Rh5CG384600

Involved in the biogenesis of the 60S ribosomal subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0022767
Physical Location & Seq
Reverse (-)
50637768 .. 50638463
696 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG384600.1

Sequence Viewer

Length: 696 bp
ATGCCTGAAATTCTTGATGGGCACAATGTATTTGACTTTGTTGATCCCGATATTTTGGATAGGCTTGAGGAGTTAAAACGAGAAGAAGGAATCATGCAGGCAGATGTGGATGATGATGTGGAGATGGGTGGAATGGAGTTGACTCCAGAAGAGCAGAAGACATTGGCTCAGATAAGGAAAAAGAACAGCTTGCTGATTCAACAACATATAATCAAGAAAAGTACAGCGGAGAGTCGGCCTACAGTACCTAGGAAATTTGACAAGGACAGGGAGTTCACAACAAAGAGAATGGGGAGGCAGCTGTCAGAGTTGGGAATTGATCCTAGTATGGCAATTAACCGAGCCCGCAGCAGATCTCTCTCTAGGAGGGGCCGAAAGAGAGAGCGATCATTTGACAAGGGTGATAGTGAAGGTGGTGGTGTCATGGATATGGATGTGGATACACTCAACAAGAAGCTGCGCTTGATGTCTAGACCCCGTTCAAGGTCAAGATCTAGACCGCCTACTGATGTTGTCCCTGGTGATGGCTTTAAGGACTCTGATCAAAAGTCTAAAGCACTAGACAAGGCCCGGAAATCTGTGAAGAACAGAAACAAGAATGCTAGACGTGGAGAGGCAGACAGAGTTACTCCCAATTTGAAACCTAAGCACTTGTTCTCTGGAAAACGATCAAATGGAAAAACCCAAAGGCGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
MMR_HSR1 NOG1 NOGCT

Protein Analysis

231

Amino Acids

26.45

Weight (kDa)

10.19

Isoelectric Point (pI)

