Rh5BG359000

Involved in the biogenesis of the 60S ribosomal subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0022767
Physical Location & Seq
Reverse (-)
56067147 .. 56068017
871 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG359000.1

Sequence Viewer

Length: 576 bp
ATGCAGGCAGATGTGGATGATGATGTGGAGATGGATGGAATGGAGTTGACTCCAGAAGAGCAGAAGACATTGGCTCAGATAAGGAAAAATAAAAGCTTGCTGATTCAACAACATATAAACAAGAAAAGTACAGCGGTAACTCGGCCTACAGTACCTAGGAAATTTGACAAGGACAGGGAGTTCACAACAAAGAGAATGGGGAGGCAGCTGTCAGTGTTGGGAATTGATCCTAGTATGGCAATTAACCGAGCCCGCAGCAGATCTCTCTCTAGGAGGGGCCAAAAGAGAGAGCGATCAGTTGACAAGGGTGATAGTGAAGTTGTTGGTGTCATGGATATGGATGTGGATACACTCAACAAGAAGCTGCGCTTGATGTCTAGACCCCGTTCAAGGTCAAGATCAAGACCGCCTACTGTTGTTGATCAAAAGTCTAAAGCACTAGACAAGGCCCGGAAATCTGTGAAGAACAGAAATAAGAATGCTAGACGTGGAGAGGCAGATAGAGTTGCTCCCAATTTGAAACCTAAGCACTTGTTCTCTGGAAAACGATCAAATGGAAAAACCCAAAGGCGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
MMR_HSR1 NOG1 NOGCT

Protein Analysis

191

Amino Acids

21.89

Weight (kDa)

11.16

Isoelectric Point (pI)

