RchiOBHm_Chr5g0043281
TCP Family

Belongs to the chaperonin (HSP60) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0020556
Physical Location & Seq
Reverse (-)
38201985 .. 38203196
1212 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32159

Sequence Viewer

Length: 474 bp
ATGCTTGGAACTTGCAAAAAGGTCACAATTTCAAAAGATGACACTGTAATTCTTGACGGTGCTGGTGACAAGAAGGAAATTGAGGAAAGATGTGAACAGATTTGTCTCGTTGAGAGACTGGCAAAACTTTCTGGTGGTGTTGCTATGTTCAAGATTGGAGGAGCTAGTGAAGCTAAAGTTAGTGAGAAGAAGGATAAGGTTACTGATGCCTTGACTGCCACAAAGGCAGCCGTTGAAGAGGGTATAGTACCAGGTGGTGGTGTTGCACTCCTTTATGCAGCTAAAGAGTTTGACAAACTTCCAACTACTAACTTTGATCAGAAGATTGGAGTTCAGATTATTCAGAATGCTTTGAAGGCTGGCAGCAATATGGGTCTTCTTCTTCGAGGTCTAAAACGAGAAGATATACAGCGAGGACAGGTGTGTGGTTTTATTTGCGCTAGGAAATTTACCTGTTCTCAATATGTACTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003735 GO:0005198 GO:0005488 GO:0005507 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006457 GO:0006458 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006950 GO:0006996 GO:0007005 GO:0008104 GO:0008144 GO:0008150 GO:0009266 GO:0009408 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0017076 GO:0022626 GO:0030554 GO:0031090 GO:0031967 GO:0031974 GO:0031975 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0035639 GO:0036094 GO:0042221 GO:0042788 GO:0042886 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044183 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044743 GO:0045041 GO:0045184 GO:0046686 GO:0046872 GO:0046907 GO:0046914 GO:0050896 GO:0051082 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061077 GO:0065002 GO:0070013 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0071944 GO:0072594 GO:0072655 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363 GO:1990542 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03018 ko04212 ko04940 ko05134 ko05152 map03018 map04212 map04940 map05134 map05152
Pfam Domains
Protein Families
Cpn60_TCP1

Protein Analysis

157

Amino Acids

16.83

Weight (kDa)

8.71

Isoelectric Point (pI)