62.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NOGCT PF08155 1 - 18 1.1e-06 NOGCT (NUC087) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022767)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0051921
rosa_multiflora Rmu_co8248217.1_g000001
rosa_samantha Rh5BG359000 Rh5CG384600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 227, 346, 500
AclWI GGATC 2 cut(s) 38, 314
AcsI RAATTY 2 cut(s) 9, 254
AfaI GTAC 2 cut(s) 223, 246
AfiI CCNNNNNNNGG 2 cut(s) 483, 524
AgsI TTSAA 3 cut(s) 200, 483, 640
AjiI CACGTC 1 cut(s) 608
AjnI CCWGG 1 cut(s) 517
AloI GAACNNNNNNTCC 2 cut(s) 257, 289
AluBI AGCT 3 cut(s) 189, 301, 457
AluI AGCT 3 cut(s) 189, 301, 457
AlwI GGATC 2 cut(s) 38, 314
AoxI GGCC 3 cut(s) 236, 370, 567
ApeKI GCWGC 3 cut(s) 298, 348, 457
ApoI RAATTY 2 cut(s) 9, 254
AspA2I CCTAGG 1 cut(s) 248
AspLEI GCGC 2 cut(s) 462, 693
AspS9I GGNCC 2 cut(s) 370, 568
AsuC2I CCSGG 1 cut(s) 571
AsuHPI GGTGA 2 cut(s) 413, 533
AvrII CCTAGG 1 cut(s) 248
BaeGI GKGCMC 1 cut(s) 24
BanII GRGCYC 1 cut(s) 346
BbsI GAAGAC 1 cut(s) 164
BbvI GCAGC 3 cut(s) 310, 360, 444
BccI CCATC 3 cut(s) 11, 118, 518
BciT130I CCWGG 1 cut(s) 519
BciVI GTATCC 1 cut(s) 433
BclI TGATCA 1 cut(s) 541
BcnI CCSGG 1 cut(s) 571
BfaI CTAG 7 cut(s) 249, 324, 363, 471, 495, 560, 603
BfmI CTRYAG 1 cut(s) 240
BfoI RGCGCY 1 cut(s) 694
BfuI GTATCC 1 cut(s) 433
BglII AGATCT 2 cut(s) 353, 491
BisI GCNGC 3 cut(s) 299, 349, 458
BlnI CCTAGG 1 cut(s) 248
BlsI GCNGC 3 cut(s) 300, 350, 459
Bme1390I CCNGG 2 cut(s) 519, 571
BmgBI CACGTC 1 cut(s) 608
BmgT120I GGNCC 2 cut(s) 370, 568
BmiI GGNNCC 1 cut(s) 371
BmrFI CCNGG 2 cut(s) 519, 571
BpiI GAAGAC 1 cut(s) 164
BpmI CTGGAG 1 cut(s) 129
Bpu10I CCTNAGC 1 cut(s) 645
BpuEI CTTGAG 1 cut(s) 86
BpuMI CCSGG 1 cut(s) 571
BsaJI CCNNGG 2 cut(s) 248, 517
Bsc4I CCNNNNNNNGG 2 cut(s) 483, 524
BseBI CCWGG 1 cut(s) 519
BseDI CCNNGG 2 cut(s) 248, 517
BseGI GGATG 2 cut(s) 115, 439
BseLI CCNNNNNNNGG 2 cut(s) 483, 524
BseMII CTCAG 1 cut(s) 182
BseRI GAGGAG 1 cut(s) 83
BseSI GKGCMC 1 cut(s) 24
BseXI GCAGC 3 cut(s) 310, 360, 444
BshFI GGCC 3 cut(s) 238, 372, 569
BsiSI CCGG 1 cut(s) 571
BslFI GGGAC 1 cut(s) 500
BslI CCNNNNNNNGG 2 cut(s) 483, 524
BsmFI GGGAC 1 cut(s) 500
BsmI GAATGC 1 cut(s) 604
BsnI GGCC 3 cut(s) 238, 372, 569
Bsp1286I GDGCHC 2 cut(s) 24, 346
Bsp143I GATC 7 cut(s) 43, 319, 353, 386, 491, 541, 668
BspACI CCGC 3 cut(s) 227, 346, 500
BspANI GGCC 3 cut(s) 238, 372, 569
BspCNI CTCAG 1 cut(s) 181
BspLI GGNNCC 1 cut(s) 371
BspPI GGATC 2 cut(s) 38, 314
BspQI GCTCTTC 1 cut(s) 144
