RchiOBHm_Chr5g0051921

Involved in the biogenesis of the 60S ribosomal subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0022767
Physical Location & Seq
Forward (+)
53388531 .. 53389594
1064 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32936

Sequence Viewer

Length: 957 bp
ATGAAGACTCTGATTGGTCAAGGAGGTGAGGCTACGAATGATGATGGGGTACTCTTGACCATGAGCACTTTGACCGAGGAGGGGGTTATCTCTGTAAAGAATGCAGCTTGTGAGAGGTTGTTGAATCAGAGAGTTGAGTTGAAGATGAAATCTAAAAAGATAAATGATTGTTTAAATCGTTTTCATGTTGCGATGTCAAAGCCACGTGACCAAAAGGAAAGGCCTCCATGTATACCTCAGGCTGTTTTAGAAGCTGAGCTAGCTAATGATGAGTGGAAAGAGGATATCATACCTGAAATTCTTGATGGGCACAATGTATTTGACTTTGTTGATCCCGATATTTTGGATAGGCTTGAGGAGTTAAAACGAGAAGAAGGAATCATGCAGGCAGATGTGGATGATGATGTGGAGATGGATGGAATGGAGTTGACTCCAGAAGAGCAGAAGACATTGGCTCAGATAAGGAAAAATAAAAGCTTGCTGATTCAACAACATATAAACAAGAAAAGTACAGCGGTAACTCGGCCTACAGTACCTAGGAAATTTGACAAGGACAGGGAGTTCACAACAAAGAGAATGGGGAGGCAGCTGTCAGTGTTGGGAATTGATCCTAGTATGGCAATTAACCGAGCCCGCAGCAGATCTCTCTCTAGGAGGGGCCAAAAGAGAGAGCGATCAGTTGACAAGGGTGATAGTGAAGTTGTTGGTGTCATGGATATGGATGTGGATACACTCAACAAGAAGCTGCGCTTGATGTCTAGACCCCGTTCAAGGTCAAGATCAAGACCGCCTACTGTTGTTGATCAAAAGTCTAAAGCACTAGACAAGGCCCGGAAATCTGTGAAGAACAGAAATAAGAATGCTAGACGTGGAGAGGCAGATAGAGTTGCTCCCAATTTGAAACCTAAGCACTTGTTCTCTGGAAAACGATCAAATGGAAAAACCCAAAGGCGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
MMR_HSR1 NOG1 NOGCT

Protein Analysis

318

Amino Acids

36.24

Weight (kDa)

9.79

Isoelectric Point (pI)

