Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8248217.1

Orthogroup ID

OG0022767

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 415

Gene Structure 415 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8248217.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 245 bp

atggaattgattcctgaagtgcagaagacattggctgagataaggaaaaagaaaagcttgcatattcaacgacatagaatcaagaaaagtacggcagagagtcgacctacagtagcaaggaaatttgacaaggacaaggagttcacaacaaagagaatggggaggcagctgttagagttgggaattgatcctagcccggccttgcccaagggcagccttggcgacagcccggggcccaagggaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

MMR_HSR1 NOG1 NOGCT

Protein Analysis

81

Amino Acids

9.1

Weight (kDa)

10.28

Isoelectric Point (pI)

50.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022767)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0051921
rosa_multiflora	Rmu_co8248217.1_g000001
rosa_samantha	Rh5BG359000 Rh5CG384600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	103
AclWI	GGATC	1 cut(s)	182
AcsI	RAATTY	1 cut(s)	122
AcuI	CTGAAG	1 cut(s)	36
AfaI	GTAC	1 cut(s)	91
AgsI	TTSAA	1 cut(s)	68
AloI	GAACNNNNNNTCC	2 cut(s)	125, 157
AluBI	AGCT	2 cut(s)	57, 169
AluI	AGCT	2 cut(s)	57, 169
AlwI	GGATC	1 cut(s)	182
Ama87I	CYCGRG	1 cut(s)	229
AoxI	GGCC	2 cut(s)	198, 233
ApaI	GGGCCC	1 cut(s)	237
ApeKI	GCWGC	2 cut(s)	166, 213
ApoI	RAATTY	1 cut(s)	122
Asp700I	GAANNNNTTC	1 cut(s)	9
AspS9I	GGNCC	2 cut(s)	233, 234
AsuC2I	CCSGG	3 cut(s)	197, 230, 231
AvaI	CYCGRG	1 cut(s)	229
BaeGI	GKGCMC	1 cut(s)	237
BanII	GRGCYC	1 cut(s)	237
BbsI	GAAGAC	1 cut(s)	32
BbvI	GCAGC	2 cut(s)	178, 225
BceAI	ACGGC	1 cut(s)	108
BcnI	CCSGG	3 cut(s)	197, 230, 231
BfaI	CTAG	1 cut(s)	192
BfmI	CTRYAG	1 cut(s)	108
BisI	GCNGC	2 cut(s)	167, 214
BlsI	GCNGC	2 cut(s)	168, 215
Bme1390I	CCNGG	3 cut(s)	197, 230, 231
BmeT110I	CYCGRG	1 cut(s)	229
BmgT120I	GGNCC	2 cut(s)	233, 234
BmiI	GGNNCC	2 cut(s)	234, 235
BmrFI	CCNGG	3 cut(s)	197, 230, 231
BpiI	GAAGAC	1 cut(s)	32
BpuMI	CCSGG	3 cut(s)	197, 230, 231
BsaJI	CCNNGG	5 cut(s)	207, 217, 229, 230, 237
BseDI	CCNNGG	5 cut(s)	207, 217, 229, 230, 237
BseMII	CTCAG	1 cut(s)	27
BseSI	GKGCMC	1 cut(s)	237
BseXI	GCAGC	2 cut(s)	178, 225
BsgI	GTGCAG	1 cut(s)	41
BshFI	GGCC	2 cut(s)	200, 235
BsiHKCI	CYCGRG	1 cut(s)	229
BsiSI	CCGG	2 cut(s)	197, 230
BsnI	GGCC	2 cut(s)	200, 235
BsoBI	CYCGRG	1 cut(s)	229
Bsp120I	GGGCCC	1 cut(s)	233
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp143I	GATC	1 cut(s)	187
BspANI	GGCC	2 cut(s)	200, 235
BspCNI	CTCAG	1 cut(s)	28
BspLI	GGNNCC	2 cut(s)	234, 235
BspPI	GGATC	1 cut(s)	182
BssECI	CCNNGG	5 cut(s)	207, 217, 229, 230, 237
BssMI	GATC	1 cut(s)	187
BssT1I	CCWWGG	3 cut(s)	207, 217, 237
Bst4CI	ACNGT	1 cut(s)	112
BstC8I	GCNNGC	1 cut(s)	59
BstDEI	CTNAG	1 cut(s)	36
BstKTI	GATC	1 cut(s)	190
BstMBI	GATC	1 cut(s)	187
BstMWI	GCNNNNNNNGC	1 cut(s)	219
BstSCI	CCNGG	3 cut(s)	195, 228, 229
BstSFI	CTRYAG	1 cut(s)	108
BstSLI	GKGCMC	1 cut(s)	237