BssECI CCNNGG 2 cut(s) 248, 517
BssMI GATC 7 cut(s) 43, 319, 353, 386, 491, 541, 668
BssT1I CCWWGG 1 cut(s) 248
Bst2UI CCWGG 1 cut(s) 519
Bst4CI ACNGT 1 cut(s) 244
Bst6I CTCTTC 1 cut(s) 144
BstC8I GCNNGC 3 cut(s) 99, 191, 346
BstDEI CTNAG 2 cut(s) 168, 645
BstF5I GGATG 2 cut(s) 115, 439
BstH2I RGCGCY 1 cut(s) 694
BstHHI GCGC 2 cut(s) 462, 693
BstKTI GATC 7 cut(s) 46, 322, 356, 389, 494, 544, 671
BstMBI GATC 7 cut(s) 43, 319, 353, 386, 491, 541, 668
BstNI CCWGG 1 cut(s) 519
BstSCI CCNGG 2 cut(s) 517, 569
BstSFI CTRYAG 1 cut(s) 240
BstSLI GKGCMC 1 cut(s) 24
BstV1I GCAGC 3 cut(s) 310, 360, 444
BstV2I GAAGAC 1 cut(s) 164
BstX2I RGATCY 2 cut(s) 353, 491
BstYI RGATCY 2 cut(s) 353, 491
BsuI GTATCC 1 cut(s) 433
BsuRI GGCC 3 cut(s) 238, 372, 569
BtrI CACGTC 1 cut(s) 608
BtsCI GGATG 2 cut(s) 115, 439
Cac8I GCNNGC 3 cut(s) 99, 191, 346
CfoI GCGC 2 cut(s) 462, 693
Cfr13I GGNCC 2 cut(s) 370, 568
Csp6I GTAC 2 cut(s) 222, 245
CviAII CATG 2 cut(s) 94, 424
CviQI GTAC 2 cut(s) 222, 245
DdeI CTNAG 2 cut(s) 168, 645
DpnI GATC 7 cut(s) 45, 321, 355, 388, 493, 543, 670
DpnII GATC 7 cut(s) 43, 319, 353, 386, 491, 541, 668
Eam1104I CTCTTC 1 cut(s) 144
EarI CTCTTC 1 cut(s) 144
Eco130I CCWWGG 1 cut(s) 248
Eco24I GRGCYC 1 cut(s) 346
EcoRII CCWGG 1 cut(s) 517
EcoT14I CCWWGG 1 cut(s) 248
EcoT38I GRGCYC 1 cut(s) 346
ErhI CCWWGG 1 cut(s) 248
FaeI CATG 2 cut(s) 97, 427
FaiI YATR 6 cut(s) 95, 207, 209, 329, 425, 431
FalI AAGNNNNNCTT 4 cut(s) 173, 205, 446, 478
FaqI GGGAC 1 cut(s) 500
FatI CATG 2 cut(s) 93, 423
FauI CCCGC 1 cut(s) 353
FbaI TGATCA 1 cut(s) 541
Fnu4HI GCNGC 3 cut(s) 299, 349, 458
FokI GGATG 2 cut(s) 122, 446
FriOI GRGCYC 1 cut(s) 346
Fsp4HI GCNGC 3 cut(s) 299, 349, 458
FspBI CTAG 7 cut(s) 249, 324, 363, 471, 495, 560, 603
GlaI GCGC 2 cut(s) 461, 692
GluI GCNGC 3 cut(s) 299, 349, 458
GsuI CTGGAG 1 cut(s) 129
HaeII RGCGCY 1 cut(s) 694
HaeIII GGCC 3 cut(s) 238, 372, 569
HapII CCGG 1 cut(s) 571
HhaI GCGC 2 cut(s) 462, 693
Hin1II CATG 2 cut(s) 97, 427
Hin6I GCGC 2 cut(s) 460, 691
HinP1I GCGC 2 cut(s) 460, 691
HincII GTYRAC 1 cut(s) 141
HindII GTYRAC 1 cut(s) 141
HinfI GANTC 5 cut(s) 90, 142, 196, 232, 536
HpaII CCGG 1 cut(s) 571
HphI GGTGA 2 cut(s) 413, 533
Hpy166II GTNNAC 2 cut(s) 141, 276
Hpy188I TCNGA 3 cut(s) 171, 307, 541
Hpy188III TCNNGA 8 cut(s) 14, 47, 146, 214, 471, 489, 495, 660
Hpy8I GTNNAC 2 cut(s) 141, 276
HpyAV CCTTC 2 cut(s) 80, 404
HpyCH4III ACNGT 1 cut(s) 244
HpyCH4IV ACGT 1 cut(s) 607
HpyCH4V TGCA 1 cut(s) 97
HpyF3I CTNAG 2 cut(s) 168, 645
HpySE526I ACGT 1 cut(s) 607
