Rh5DG306600
TCP Family

Belongs to the chaperonin (HSP60) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0020556
Physical Location & Seq
Reverse (-)
38759696 .. 38760404
709 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG306600.1

Sequence Viewer

Length: 351 bp
ATGACAAAGGAGAAGTTGCAGGAGAGACTGGCAAAACTTTCTGGTGGTGTTGCTATGTTCAAGATTGGAGGAGCTAGTGAAGCTAAAGTTAGTGAGAAGAAGGATAAGGTTACTGATGCCTTGACTGCCACAAAGGCAGCCGTTGAAGAGGGTATAGTACCAGGTGGTGGTGTTGCACTCCTTTATGCAGCTAAAGAGTTTGACAAACTTCCAACTACTAACTTTGATCAGAAGATTGGAGTTCAGATTATTCAGAATGCTTTGAAGGTTTGTATATTTTGCTCGTCTCATGATGGGTTTGTGAACTTGGCTAGGCTGGCAGCAATATGGGTCTTCTTCTTCGAGGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003735 GO:0005198 GO:0005488 GO:0005507 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006457 GO:0006458 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006950 GO:0006996 GO:0007005 GO:0008104 GO:0008144 GO:0008150 GO:0009266 GO:0009408 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0017076 GO:0022626 GO:0030554 GO:0031090 GO:0031967 GO:0031974 GO:0031975 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0035639 GO:0036094 GO:0042221 GO:0042788 GO:0042886 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044183 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044743 GO:0045041 GO:0045184 GO:0046686 GO:0046872 GO:0046907 GO:0046914 GO:0050896 GO:0051082 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061077 GO:0065002 GO:0070013 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0071944 GO:0072594 GO:0072655 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363 GO:1990542 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03018 ko04212 ko04940 ko05134 ko05152 map03018 map04212 map04940 map05134 map05152
Pfam Domains
Protein Families
Cpn60_TCP1

Protein Analysis

116

Amino Acids

12.48

Weight (kDa)

8.56

Isoelectric Point (pI)

