Rh7CG460300
TCP Family

Belongs to the chaperonin (HSP60) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0020556
Physical Location & Seq
Forward (+)
61069167 .. 61091455
22289 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG460300.1

Sequence Viewer

Length: 186 bp
ATGACAAAGGAGAAGTTGCAGGAGAGACTGGCAAAACTTTCTGGTGGTGTTGCTATGTTCAAGATTGGAGGAGCTAGTGAAGCTAAAGTTAGTGAGAAGAAGGATAGGGTTACTGATGCCTTGACTACCACAAAGGCAGCCGTTGAAGAGGGTATAGTACCAGCTATTGGATATTATGATAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003735 GO:0005198 GO:0005488 GO:0005507 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006457 GO:0006458 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006950 GO:0006996 GO:0007005 GO:0008104 GO:0008144 GO:0008150 GO:0009266 GO:0009408 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0017076 GO:0022626 GO:0030554 GO:0031090 GO:0031967 GO:0031974 GO:0031975 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0035639 GO:0036094 GO:0042221 GO:0042788 GO:0042886 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044183 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044743 GO:0045041 GO:0045184 GO:0046686 GO:0046872 GO:0046907 GO:0046914 GO:0050896 GO:0051082 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061077 GO:0065002 GO:0070013 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0071944 GO:0072594 GO:0072655 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363 GO:1990542 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03018 ko04212 ko04940 ko05134 ko05152 map03018 map04212 map04940 map05134 map05152
Pfam Domains
Protein Families
Cpn60_TCP1

Protein Analysis

61

Amino Acids

6.56

Weight (kDa)

9.05

Isoelectric Point (pI)

28.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020556)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0043281 RchiOBHm_Chr7g0234301
rosa_multiflora Rmu_ssc0000467.1_g000048
rosa_samantha Rh5BG296900 Rh5DG306600 Rh7CG460300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 167
AfaI GTAC 1 cut(s) 159
AfiI CCNNNNNNNGG 1 cut(s) 167
AgsI TTSAA 2 cut(s) 61, 146
AluBI AGCT 3 cut(s) 74, 83, 164
AluI AGCT 3 cut(s) 74, 83, 164
Alw26I GTCTC 1 cut(s) 19
ApeKI GCWGC 1 cut(s) 137
BbvI GCAGC 1 cut(s) 149
BceAI ACGGC 1 cut(s) 125
BcoDI GTCTC 1 cut(s) 19
BfaI CTAG 1 cut(s) 75
BisI GCNGC 1 cut(s) 138
BlsI GCNGC 1 cut(s) 139
BmsI GCATC 1 cut(s) 106
Bsc4I CCNNNNNNNGG 1 cut(s) 167
Bse1I ACTGG 1 cut(s) 33
BseLI CCNNNNNNNGG 1 cut(s) 167
BseNI ACTGG 1 cut(s) 33
BseRI GAGGAG 1 cut(s) 84
BseXI GCAGC 1 cut(s) 149
BslI CCNNNNNNNGG 1 cut(s) 167
BsmAI GTCTC 1 cut(s) 19
BsrI ACTGG 1 cut(s) 33
Bst6I CTCTTC 1 cut(s) 141
BstMAI GTCTC 1 cut(s) 19
BstMWI GCNNNNNNNGC 1 cut(s) 80
BstV1I GCAGC 1 cut(s) 149
Csp6I GTAC 1 cut(s) 158
CviJI RGCY 4 cut(s) 74, 83, 140, 164
CviKI_1 RGCY 4 cut(s) 74, 83, 140, 164
CviQI GTAC 1 cut(s) 158
Eam1104I CTCTTC 1 cut(s) 141
EarI CTCTTC 1 cut(s) 141
FaiI YATR 3 cut(s) 56, 155, 177
Fnu4HI GCNGC 1 cut(s) 138
Fsp4HI GCNGC 1 cut(s) 138
FspBI CTAG 1 cut(s) 75
GluI GCNGC 1 cut(s) 138
Hpy188III TCNNGA 1 cut(s) 61
HpyAV CCTTC 1 cut(s) 94
HpyCH4V TGCA 1 cut(s) 19
HpyF10VI GCNNNNNNNGC 1 cut(s) 80
LmnI GCTCC 1 cut(s) 71
LpnPI CCDG 4 cut(s) 5, 14, 27, 174
Lsp1109I GCAGC 1 cut(s) 149
LweI GCATC 1 cut(s) 106
MaeI CTAG 1 cut(s) 75
MaeIII GTNAC 1 cut(s) 109
MboII GAAGA 2 cut(s) 109, 158
MnlI CCTC 2 cut(s) 62, 142
MwoI GCNNNNNNNGC 1 cut(s) 80
PflMI CCANNNNNTGG 1 cut(s) 167
PkrI GCNGC 1 cut(s) 139
RsaI GTAC 1 cut(s) 159
RsaNI GTAC 1 cut(s) 158
SatI GCNGC 1 cut(s) 138
SetI ASST 4 cut(s) 76, 85, 166, 185
SfaNI GCATC 1 cut(s) 106
SgeI CNNG 7 cut(s) 32, 41, 54, 73, 87, 133, 173
SspMI CTAG 1 cut(s) 75
TseI GCWGC 1 cut(s) 137
Van91I CCANNNNNTGG 1 cut(s) 167
XspI CTAG 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.