Chaperonin CPN60-2
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr5g0043281 RchiOBHm_Chr7g0234301 |
| rosa_multiflora | Rmu_ssc0000467.1_g000048 |
| rosa_samantha | Rh5BG296900 Rh5DG306600 Rh7CG460300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 198 |
| AcuI | CTGAAG | 2 cut(s) | 162, 222 |
| AgsI | TTSAA | 2 cut(s) | 55, 310 |
| AluBI | AGCT | 3 cut(s) | 131, 140, 236 |
| AluI | AGCT | 3 cut(s) | 131, 140, 236 |
| Alw26I | GTCTC | 1 cut(s) | 336 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 200 |
| ApeKI | GCWGC | 2 cut(s) | 194, 233 |
| BbsI | GAAGAC | 1 cut(s) | 370 |
| BbvI | GCAGC | 2 cut(s) | 206, 245 |
| BccI | CCATC | 1 cut(s) | 332 |
| BcoDI | GTCTC | 1 cut(s) | 336 |
| BfaI | CTAG | 3 cut(s) | 84, 132, 357 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 191 |
| BisI | GCNGC | 3 cut(s) | 195, 198, 234 |
| BlsI | GCNGC | 3 cut(s) | 196, 199, 235 |
| BmsI | GCATC | 1 cut(s) | 163 |
| BpiI | GAAGAC | 1 cut(s) | 370 |
| Bse3DI | GCAATG | 1 cut(s) | 375 |
| BseMI | GCAATG | 1 cut(s) | 375 |
| BseRI | GAGGAG | 1 cut(s) | 141 |
| BseXI | GCAGC | 2 cut(s) | 206, 245 |
| BsmAI | GTCTC | 1 cut(s) | 336 |
| BsmBI | CGTCTC | 1 cut(s) | 336 |
| BsmI | GAATGC | 1 cut(s) | 307 |
| BspACI | CCGC | 1 cut(s) | 198 |
| BspHI | TCATGA | 1 cut(s) | 334 |
| BsrDI | GCAATG | 1 cut(s) | 375 |
| Bst4CI | ACNGT | 2 cut(s) | 67, 80 |
| Bst6I | CTCTTC | 1 cut(s) | 198 |
| BstMAI | GTCTC | 1 cut(s) | 336 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 137, 182, 191 |
| BstV1I | GCAGC | 2 cut(s) | 206, 245 |
| BstV2I | GAAGAC | 1 cut(s) | 370 |
| BtsIMutI | CAGTG | 1 cut(s) | 63 |
| CaiI | CAGNNNCTG | 1 cut(s) | 200 |
| CciI | TCATGA | 1 cut(s) | 334 |
| CviAII | CATG | 1 cut(s) | 335 |
| CviJI | RGCY | 6 cut(s) | 131, 140, 197, 236, 356, 361 |
| CviKI_1 | RGCY | 6 cut(s) | 131, 140, 197, 236, 356, 361 |
| Eam1104I | CTCTTC | 1 cut(s) | 198 |
| EarI | CTCTTC | 1 cut(s) | 198 |
| Eco57I | CTGAAG | 2 cut(s) | 162, 222 |
| Esp3I | CGTCTC | 1 cut(s) | 336 |
| FaeI | CATG | 1 cut(s) | 338 |
| FaiI | YATR | 3 cut(s) | 231, 320, 336 |
| FatI | CATG | 1 cut(s) | 334 |
| Fnu4HI | GCNGC | 3 cut(s) | 195, 198, 234 |
| Fsp4HI | GCNGC | 3 cut(s) | 195, 198, 234 |
| FspBI | CTAG | 3 cut(s) | 84, 132, 357 |
| GluI | GCNGC | 3 cut(s) | 195, 198, 234 |
| Hin1II | CATG | 1 cut(s) | 338 |
| Hpy166II | GTNNAC | 2 cut(s) | 116, 349 |
| Hpy188I | TCNGA | 2 cut(s) | 291, 300 |
| Hpy188III | TCNNGA | 2 cut(s) | 74, 335 |
| Hpy8I | GTNNAC | 2 cut(s) | 116, 349 |
| HpyAV | CCTTC | 4 cut(s) | 20, 88, 151, 304 |
| HpyCH4III | ACNGT | 2 cut(s) | 67, 80 |
| HpyCH4V | TGCA | 2 cut(s) | 221, 233 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 137, 182, 191 |
| Hsp92II | CATG | 1 cut(s) | 338 |
| LmnI | GCTCC | 1 cut(s) | 128 |
| LpnPI | CCDG | 2 cut(s) | 191, 347 |
| Lsp1109I | GCAGC | 2 cut(s) | 206, 245 |
| LweI | GCATC | 1 cut(s) | 163 |
| MaeI | CTAG | 3 cut(s) | 84, 132, 357 |
| MaeIII | GTNAC | 3 cut(s) | 44, 86, 166 |
| MboII | GAAGA | 6 cut(s) | 166, 215, 289, 370, 373, 376 |
| MluCI | AATT | 3 cut(s) | 49, 69, 99 |
| MmeI | TCCRAC | 2 cut(s) | 225, 281 |
| MnlI | CCTC | 3 cut(s) | 97, 119, 199 |
| MspA1I | CMGCKG | 1 cut(s) | 200 |
| Mva1269I | GAATGC | 1 cut(s) | 307 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 137, 182, 191 |
| NlaIII | CATG | 1 cut(s) | 338 |
| NmuCI | GTSAC | 2 cut(s) | 44, 86 |
| PagI | TCATGA | 1 cut(s) | 334 |
| PctI | GAATGC | 1 cut(s) | 307 |
| PkrI | GCNGC | 3 cut(s) | 196, 199, 235 |
| PstNI | CAGNNNCTG | 1 cut(s) | 200 |
| SatI | GCNGC | 3 cut(s) | 195, 198, 234 |
| SetI | ASST | 5 cut(s) | 46, 133, 142, 238, 315 |
| SfaNI | GCATC | 1 cut(s) | 163 |
| Sse9I | AATT | 3 cut(s) | 49, 69, 99 |
| SsiI | CCGC | 1 cut(s) | 198 |
| SspMI | CTAG | 3 cut(s) | 84, 132, 357 |
| TaaI | ACNGT | 2 cut(s) | 67, 80 |
| TaqI | TCGA | 1 cut(s) | 387 |
| TasI | AATT | 3 cut(s) | 49, 69, 99 |
| TauI | GCSGC | 1 cut(s) | 200 |
| TscAI | CASTG | 1 cut(s) | 70 |
| TseFI | GTSAC | 2 cut(s) | 44, 86 |
| TseI | GCWGC | 2 cut(s) | 194, 233 |
| Tsp45I | GTSAC | 2 cut(s) | 44, 86 |
| TspRI | CASTG | 1 cut(s) | 70 |
| XspI | CTAG | 3 cut(s) | 84, 132, 357 |