51.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NOGCT PF08155 87 - 114 3.3e-13 NOGCT (NUC087) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022767)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0051921
rosa_multiflora Rmu_co8248217.1_g000001
rosa_samantha Rh5BG359000 Rh5CG384600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 232
AciI CCGC 3 cut(s) 515, 634, 788
AclWI GGATC 2 cut(s) 326, 602
AcsI RAATTY 2 cut(s) 297, 542
AcvI CACGTG 1 cut(s) 206
AfaI GTAC 3 cut(s) 51, 511, 534
AfiI CCNNNNNNNGG 2 cut(s) 81, 771
AgsI TTSAA 5 cut(s) 124, 142, 488, 771, 901
AjiI CACGTC 1 cut(s) 869
AloI GAACNNNNNNTCC 2 cut(s) 545, 577
AluBI AGCT 7 cut(s) 107, 254, 259, 263, 477, 589, 745
AluI AGCT 7 cut(s) 107, 254, 259, 263, 477, 589, 745
Alw21I GWGCWC 1 cut(s) 68
AlwI GGATC 2 cut(s) 326, 602
AoxI GGCC 4 cut(s) 221, 524, 658, 828
ApeKI GCWGC 4 cut(s) 104, 586, 636, 745
ApoI RAATTY 2 cut(s) 297, 542
AspA2I CCTAGG 1 cut(s) 536
AspLEI GCGC 2 cut(s) 750, 954
AspS9I GGNCC 2 cut(s) 658, 829
AsuC2I CCSGG 1 cut(s) 832
AsuHPI GGTGA 2 cut(s) 38, 701
AsuNHI GCTAGC 1 cut(s) 259
AvrII CCTAGG 1 cut(s) 536
AxyI CCTNAGG 1 cut(s) 237
BaeGI GKGCMC 1 cut(s) 312
BanII GRGCYC 1 cut(s) 634
BbrPI CACGTG 1 cut(s) 206
BbsI GAAGAC 2 cut(s) 11, 452
Bbv12I GWGCWC 1 cut(s) 68
BbvI GCAGC 4 cut(s) 116, 598, 648, 732
BccI CCATC 4 cut(s) 38, 299, 406, 410
BciVI GTATCC 1 cut(s) 721
BclI TGATCA 1 cut(s) 802
BcnI CCSGG 1 cut(s) 832
BfaI CTAG 7 cut(s) 260, 537, 612, 651, 759, 821, 864
BfmI CTRYAG 1 cut(s) 528
BfoI RGCGCY 1 cut(s) 955
BfuI GTATCC 1 cut(s) 721
BglII AGATCT 1 cut(s) 641
BisI GCNGC 4 cut(s) 105, 587, 637, 746
BlnI CCTAGG 1 cut(s) 536
BlpI GCTNAGC 1 cut(s) 255
BlsI GCNGC 4 cut(s) 106, 588, 638, 747
Bme1390I CCNGG 1 cut(s) 832
BmgBI CACGTC 1 cut(s) 869
BmgT120I GGNCC 2 cut(s) 658, 829
BmiI GGNNCC 1 cut(s) 659
BmrFI CCNGG 1 cut(s) 832
BmtI GCTAGC 1 cut(s) 263
BpiI GAAGAC 2 cut(s) 11, 452
BpmI CTGGAG 1 cut(s) 417
Bpu10I CCTNAGC 1 cut(s) 906
Bpu1102I GCTNAGC 1 cut(s) 255
BpuEI CTTGAG 1 cut(s) 374
BpuMI CCSGG 1 cut(s) 832
BsaAI YACGTR 1 cut(s) 206
BsaJI CCNNGG 2 cut(s) 75, 536
Bsc4I CCNNNNNNNGG 2 cut(s) 81, 771
Bse21I CCTNAGG 1 cut(s) 237
BseDI CCNNGG 2 cut(s) 75, 536
BseGI GGATG 3 cut(s) 403, 421, 727
BseLI CCNNNNNNNGG 2 cut(s) 81, 771
BseMII CTCAG 3 cut(s) 246, 251, 470
BseRI GAGGAG 2 cut(s) 92, 371
BseSI GKGCMC 1 cut(s) 312
BseXI GCAGC 4 cut(s) 116, 598, 648, 732
BshFI GGCC 4 cut(s) 223, 526, 660, 830
BsiHKAI GWGCWC 1 cut(s) 68
BsiSI CCGG 1 cut(s) 832
BslI CCNNNNNNNGG 2 cut(s) 81, 771
BsmI GAATGC 2 cut(s) 106, 865
BsnI GGCC 4 cut(s) 223, 526, 660, 830
Bsp1286I GDGCHC 3 cut(s) 68, 312, 634
Bsp143I GATC 7 cut(s) 331, 607, 641, 674, 779, 802, 929
Bsp1720I GCTNAGC 1 cut(s) 255
BspACI CCGC 3 cut(s) 515, 634, 788
BspANI GGCC 4 cut(s) 223, 526, 660, 830
BspCNI CTCAG 3 cut(s) 247, 250, 469
BspLI GGNNCC 1 cut(s) 659
BspOI GCTAGC 1 cut(s) 263
BspPI GGATC 2 cut(s) 326, 602
BspQI GCTCTTC 1 cut(s) 432
BssECI CCNNGG 2 cut(s) 75, 536
