, 889
BssT1I	CCWWGG	1 cut(s)	195
Bst4CI	ACNGT	4 cut(s)	203, 360, 874, 901
Bst6I	CTCTTC	2 cut(s)	372, 459
BstC8I	GCNNGC	1 cut(s)	481
BstDEI	CTNAG	1 cut(s)	32
BstDSI	CCRYGG	1 cut(s)	870
BstEII	GGTNACC	1 cut(s)	647
BstF5I	GGATG	6 cut(s)	241, 250, 319, 531, 756, 799
BstKTI	GATC	8 cut(s)	17, 127, 163, 169, 251, 403, 687, 892
BstMAI	GTCTC	1 cut(s)	461
BstMBI	GATC	8 cut(s)	14, 124, 160, 166, 248, 400, 684, 889
BstMWI	GCNNNNNNNGC	2 cut(s)	825, 834
BstNSI	RCATGY	1 cut(s)	441
BstPI	GGTNACC	1 cut(s)	647
BstSFI	CTRYAG	1 cut(s)	222
BstX2I	RGATCY	3 cut(s)	124, 400, 889
BstYI	RGATCY	3 cut(s)	124, 400, 889
BsuRI	GGCC	3 cut(s)	152, 188, 715
BtgI	CCRYGG	1 cut(s)	870
BtsCI	GGATG	6 cut(s)	241, 250, 319, 531, 756, 799
BtsIMutI	CAGTG	1 cut(s)	356
Cac8I	GCNNGC	1 cut(s)	481
Cfr13I	GGNCC	1 cut(s)	583
Csp6I	GTAC	1 cut(s)	294
CspCI	CAANNNNNGTGG	2 cut(s)	162, 197
CviAII	CATG	4 cut(s)	90, 438, 451, 494
CviJI	RGCY	9 cut(s)	152, 188, 221, 227, 596, 715, 819, 828, 862
CviKI_1	RGCY	9 cut(s)	152, 188, 221, 227, 596, 715, 819, 828, 862
CviQI	GTAC	1 cut(s)	294
DdeI	CTNAG	1 cut(s)	32
DpnI	GATC	8 cut(s)	16, 126, 162, 168, 250, 402, 686, 891
DpnII	GATC	8 cut(s)	14, 124, 160, 166, 248, 400, 684, 889
EaeI	YGGCCR	1 cut(s)	186
Eam1104I	CTCTTC	2 cut(s)	372, 459
EarI	CTCTTC	2 cut(s)	372, 459
Eco130I	CCWWGG	1 cut(s)	195
Eco47I	GGWCC	1 cut(s)	583
Eco91I	GGTNACC	1 cut(s)	647
EcoO109I	RGGNCCY	1 cut(s)	583
EcoO65I	GGTNACC	1 cut(s)	647
EcoRI	GAATTC	1 cut(s)	280
EcoT14I	CCWWGG	1 cut(s)	195
EcoT22I	ATGCAT	1 cut(s)	495
ErhI	CCWWGG	1 cut(s)	195
FaeI	CATG	4 cut(s)	93, 441, 454, 497
FalI	AAGNNNNNCTT	2 cut(s)	456, 488
FaqI	GGGAC	2 cut(s)	569, 803
FatI	CATG	4 cut(s)	89, 437, 450, 493
FbaI	TGATCA	1 cut(s)	684
FblI	GTMKAC	2 cut(s)	111, 627
Fnu4HI	GCNGC	1 cut(s)	189
FokI	GGATG	6 cut(s)	248, 257, 326, 538, 743, 786
Fsp4HI	GCNGC	1 cut(s)	189
FspBI	CTAG	2 cut(s)	228, 395
GluI	GCNGC	1 cut(s)	189
HaeIII	GGCC	3 cut(s)	152, 188, 715
Hin1II	CATG	4 cut(s)	93, 441, 454, 497
HincII	GTYRAC	1 cut(s)	112
HindII	GTYRAC	1 cut(s)	112
HindIII	AAGCTT	1 cut(s)	817
HinfI	GANTC	4 cut(s)	568, 641, 725, 911
HphI	GGTGA	1 cut(s)	659
Hpy166II	GTNNAC	2 cut(s)	112, 628
Hpy188I	TCNGA	1 cut(s)	14
Hpy188III	TCNNGA	4 cut(s)	164, 388, 536, 572
Hpy8I	GTNNAC	2 cut(s)	112, 628
HpyAV	CCTTC	2 cut(s)	113, 364
HpyCH4III	ACNGT	4 cut(s)	203, 360, 874, 901
HpyCH4V	TGCA	9 cut(s)	317, 356, 384, 443, 479, 493, 602, 785, 886
HpyF10VI	GCNNNNNNNGC	2 cut(s)	825, 834
HpyF3I	CTNAG	1 cut(s)	32
Hsp92II	CATG	4 cut(s)	93, 441, 454, 497
KflI	GGGWCCC	1 cut(s)	583
Ksp22I	TGATCA	1 cut(s)	684