Hsp92II CATG 2 cut(s) 97, 427
HspAI GCGC 2 cut(s) 460, 691
Ksp22I TGATCA 1 cut(s) 541
Kzo9I GATC 7 cut(s) 43, 319, 353, 386, 491, 541, 668
LguI GCTCTTC 1 cut(s) 144
LpnPI CCDG 8 cut(s) 18, 83, 159, 253, 504, 531, 584, 645
Lsp1109I GCAGC 3 cut(s) 310, 360, 444
MaeI CTAG 7 cut(s) 249, 324, 363, 471, 495, 560, 603
MaeII ACGT 1 cut(s) 607
MaeIII GTNAC 1 cut(s) 625
MalI GATC 7 cut(s) 45, 321, 355, 388, 493, 543, 670
MboI GATC 7 cut(s) 43, 319, 353, 386, 491, 541, 668
MboII GAAGA 4 cut(s) 95, 161, 169, 595
MflI RGATCY 2 cut(s) 353, 491
MhlI GDGCHC 2 cut(s) 24, 346
MluCI AATT 5 cut(s) 9, 254, 315, 333, 634
MlyI GAGTC 3 cut(s) 136, 241, 530
MnlI CCTC 4 cut(s) 61, 288, 360, 607
MseI TTAA 3 cut(s) 74, 336, 531
MslI CAYNNNNRTG 1 cut(s) 428
MspA1I CMGCKG 2 cut(s) 227, 301
MspI CCGG 1 cut(s) 571
MspR9I CCNGG 2 cut(s) 519, 571
Mva1269I GAATGC 1 cut(s) 604
MvaI CCWGG 1 cut(s) 519
NciI CCSGG 1 cut(s) 571
NdeII GATC 7 cut(s) 43, 319, 353, 386, 491, 541, 668
NlaIII CATG 2 cut(s) 97, 427
NlaIV GGNNCC 1 cut(s) 371
PciSI GCTCTTC 1 cut(s) 144
PctI GAATGC 1 cut(s) 604
PfeI GAWTC 2 cut(s) 90, 196
PkrI GCNGC 3 cut(s) 300, 350, 459
PleI GAGTC 3 cut(s) 136, 240, 530
PpsI GAGTC 3 cut(s) 136, 240, 530
Psp6I CCWGG 1 cut(s) 517
PspGI CCWGG 1 cut(s) 517
PspN4I GGNNCC 1 cut(s) 371
PspPI GGNCC 2 cut(s) 370, 568
PsuI RGATCY 2 cut(s) 353, 491
PvuII CAGCTG 1 cut(s) 301
RsaI GTAC 2 cut(s) 223, 246
RsaNI GTAC 2 cut(s) 222, 245
RseI CAYNNNNRTG 1 cut(s) 428
SapI GCTCTTC 1 cut(s) 144
SaqAI TTAA 3 cut(s) 74, 336, 531
SatI GCNGC 3 cut(s) 299, 349, 458
Sau3AI GATC 7 cut(s) 43, 319, 353, 386, 491, 541, 668
Sau96I GGNCC 2 cut(s) 370, 568
SchI GAGTC 3 cut(s) 136, 241, 530
ScrFI CCNGG 2 cut(s) 519, 571
SduI GDGCHC 2 cut(s) 24, 346
SetI ASST 8 cut(s) 191, 250, 303, 415, 459, 488, 610, 646
SfcI CTRYAG 1 cut(s) 240
SmiMI CAYNNNNRTG 1 cut(s) 428
SmlI CTYRAG 1 cut(s) 65
SmoI CTYRAG 1 cut(s) 65
Sse9I AATT 5 cut(s) 9, 254, 315, 333, 634
SsiI CCGC 3 cut(s) 227, 346, 500
SspMI CTAG 7 cut(s) 249, 324, 363, 471, 495, 560, 603
StyD4I CCNGG 2 cut(s) 517, 569
StyI CCWWGG 1 cut(s) 248
TaaI ACNGT 1 cut(s) 244
TaiI ACGT 1 cut(s) 610
TasI AATT 5 cut(s) 9, 254, 315, 333, 634
TatI WGTACW 1 cut(s) 221
TfiI GAWTC 2 cut(s) 90, 196
Tru1I TTAA 3 cut(s) 74, 336, 531
Tru9I TTAA 3 cut(s) 74, 336, 531
TseI GCWGC 3 cut(s) 298, 348, 457
XapI RAATTY 2 cut(s) 9, 254
XbaI TCTAGA 2 cut(s) 470, 494
XmaJI CCTAGG 1 cut(s) 248
XspI CTAG 7 cut(s) 249, 324, 363, 471, 495, 560, 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.