BssMI GATC 7 cut(s) 331, 607, 641, 674, 779, 802, 929
BssNAI GTATAC 1 cut(s) 233
BssT1I CCWWGG 1 cut(s) 536
Bst1107I GTATAC 1 cut(s) 233
Bst4CI ACNGT 2 cut(s) 532, 796
Bst6I CTCTTC 1 cut(s) 432
BstBAI YACGTR 1 cut(s) 206
BstC8I GCNNGC 4 cut(s) 261, 387, 479, 634
BstDEI CTNAG 4 cut(s) 237, 255, 456, 906
BstF5I GGATG 3 cut(s) 403, 421, 727
BstH2I RGCGCY 1 cut(s) 955
BstHHI GCGC 2 cut(s) 750, 954
BstKTI GATC 7 cut(s) 334, 610, 644, 677, 782, 805, 932
BstMBI GATC 7 cut(s) 331, 607, 641, 674, 779, 802, 929
BstMWI GCNNNNNNNGC 1 cut(s) 260
BstSCI CCNGG 1 cut(s) 830
BstSFI CTRYAG 1 cut(s) 528
BstSLI GKGCMC 1 cut(s) 312
BstV1I GCAGC 4 cut(s) 116, 598, 648, 732
BstV2I GAAGAC 2 cut(s) 11, 452
BstX2I RGATCY 1 cut(s) 641
BstYI RGATCY 1 cut(s) 641
BstZ17I GTATAC 1 cut(s) 233
Bsu36I CCTNAGG 1 cut(s) 237
BsuI GTATCC 1 cut(s) 721
BsuRI GGCC 4 cut(s) 223, 526, 660, 830
BtgZI GCGATG 1 cut(s) 206
BtrI CACGTC 1 cut(s) 869
BtsCI GGATG 3 cut(s) 403, 421, 727
BtsIMutI CAGTG 1 cut(s) 600
Cac8I GCNNGC 4 cut(s) 261, 387, 479, 634
CfoI GCGC 2 cut(s) 750, 954
Cfr13I GGNCC 2 cut(s) 658, 829
Csp6I GTAC 3 cut(s) 50, 510, 533
CviAII CATG 5 cut(s) 61, 185, 228, 382, 712
CviQI GTAC 3 cut(s) 50, 510, 533
DdeI CTNAG 4 cut(s) 237, 255, 456, 906
DpnI GATC 7 cut(s) 333, 609, 643, 676, 781, 804, 931
DpnII GATC 7 cut(s) 331, 607, 641, 674, 779, 802, 929
DraI TTTAAA 1 cut(s) 174
Eam1104I CTCTTC 1 cut(s) 432
EarI CTCTTC 1 cut(s) 432
Eco130I CCWWGG 1 cut(s) 536
Eco147I AGGCCT 1 cut(s) 223
Eco24I GRGCYC 1 cut(s) 634
Eco32I GATATC 1 cut(s) 286
Eco72I CACGTG 1 cut(s) 206
Eco81I CCTNAGG 1 cut(s) 237
EcoRV GATATC 1 cut(s) 286
EcoT14I CCWWGG 1 cut(s) 536
EcoT38I GRGCYC 1 cut(s) 634
ErhI CCWWGG 1 cut(s) 536
FaeI CATG 5 cut(s) 64, 188, 231, 385, 715
FalI AAGNNNNNCTT 2 cut(s) 734, 766
FatI CATG 5 cut(s) 60, 184, 227, 381, 711
FauI CCCGC 1 cut(s) 641
FbaI TGATCA 1 cut(s) 802
FblI GTMKAC 1 cut(s) 232
Fnu4HI GCNGC 4 cut(s) 105, 587, 637, 746
FokI GGATG 3 cut(s) 410, 428, 734
FriOI GRGCYC 1 cut(s) 634
Fsp4HI GCNGC 4 cut(s) 105, 587, 637, 746
FspBI CTAG 7 cut(s) 260, 537, 612, 651, 759, 821, 864
GlaI GCGC 2 cut(s) 749, 953
GluI GCNGC 4 cut(s) 105, 587, 637, 746
GsuI CTGGAG 1 cut(s) 417
HaeII RGCGCY 1 cut(s) 955
HaeIII GGCC 4 cut(s) 223, 526, 660, 830
HapII CCGG 1 cut(s) 832
HhaI GCGC 2 cut(s) 750, 954
Hin1II CATG 5 cut(s) 64, 188, 231, 385, 715
Hin6I GCGC 2 cut(s) 748, 952
HinP1I GCGC 2 cut(s) 748, 952
HincII GTYRAC 2 cut(s) 429, 682
HindII GTYRAC 2 cut(s) 429, 682
HindIII AAGCTT 1 cut(s) 475
HinfI GANTC 5 cut(s) 7, 124, 378, 430, 484
HpaII CCGG 1 cut(s) 832
HphI GGTGA 2 cut(s) 38, 701
Hpy166II GTNNAC 4 cut(s) 233, 429, 564, 682
Hpy188I TCNGA 3 cut(s) 12, 129, 459
Hpy188III TCNNGA 8 cut(s) 55, 302, 335, 434, 759, 777, 783, 921
Hpy8I GTNNAC 4 cut(s) 233, 429, 564, 682
HpyAV CCTTC 1 cut(s) 368
HpyCH4III ACNGT 2 cut(s) 532, 796
HpyCH4IV ACGT 2 cut(s) 205, 868
HpyCH4V TGCA 2 cut(s) 104, 385
HpyF10VI GCNNNNNNNGC 1 cut(s) 260