22.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cpn60_TCP1 PF00118 2 - 119 4.9e-13 TCP-1/cpn60 chaperonin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020556)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0043281 RchiOBHm_Chr7g0234301
rosa_multiflora Rmu_ssc0000467.1_g000048
rosa_samantha Rh5BG296900 Rh5DG306600 Rh7CG460300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 257
AcsI RAATTY 1 cut(s) 446
AfaI GTAC 2 cut(s) 249, 468
AfiI CCNNNNNNNGG 1 cut(s) 257
AgsI TTSAA 4 cut(s) 33, 151, 236, 355
AjnI CCWGG 1 cut(s) 250
AluBI AGCT 3 cut(s) 164, 173, 281
AluI AGCT 3 cut(s) 164, 173, 281
Alw26I GTCTC 2 cut(s) 109, 110
ApeKI GCWGC 3 cut(s) 227, 278, 363
ApoI RAATTY 1 cut(s) 446
AspLEI GCGC 1 cut(s) 440
AsuHPI GGTGA 1 cut(s) 77
BbsI GAAGAC 1 cut(s) 368
BbvI GCAGC 3 cut(s) 239, 290, 375
BceAI ACGGC 1 cut(s) 215
BciT130I CCWGG 1 cut(s) 252
BclI TGATCA 1 cut(s) 316
BcoDI GTCTC 2 cut(s) 109, 110
BfaI CTAG 2 cut(s) 165, 441
BglI GCCNNNNNGGC 1 cut(s) 224
BisI GCNGC 3 cut(s) 228, 279, 364
BlsI GCNGC 3 cut(s) 229, 280, 365
Bme1390I CCNGG 1 cut(s) 252
BmrFI CCNGG 1 cut(s) 252
BmsI GCATC 1 cut(s) 196
BpiI GAAGAC 1 cut(s) 368
Bsc4I CCNNNNNNNGG 1 cut(s) 257
Bse1I ACTGG 1 cut(s) 123
BseBI CCWGG 1 cut(s) 252
BseLI CCNNNNNNNGG 1 cut(s) 257
BseNI ACTGG 1 cut(s) 123
BseRI GAGGAG 1 cut(s) 174
BseXI GCAGC 3 cut(s) 239, 290, 375
BslI CCNNNNNNNGG 1 cut(s) 257
BsmAI GTCTC 2 cut(s) 109, 110
BsmI GAATGC 1 cut(s) 352
Bsp143I GATC 1 cut(s) 316
BsrI ACTGG 1 cut(s) 123
BssMI GATC 1 cut(s) 316
Bst2UI CCWGG 1 cut(s) 252
Bst4CI ACNGT 2 cut(s) 46, 59
Bst6I CTCTTC 1 cut(s) 231
BstC8I GCNNGC 1 cut(s) 361
BstHHI GCGC 1 cut(s) 440
BstKTI GATC 1 cut(s) 319
BstMAI GTCTC 2 cut(s) 109, 110
BstMBI GATC 1 cut(s) 316
BstMWI GCNNNNNNNGC 4 cut(s) 170, 215, 224, 356
BstNI CCWGG 1 cut(s) 252
BstSCI CCNGG 1 cut(s) 250
BstV1I GCAGC 3 cut(s) 239, 290, 375
BstV2I GAAGAC 1 cut(s) 368
BtsIMutI CAGTG 1 cut(s) 42
Cac8I GCNNGC 1 cut(s) 361
CfoI GCGC 1 cut(s) 440
CsiI ACCWGGT 1 cut(s) 250
Csp6I GTAC 2 cut(s) 248, 467
CviJI RGCY 5 cut(s) 164, 173, 230, 281, 359
CviKI_1 RGCY 5 cut(s) 164, 173, 230, 281, 359
CviQI GTAC 2 cut(s) 248, 467
DpnI GATC 1 cut(s) 318
DpnII GATC 1 cut(s) 316
Eam1104I CTCTTC 1 cut(s) 231
EarI CTCTTC 1 cut(s) 231
EcoRII CCWGG 1 cut(s) 250
FaiI YATR 6 cut(s) 146, 245, 276, 371, 407, 465
FbaI TGATCA 1 cut(s) 316
Fnu4HI GCNGC 3 cut(s) 228, 279, 364
Fsp4HI GCNGC 3 cut(s) 228, 279, 364
FspBI CTAG 2 cut(s) 165, 441
GlaI GCGC 1 cut(s) 439
GluI GCNGC 3 cut(s) 228, 279, 364
HhaI GCGC 1 cut(s) 440
Hin6I GCGC 1 cut(s) 438
HinP1I GCGC 1 cut(s) 438
HphI GGTGA 1 cut(s) 77
Hpy166II GTNNAC 1 cut(s) 95
Hpy188I TCNGA 3 cut(s) 321, 336, 345
Hpy188III TCNNGA 2 cut(s) 53, 151
Hpy8I GTNNAC 1 cut(s) 95
HpyAV CCTTC 3 cut(s) 67, 184, 349
HpyCH4III ACNGT 2 cut(s) 46, 59
HpyCH4V TGCA 3 cut(s) 15, 266, 278
HpyF10VI GCNNNNNNNGC 4 cut(s) 170, 215, 224, 356
HspAI GCGC 1 cut(s) 438
Ksp22I TGATCA 1 cut(s) 316
Kzo9I GATC 1 cut(s) 316
LmnI GCTCC 1 cut(s) 161
LpnPI CCDG 8 cut(s) 48, 104, 117, 237, 264, 345, 404, 466
Lsp1109I GCAGC 3 cut(s) 239, 290, 375
LweI GCATC 1 cut(s) 196
MabI ACCWGGT 1 cut(s) 250
MaeI CTAG 2 cut(s) 165, 441
MaeIII GTNAC 3 cut(s) 22, 65, 199
MalI GATC 1 cut(s) 318
MboI GATC 1 cut(s) 316
MboII GAAGA 7 cut(s) 199, 248, 334, 368, 371, 374, 413
MluCI AATT 4 cut(s) 27, 48, 78, 446
MmeI TCCRAC 1 cut(s) 326
MnlI CCTC 5 cut(s) 76, 152, 232, 380, 407
MspR9I CCNGG 1 cut(s) 252
Mva1269I GAATGC 1 cut(s) 352
MvaI CCWGG 1 cut(s) 252
MwoI GCNNNNNNNGC 4 cut(s) 170, 215, 224, 356
NdeII GATC 1 cut(s) 316
NmuCI GTSAC 2 cut(s) 22, 65
PctI GAATGC 1 cut(s) 352
PflMI CCANNNNNTGG 1 cut(s) 257
PkrI GCNGC 3 cut(s) 229, 280, 365
Psp6I CCWGG 1 cut(s) 250
PspGI CCWGG 1 cut(s) 250
RsaI GTAC 2 cut(s) 249, 468
RsaNI GTAC 2 cut(s) 248, 467
SatI GCNGC 3 cut(s) 228, 279, 364
Sau3AI GATC 1 cut(s) 316
ScrFI CCNGG 1 cut(s) 252
SetI ASST 9 cut(s) 24, 166, 175, 201, 256, 283, 391, 423, 455
SexAI ACCWGGT 1 cut(s) 250
SfaNI GCATC 1 cut(s) 196
Sse9I AATT 4 cut(s) 27, 48, 78, 446
SspMI CTAG 2 cut(s) 165, 441
StyD4I CCNGG 1 cut(s) 250
TaaI ACNGT 2 cut(s) 46, 59
TaqI TCGA 1 cut(s) 385
TasI AATT 4 cut(s) 27, 48, 78, 446
TatI WGTACW 1 cut(s) 466
TscAI CASTG 1 cut(s) 49
TseFI GTSAC 2 cut(s) 22, 65
TseI GCWGC 3 cut(s) 227, 278, 363
Tsp45I GTSAC 2 cut(s) 22, 65
TspRI CASTG 1 cut(s) 49
Van91I CCANNNNNTGG 1 cut(s) 257
XapI RAATTY 1 cut(s) 446
XspI CTAG 2 cut(s) 165, 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.