Kzo9I	GATC	8 cut(s)	14, 124, 160, 166, 248, 400, 684, 889
LpnPI	CCDG	9 cut(s)	5, 363, 373, 465, 541, 565, 630, 660, 748
LweI	GCATC	4 cut(s)	145, 304, 343, 393
MaeI	CTAG	2 cut(s)	228, 395
MaeIII	GTNAC	2 cut(s)	547, 647
MalI	GATC	8 cut(s)	16, 126, 162, 168, 250, 402, 686, 891
MboI	GATC	8 cut(s)	14, 124, 160, 166, 248, 400, 684, 889
MboII	GAAGA	6 cut(s)	335, 389, 410, 467, 476, 860
MflI	RGATCY	3 cut(s)	124, 400, 889
MluCI	AATT	9 cut(s)	68, 77, 215, 280, 539, 700, 771, 776, 903
MlyI	GAGTC	1 cut(s)	719
MmeI	TCCRAC	1 cut(s)	503
MnlI	CCTC	9 cut(s)	142, 181, 202, 335, 490, 553, 556, 726, 813
Mph1103I	ATGCAT	1 cut(s)	495
MseI	TTAA	6 cut(s)	56, 80, 95, 542, 611, 774
MwoI	GCNNNNNNNGC	2 cut(s)	825, 834
NdeII	GATC	8 cut(s)	14, 124, 160, 166, 248, 400, 684, 889
NlaIII	CATG	4 cut(s)	93, 441, 454, 497
NlaIV	GGNNCC	2 cut(s)	584, 585
NmuCI	GTSAC	2 cut(s)	547, 647
NsiI	ATGCAT	1 cut(s)	495
NspI	RCATGY	1 cut(s)	441
PciI	ACATGT	1 cut(s)	437
PfeI	GAWTC	3 cut(s)	568, 641, 911
PkrI	GCNGC	1 cut(s)	190
PleI	GAGTC	1 cut(s)	719
PpsI	GAGTC	1 cut(s)	719
PpuMI	RGGWCCY	1 cut(s)	583
PscI	ACATGT	1 cut(s)	437
PshBI	ATTAAT	1 cut(s)	56
Psp5II	RGGWCCY	1 cut(s)	583
PspEI	GGTNACC	1 cut(s)	647
PspN4I	GGNNCC	2 cut(s)	584, 585
PspPI	GGNCC	1 cut(s)	583
PspPPI	RGGWCCY	1 cut(s)	583
PsuI	RGATCY	3 cut(s)	124, 400, 889
RsaI	GTAC	1 cut(s)	295
RsaNI	GTAC	1 cut(s)	294
SalI	GTCGAC	1 cut(s)	110
SaqAI	TTAA	6 cut(s)	56, 80, 95, 542, 611, 774
SatI	GCNGC	1 cut(s)	189
Sau3AI	GATC	8 cut(s)	14, 124, 160, 166, 248, 400, 684, 889
Sau96I	GGNCC	1 cut(s)	583
SchI	GAGTC	1 cut(s)	719
SfaNI	GCATC	4 cut(s)	145, 304, 343, 393
SfcI	CTRYAG	1 cut(s)	222
SinI	GGWCC	1 cut(s)	583
SmlI	CTYRAG	1 cut(s)	285
SmoI	CTYRAG	1 cut(s)	285
Sse9I	AATT	9 cut(s)	68, 77, 215, 280, 539, 700, 771, 776, 903
SsiI	CCGC	1 cut(s)	189
SspMI	CTAG	2 cut(s)	228, 395
StyI	CCWWGG	1 cut(s)	195
TaaI	ACNGT	4 cut(s)	203, 360, 874, 901
TaqI	TCGA	1 cut(s)	111
TasI	AATT	9 cut(s)	68, 77, 215, 280, 539, 700, 771, 776, 903
TauI	GCSGC	1 cut(s)	191
TfiI	GAWTC	3 cut(s)	568, 641, 911
Tru1I	TTAA	6 cut(s)	56, 80, 95, 542, 611, 774
Tru9I	TTAA	6 cut(s)	56, 80, 95, 542, 611, 774
TscAI	CASTG	1 cut(s)	363
TseFI	GTSAC	2 cut(s)	547, 647
Tsp45I	GTSAC	2 cut(s)	547, 647
TspDTI	ATGAA	6 cut(s)	78, 282, 439, 477, 769, 861
TspGWI	ACGGA	1 cut(s)	257
TspRI	CASTG	1 cut(s)	363
VpaK11BI	GGWCC	1 cut(s)	583
VspI	ATTAAT	1 cut(s)	56
XapI	RAATTY	4 cut(s)	68, 280, 700, 776
XceI	RCATGY	1 cut(s)	441
XmiI	GTMKAC	2 cut(s)	111, 627
XspI	CTAG	2 cut(s)	228, 395
Zsp2I	ATGCAT	1 cut(s)	495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.