HpyF3I CTNAG 4 cut(s) 237, 255, 456, 906
HpySE526I ACGT 2 cut(s) 205, 868
Hsp92II CATG 5 cut(s) 64, 188, 231, 385, 715
HspAI GCGC 2 cut(s) 748, 952
Ksp22I TGATCA 1 cut(s) 802
Kzo9I GATC 7 cut(s) 331, 607, 641, 674, 779, 802, 929
LguI GCTCTTC 1 cut(s) 432
LmnI GCTCC 1 cut(s) 895
LpnPI CCDG 7 cut(s) 224, 306, 371, 447, 541, 845, 906
Lsp1109I GCAGC 4 cut(s) 116, 598, 648, 732
MaeI CTAG 7 cut(s) 260, 537, 612, 651, 759, 821, 864
MaeII ACGT 2 cut(s) 205, 868
MaeIII GTNAC 2 cut(s) 206, 517
MalI GATC 7 cut(s) 333, 609, 643, 676, 781, 804, 931
MboI GATC 7 cut(s) 331, 607, 641, 674, 779, 802, 929
MboII GAAGA 6 cut(s) 16, 154, 383, 449, 457, 856
MflI RGATCY 1 cut(s) 641
MhlI GDGCHC 3 cut(s) 68, 312, 634
MluCI AATT 5 cut(s) 297, 542, 603, 621, 895
MlyI GAGTC 1 cut(s) 424
MseI TTAA 3 cut(s) 173, 362, 624
MslI CAYNNNNRTG 1 cut(s) 716
MspA1I CMGCKG 2 cut(s) 515, 589
MspI CCGG 1 cut(s) 832
MspR9I CCNGG 1 cut(s) 832
Mva1269I GAATGC 2 cut(s) 106, 865
MwoI GCNNNNNNNGC 1 cut(s) 260
NciI CCSGG 1 cut(s) 832
NdeII GATC 7 cut(s) 331, 607, 641, 674, 779, 802, 929
NheI GCTAGC 1 cut(s) 259
NlaIII CATG 5 cut(s) 64, 188, 231, 385, 715
NlaIV GGNNCC 1 cut(s) 659
NmeAIII GCCGAG 1 cut(s) 502
NmuCI GTSAC 1 cut(s) 206
PceI AGGCCT 1 cut(s) 223
PciSI GCTCTTC 1 cut(s) 432
PctI GAATGC 2 cut(s) 106, 865
PfeI GAWTC 3 cut(s) 124, 378, 484
PkrI GCNGC 4 cut(s) 106, 588, 638, 747
PleI GAGTC 1 cut(s) 424
PmaCI CACGTG 1 cut(s) 206
PmlI CACGTG 1 cut(s) 206
PpsI GAGTC 1 cut(s) 424
Ppu21I YACGTR 1 cut(s) 206
PspCI CACGTG 1 cut(s) 206
PspN4I GGNNCC 1 cut(s) 659
PspPI GGNCC 2 cut(s) 658, 829
PsuI RGATCY 1 cut(s) 641
PvuII CAGCTG 1 cut(s) 589
RsaI GTAC 3 cut(s) 51, 511, 534
RsaNI GTAC 3 cut(s) 50, 510, 533
RseI CAYNNNNRTG 1 cut(s) 716
SapI GCTCTTC 1 cut(s) 432
SaqAI TTAA 3 cut(s) 173, 362, 624
SatI GCNGC 4 cut(s) 105, 587, 637, 746
Sau3AI GATC 7 cut(s) 331, 607, 641, 674, 779, 802, 929
Sau96I GGNCC 2 cut(s) 658, 829
SchI GAGTC 1 cut(s) 424
ScrFI CCNGG 1 cut(s) 832
SduI GDGCHC 3 cut(s) 68, 312, 634
SfcI CTRYAG 1 cut(s) 528
SmiMI CAYNNNNRTG 1 cut(s) 716
SmlI CTYRAG 1 cut(s) 353
SmoI CTYRAG 1 cut(s) 353
Sse9I AATT 5 cut(s) 297, 542, 603, 621, 895
SseBI AGGCCT 1 cut(s) 223
SsiI CCGC 3 cut(s) 515, 634, 788
SspMI CTAG 7 cut(s) 260, 537, 612, 651, 759, 821, 864
StuI AGGCCT 1 cut(s) 223
StyD4I CCNGG 1 cut(s) 830
StyI CCWWGG 1 cut(s) 536
TaaI ACNGT 2 cut(s) 532, 796
TaiI ACGT 2 cut(s) 208, 871
TaqII GACCGA 1 cut(s) 89
TasI AATT 5 cut(s) 297, 542, 603, 621, 895
TatI WGTACW 1 cut(s) 509
TfiI GAWTC 3 cut(s) 124, 378, 484
Tru1I TTAA 3 cut(s) 173, 362, 624
Tru9I TTAA 3 cut(s) 173, 362, 624
TscAI CASTG 1 cut(s) 600
TseFI GTSAC 1 cut(s) 206
TseI GCWGC 4 cut(s) 104, 586, 636, 745
Tsp45I GTSAC 1 cut(s) 206
TspDTI ATGAA 3 cut(s) 17, 161, 173
TspRI CASTG 1 cut(s) 600
XapI RAATTY 2 cut(s) 297, 542
XbaI TCTAGA 1 cut(s) 758
XmaJI CCTAGG 1 cut(s) 536
XmiI GTMKAC 1 cut(s) 232
XspI CTAG 7 cut(s) 260, 537, 612, 651, 759, 821, 864
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.