BstV1I	GCAGC	2 cut(s)	178, 225
BstV2I	GAAGAC	1 cut(s)	32
BsuRI	GGCC	2 cut(s)	200, 235
Cac8I	GCNNGC	1 cut(s)	59
Cfr13I	GGNCC	2 cut(s)	233, 234
Cfr9I	CCCGGG	1 cut(s)	229
Csp6I	GTAC	1 cut(s)	90
CviJI	RGCY	8 cut(s)	35, 57, 169, 195, 200, 216, 228, 235
CviKI_1	RGCY	8 cut(s)	35, 57, 169, 195, 200, 216, 228, 235
CviQI	GTAC	1 cut(s)	90
DdeI	CTNAG	1 cut(s)	36
DpnI	GATC	1 cut(s)	189
DpnII	GATC	1 cut(s)	187
Eco130I	CCWWGG	3 cut(s)	207, 217, 237
Eco24I	GRGCYC	1 cut(s)	237
Eco57I	CTGAAG	1 cut(s)	36
Eco88I	CYCGRG	1 cut(s)	229
EcoO109I	RGGNCCY	1 cut(s)	233
EcoT14I	CCWWGG	3 cut(s)	207, 217, 237
EcoT38I	GRGCYC	1 cut(s)	237
ErhI	CCWWGG	3 cut(s)	207, 217, 237
FaiI	YATR	2 cut(s)	63, 75
FalI	AAGNNNNNCTT	2 cut(s)	41, 73
FblI	GTMKAC	1 cut(s)	103
Fnu4HI	GCNGC	2 cut(s)	167, 214
FriOI	GRGCYC	1 cut(s)	237
Fsp4HI	GCNGC	2 cut(s)	167, 214
FspBI	CTAG	1 cut(s)	192
GluI	GCNGC	2 cut(s)	167, 214
HaeIII	GGCC	2 cut(s)	200, 235
HapII	CCGG	2 cut(s)	197, 230
HincII	GTYRAC	1 cut(s)	104
HindII	GTYRAC	1 cut(s)	104
HindIII	AAGCTT	1 cut(s)	55
HinfI	GANTC	3 cut(s)	10, 78, 100
HpaII	CCGG	2 cut(s)	197, 230
Hpy166II	GTNNAC	2 cut(s)	104, 144
Hpy188III	TCNNGA	2 cut(s)	14, 82
Hpy8I	GTNNAC	2 cut(s)	104, 144
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4V	TGCA	2 cut(s)	22, 61
HpyF10VI	GCNNNNNNNGC	1 cut(s)	219
HpyF3I	CTNAG	1 cut(s)	36
Kzo9I	GATC	1 cut(s)	187
LpnPI	CCDG	2 cut(s)	27, 210
Lsp1109I	GCAGC	2 cut(s)	178, 225
MaeI	CTAG	1 cut(s)	192
MalI	GATC	1 cut(s)	189
MboI	GATC	1 cut(s)	187
MboII	GAAGA	1 cut(s)	37
MhlI	GDGCHC	1 cut(s)	237
MluCI	AATT	3 cut(s)	5, 122, 183
MlyI	GAGTC	1 cut(s)	109
MnlI	CCTC	1 cut(s)	156
MroXI	GAANNNNTTC	1 cut(s)	9
MspA1I	CMGCKG	1 cut(s)	169
MspI	CCGG	2 cut(s)	197, 230
MspR9I	CCNGG	3 cut(s)	197, 230, 231
MwoI	GCNNNNNNNGC	1 cut(s)	219
NciI	CCSGG	3 cut(s)	197, 230, 231
NdeII	GATC	1 cut(s)	187
NlaIV	GGNNCC	2 cut(s)	234, 235
PdmI	GAANNNNTTC	1 cut(s)	9
PfeI	GAWTC	2 cut(s)	10, 78
PkrI	GCNGC	2 cut(s)	168, 215
PleI	GAGTC	1 cut(s)	108
PpsI	GAGTC	1 cut(s)	108
PspN4I	GGNNCC	2 cut(s)	234, 235
PspOMI	GGGCCC	1 cut(s)	233
PspPI	GGNCC	2 cut(s)	233, 234
PvuII	CAGCTG	1 cut(s)	169
RsaI	GTAC	1 cut(s)	91
RsaNI	GTAC	1 cut(s)	90
SalI	GTCGAC	1 cut(s)	102
SatI	GCNGC	2 cut(s)	167, 214
Sau3AI	GATC	1 cut(s)	187
Sau96I	GGNCC	2 cut(s)	233, 234
SchI	GAGTC	1 cut(s)	109
ScrFI	CCNGG	3 cut(s)	197, 230, 231
SduI	GDGCHC	1 cut(s)	237
SetI	ASST	3 cut(s)	59, 109, 171
SfcI	CTRYAG	1 cut(s)	108
SmaI	CCCGGG	1 cut(s)	231
Sse9I	AATT	3 cut(s)	5, 122, 183
SspMI	CTAG	1 cut(s)	192
StyD4I	CCNGG	3 cut(s)	195, 228, 229
StyI	CCWWGG	3 cut(s)	207, 217, 237
TaaI	ACNGT	1 cut(s)	112
TaqI	TCGA	1 cut(s)	103
TasI	AATT	3 cut(s)	5, 122, 183
TfiI	GAWTC	2 cut(s)	10, 78
TseI	GCWGC	2 cut(s)	166, 213
TspMI	CCCGGG	1 cut(s)	229
XapI	RAATTY	1 cut(s)	122
XmaI	CCCGGG	1 cut(s)	229
XmiI	GTMKAC	1 cut(s)	103
XmnI	GAANNNNTTC	1 cut(s)	9
XspI	CTAG	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.