58.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022767)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0051921
rosa_multiflora Rmu_co8248217.1_g000001
rosa_samantha Rh5BG359000 Rh5CG384600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 134, 253, 407
AclWI GGATC 1 cut(s) 221
AcsI RAATTY 1 cut(s) 161
AfaI GTAC 2 cut(s) 130, 153
AfiI CCNNNNNNNGG 1 cut(s) 390
AgsI TTSAA 3 cut(s) 107, 390, 520
AjiI CACGTC 1 cut(s) 488
AloI GAACNNNNNNTCC 2 cut(s) 164, 196
AluBI AGCT 3 cut(s) 96, 208, 364
AluI AGCT 3 cut(s) 96, 208, 364
AlwI GGATC 1 cut(s) 221
AoxI GGCC 3 cut(s) 143, 277, 447
ApeKI GCWGC 3 cut(s) 205, 255, 364
ApoI RAATTY 1 cut(s) 161
AspA2I CCTAGG 1 cut(s) 155
AspLEI GCGC 2 cut(s) 369, 573
AspS9I GGNCC 2 cut(s) 277, 448
AsuC2I CCSGG 1 cut(s) 451
AsuHPI GGTGA 1 cut(s) 320
AvrII CCTAGG 1 cut(s) 155
BanII GRGCYC 1 cut(s) 253
BbsI GAAGAC 1 cut(s) 71
BbvI GCAGC 3 cut(s) 217, 267, 351
BccI CCATC 2 cut(s) 25, 29
BciVI GTATCC 1 cut(s) 340
BclI TGATCA 1 cut(s) 421
BcnI CCSGG 1 cut(s) 451
BfaI CTAG 6 cut(s) 156, 231, 270, 378, 440, 483
BfmI CTRYAG 1 cut(s) 147
BfoI RGCGCY 1 cut(s) 574
BfuI GTATCC 1 cut(s) 340
BglII AGATCT 1 cut(s) 260
BisI GCNGC 3 cut(s) 206, 256, 365
BlnI CCTAGG 1 cut(s) 155
BlsI GCNGC 3 cut(s) 207, 257, 366
Bme1390I CCNGG 1 cut(s) 451
BmgBI CACGTC 1 cut(s) 488
BmgT120I GGNCC 2 cut(s) 277, 448
BmiI GGNNCC 1 cut(s) 278
BmrFI CCNGG 1 cut(s) 451
BpiI GAAGAC 1 cut(s) 71
BpmI CTGGAG 1 cut(s) 36
Bpu10I CCTNAGC 1 cut(s) 525
BpuMI CCSGG 1 cut(s) 451
BsaJI CCNNGG 1 cut(s) 155
Bsc4I CCNNNNNNNGG 1 cut(s) 390
BseDI CCNNGG 1 cut(s) 155
BseGI GGATG 3 cut(s) 22, 40, 346
BseLI CCNNNNNNNGG 1 cut(s) 390
BseMII CTCAG 1 cut(s) 89
BseXI GCAGC 3 cut(s) 217, 267, 351
BshFI GGCC 3 cut(s) 145, 279, 449
BsiSI CCGG 1 cut(s) 451
BslI CCNNNNNNNGG 1 cut(s) 390
BsmI GAATGC 1 cut(s) 484
BsnI GGCC 3 cut(s) 145, 279, 449
Bsp1286I GDGCHC 1 cut(s) 253
Bsp143I GATC 6 cut(s) 226, 260, 293, 398, 421, 548
BspACI CCGC 3 cut(s) 134, 253, 407
BspANI GGCC 3 cut(s) 145, 279, 449
BspCNI CTCAG 1 cut(s) 88
BspLI GGNNCC 1 cut(s) 278
BspPI GGATC 1 cut(s) 221
BspQI GCTCTTC 1 cut(s) 51
BssECI CCNNGG 1 cut(s) 155
BssMI GATC 6 cut(s) 226, 260, 293, 398, 421, 548
BssT1I CCWWGG 1 cut(s) 155
Bst4CI ACNGT 2 cut(s) 151, 415
Bst6I CTCTTC 1 cut(s) 51
BstC8I GCNNGC 3 cut(s) 6, 98, 253
BstDEI CTNAG 2 cut(s) 75, 525
BstF5I GGATG 3 cut(s) 22, 40, 346
BstH2I RGCGCY 1 cut(s) 574
BstHHI GCGC 2 cut(s) 369, 573
BstKTI GATC 6 cut(s) 229, 263, 296, 401, 424, 551
BstMBI GATC 6 cut(s) 226, 260, 293, 398, 421, 548
BstSCI CCNGG 1 cut(s) 449
BstSFI CTRYAG 1 cut(s) 147
BstV1I GCAGC 3 cut(s) 217, 267, 351
BstV2I GAAGAC 1 cut(s) 71
BstX2I RGATCY 1 cut(s) 260
BstYI RGATCY 1 cut(s) 260
BsuI GTATCC 1 cut(s) 340
BsuRI GGCC 3 cut(s) 145, 279, 449
BtrI CACGTC 1 cut(s) 488
BtsCI GGATG 3 cut(s) 22, 40, 346
BtsIMutI CAGTG 1 cut(s) 219
Cac8I GCNNGC 3 cut(s) 6, 98, 253
CfoI GCGC 2 cut(s) 369, 573
Cfr13I GGNCC 2 cut(s) 277, 448
Csp6I GTAC 2 cut(s) 129, 152
CviAII CATG 1 cut(s) 331
CviJI RGCY 8 cut(s) 74, 96, 145, 208, 251, 279, 364, 449
CviKI_1 RGCY 8 cut(s) 74, 96, 145, 208, 251, 279, 364, 449
CviQI GTAC 2 cut(s) 129, 152
DdeI CTNAG 2 cut(s) 75, 525
DpnI GATC 6 cut(s) 228, 262, 295, 400, 423, 550
DpnII GATC 6 cut(s) 226, 260, 293, 398, 421, 548
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Eco130I CCWWGG 1 cut(s) 155
Eco24I GRGCYC 1 cut(s) 253
EcoT14I CCWWGG 1 cut(s) 155
EcoT38I GRGCYC 1 cut(s) 253