18.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cpn60_TCP1 PF00118 14 - 91 2.1e-11 TCP-1/cpn60 chaperonin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020556)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0043281 RchiOBHm_Chr7g0234301
rosa_multiflora Rmu_ssc0000467.1_g000048
rosa_samantha Rh5BG296900 Rh5DG306600 Rh7CG460300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 167
AfaI GTAC 1 cut(s) 159
AfiI CCNNNNNNNGG 1 cut(s) 167
AgsI TTSAA 3 cut(s) 61, 146, 265
AjnI CCWGG 1 cut(s) 160
AluBI AGCT 3 cut(s) 74, 83, 191
AluI AGCT 3 cut(s) 74, 83, 191
Alw26I GTCTC 2 cut(s) 19, 291
ApeKI GCWGC 3 cut(s) 137, 188, 320
BbsI GAAGAC 1 cut(s) 325
BbvI GCAGC 3 cut(s) 149, 200, 332
BccI CCATC 1 cut(s) 287
BceAI ACGGC 1 cut(s) 125
BciT130I CCWGG 1 cut(s) 162
BclI TGATCA 1 cut(s) 226
BcoDI GTCTC 2 cut(s) 19, 291
BfaI CTAG 2 cut(s) 75, 312
BglI GCCNNNNNGGC 1 cut(s) 134
BisI GCNGC 3 cut(s) 138, 189, 321
BlsI GCNGC 3 cut(s) 139, 190, 322
Bme1390I CCNGG 1 cut(s) 162
BmrFI CCNGG 1 cut(s) 162
BmsI GCATC 1 cut(s) 106
BpiI GAAGAC 1 cut(s) 325
Bsc4I CCNNNNNNNGG 1 cut(s) 167
Bse1I ACTGG 1 cut(s) 33
BseBI CCWGG 1 cut(s) 162
BseLI CCNNNNNNNGG 1 cut(s) 167
BseNI ACTGG 1 cut(s) 33
BseRI GAGGAG 1 cut(s) 84
BseXI GCAGC 3 cut(s) 149, 200, 332
BslI CCNNNNNNNGG 1 cut(s) 167
BsmAI GTCTC 2 cut(s) 19, 291
BsmBI CGTCTC 1 cut(s) 291
BsmI GAATGC 1 cut(s) 262
Bsp143I GATC 1 cut(s) 226
BspHI TCATGA 1 cut(s) 289
BsrI ACTGG 1 cut(s) 33
BssMI GATC 1 cut(s) 226
Bst2UI CCWGG 1 cut(s) 162
Bst6I CTCTTC 1 cut(s) 141
BstC8I GCNNGC 1 cut(s) 318
BstKTI GATC 1 cut(s) 229
BstMAI GTCTC 2 cut(s) 19, 291
BstMBI GATC 1 cut(s) 226
BstMWI GCNNNNNNNGC 4 cut(s) 80, 125, 134, 317
BstNI CCWGG 1 cut(s) 162
BstSCI CCNGG 1 cut(s) 160
BstV1I GCAGC 3 cut(s) 149, 200, 332
BstV2I GAAGAC 1 cut(s) 325
Cac8I GCNNGC 1 cut(s) 318
CciI TCATGA 1 cut(s) 289
CsiI ACCWGGT 1 cut(s) 160
Csp6I GTAC 1 cut(s) 158
CviAII CATG 1 cut(s) 290
CviJI RGCY 6 cut(s) 74, 83, 140, 191, 311, 316
CviKI_1 RGCY 6 cut(s) 74, 83, 140, 191, 311, 316
CviQI GTAC 1 cut(s) 158
DpnI GATC 1 cut(s) 228
DpnII GATC 1 cut(s) 226
Eam1104I CTCTTC 1 cut(s) 141
EarI CTCTTC 1 cut(s) 141
EcoRII CCWGG 1 cut(s) 160
Esp3I CGTCTC 1 cut(s) 291
FaeI CATG 1 cut(s) 293
FaiI YATR 6 cut(s) 56, 155, 186, 275, 291, 328
FatI CATG 1 cut(s) 289
FbaI TGATCA 1 cut(s) 226
Fnu4HI GCNGC 3 cut(s) 138, 189, 321
Fsp4HI GCNGC 3 cut(s) 138, 189, 321
FspBI CTAG 2 cut(s) 75, 312
GluI GCNGC 3 cut(s) 138, 189, 321
Hin1II CATG 1 cut(s) 293
Hpy166II GTNNAC 1 cut(s) 304
Hpy188I TCNGA 3 cut(s) 231, 246, 255
Hpy188III TCNNGA 2 cut(s) 61, 290
Hpy8I GTNNAC 1 cut(s) 304
HpyAV CCTTC 2 cut(s) 94, 259
HpyCH4V TGCA 3 cut(s) 19, 176, 188
HpyF10VI GCNNNNNNNGC 4 cut(s) 80, 125, 134, 317
Hsp92II CATG 1 cut(s) 293
Ksp22I TGATCA 1 cut(s) 226
Kzo9I GATC 1 cut(s) 226
LmnI GCTCC 1 cut(s) 71
LpnPI CCDG 6 cut(s) 5, 14, 27, 147, 174, 302
Lsp1109I GCAGC 3 cut(s) 149, 200, 332
LweI GCATC 1 cut(s) 106
MabI ACCWGGT 1 cut(s) 160
MaeI CTAG 2 cut(s) 75, 312
MaeIII GTNAC 1 cut(s) 109
MalI GATC 1 cut(s) 228
MboI GATC 1 cut(s) 226
MboII GAAGA 6 cut(s) 109, 158, 244, 325, 328, 331
MmeI TCCRAC 1 cut(s) 236
MnlI CCTC 3 cut(s) 62, 142, 337
MspR9I CCNGG 1 cut(s) 162
Mva1269I GAATGC 1 cut(s) 262
MvaI CCWGG 1 cut(s) 162
MwoI GCNNNNNNNGC 4 cut(s) 80, 125, 134, 317
NdeII GATC 1 cut(s) 226
NlaIII CATG 1 cut(s) 293
PagI TCATGA 1 cut(s) 289
PctI GAATGC 1 cut(s) 262
PflMI CCANNNNNTGG 1 cut(s) 167
PkrI GCNGC 3 cut(s) 139, 190, 322
Psp6I CCWGG 1 cut(s) 160
PspGI CCWGG 1 cut(s) 160
RsaI GTAC 1 cut(s) 159
RsaNI GTAC 1 cut(s) 158
SatI GCNGC 3 cut(s) 138, 189, 321
Sau3AI GATC 1 cut(s) 226
ScrFI CCNGG 1 cut(s) 162
SetI ASST 7 cut(s) 76, 85, 111, 166, 193, 270, 348
SexAI ACCWGGT 1 cut(s) 160
SfaNI GCATC 1 cut(s) 106
SspMI CTAG 2 cut(s) 75, 312
StyD4I CCNGG 1 cut(s) 160
TaqI TCGA 1 cut(s) 342
TseI GCWGC 3 cut(s) 137, 188, 320
Van91I CCANNNNNTGG 1 cut(s) 167
XspI CTAG 2 cut(s) 75, 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.