ErhI CCWWGG 1 cut(s) 155
FaeI CATG 1 cut(s) 334
FaiI YATR 5 cut(s) 114, 116, 236, 332, 338
FalI AAGNNNNNCTT 2 cut(s) 353, 385
FatI CATG 1 cut(s) 330
FauI CCCGC 1 cut(s) 260
FbaI TGATCA 1 cut(s) 421
Fnu4HI GCNGC 3 cut(s) 206, 256, 365
FokI GGATG 3 cut(s) 29, 47, 353
FriOI GRGCYC 1 cut(s) 253
Fsp4HI GCNGC 3 cut(s) 206, 256, 365
FspBI CTAG 6 cut(s) 156, 231, 270, 378, 440, 483
GlaI GCGC 2 cut(s) 368, 572
GluI GCNGC 3 cut(s) 206, 256, 365
GsuI CTGGAG 1 cut(s) 36
HaeII RGCGCY 1 cut(s) 574
HaeIII GGCC 3 cut(s) 145, 279, 449
HapII CCGG 1 cut(s) 451
HhaI GCGC 2 cut(s) 369, 573
Hin1II CATG 1 cut(s) 334
Hin6I GCGC 2 cut(s) 367, 571
HinP1I GCGC 2 cut(s) 367, 571
HincII GTYRAC 2 cut(s) 48, 301
HindII GTYRAC 2 cut(s) 48, 301
HindIII AAGCTT 1 cut(s) 94
HinfI GANTC 2 cut(s) 49, 103
HpaII CCGG 1 cut(s) 451
HphI GGTGA 1 cut(s) 320
Hpy166II GTNNAC 3 cut(s) 48, 183, 301
Hpy188I TCNGA 1 cut(s) 78
Hpy188III TCNNGA 5 cut(s) 53, 378, 396, 402, 540
Hpy8I GTNNAC 3 cut(s) 48, 183, 301
HpyCH4III ACNGT 2 cut(s) 151, 415
HpyCH4IV ACGT 1 cut(s) 487
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 2 cut(s) 75, 525
HpySE526I ACGT 1 cut(s) 487
Hsp92II CATG 1 cut(s) 334
HspAI GCGC 2 cut(s) 367, 571
Ksp22I TGATCA 1 cut(s) 421
Kzo9I GATC 6 cut(s) 226, 260, 293, 398, 421, 548
LguI GCTCTTC 1 cut(s) 51
LmnI GCTCC 1 cut(s) 514
LpnPI CCDG 4 cut(s) 66, 160, 464, 525
Lsp1109I GCAGC 3 cut(s) 217, 267, 351
MaeI CTAG 6 cut(s) 156, 231, 270, 378, 440, 483
MaeII ACGT 1 cut(s) 487
MaeIII GTNAC 1 cut(s) 136
MalI GATC 6 cut(s) 228, 262, 295, 400, 423, 550
MboI GATC 6 cut(s) 226, 260, 293, 398, 421, 548
MboII GAAGA 3 cut(s) 68, 76, 475
MflI RGATCY 1 cut(s) 260
MhlI GDGCHC 1 cut(s) 253
MluCI AATT 4 cut(s) 161, 222, 240, 514
MlyI GAGTC 1 cut(s) 43
MnlI CCTC 3 cut(s) 195, 267, 487
MseI TTAA 1 cut(s) 243
MslI CAYNNNNRTG 1 cut(s) 335
MspA1I CMGCKG 2 cut(s) 134, 208
MspI CCGG 1 cut(s) 451
MspR9I CCNGG 1 cut(s) 451
Mva1269I GAATGC 1 cut(s) 484
NciI CCSGG 1 cut(s) 451
NdeII GATC 6 cut(s) 226, 260, 293, 398, 421, 548
NlaIII CATG 1 cut(s) 334
NlaIV GGNNCC 1 cut(s) 278
NmeAIII GCCGAG 1 cut(s) 121
PciSI GCTCTTC 1 cut(s) 51
PctI GAATGC 1 cut(s) 484
PfeI GAWTC 1 cut(s) 103
PkrI GCNGC 3 cut(s) 207, 257, 366
PleI GAGTC 1 cut(s) 43
PpsI GAGTC 1 cut(s) 43
PspN4I GGNNCC 1 cut(s) 278
PspPI GGNCC 2 cut(s) 277, 448
PsuI RGATCY 1 cut(s) 260
PvuII CAGCTG 1 cut(s) 208
RsaI GTAC 2 cut(s) 130, 153
RsaNI GTAC 2 cut(s) 129, 152
RseI CAYNNNNRTG 1 cut(s) 335
SapI GCTCTTC 1 cut(s) 51
SaqAI TTAA 1 cut(s) 243
SatI GCNGC 3 cut(s) 206, 256, 365
Sau3AI GATC 6 cut(s) 226, 260, 293, 398, 421, 548
Sau96I GGNCC 2 cut(s) 277, 448
SchI GAGTC 1 cut(s) 43
ScrFI CCNGG 1 cut(s) 451
SduI GDGCHC 1 cut(s) 253
SetI ASST 7 cut(s) 98, 157, 210, 366, 395, 490, 526
SfcI CTRYAG 1 cut(s) 147
SmiMI CAYNNNNRTG 1 cut(s) 335
Sse9I AATT 4 cut(s) 161, 222, 240, 514
SsiI CCGC 3 cut(s) 134, 253, 407
SspMI CTAG 6 cut(s) 156, 231, 270, 378, 440, 483
StyD4I CCNGG 1 cut(s) 449
StyI CCWWGG 1 cut(s) 155
TaaI ACNGT 2 cut(s) 151, 415
TaiI ACGT 1 cut(s) 490
TasI AATT 4 cut(s) 161, 222, 240, 514
TatI WGTACW 1 cut(s) 128
TfiI GAWTC 1 cut(s) 103
Tru1I TTAA 1 cut(s) 243
Tru9I TTAA 1 cut(s) 243
TscAI CASTG 1 cut(s) 219
TseI GCWGC 3 cut(s) 205, 255, 364
TspRI CASTG 1 cut(s) 219
XapI RAATTY 1 cut(s) 161
XbaI TCTAGA 1 cut(s) 377
XmaJI CCTAGG 1 cut(s) 155
XspI CTAG 6 cut(s) 156, 231, 270, 378, 440, 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.