RchiOBHm_Chr5g0052311

transcription

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0019022
Physical Location & Seq
Reverse (-)
54068074 .. 54071582
3509 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32972

Sequence Viewer

Length: 279 bp
ATGCTGGGACTTTATATGAGGGCAATAGAGTTGCTGAAAGCTCGAGCATTTGAGGTGGAAGGTTCCTTTTCTAGGTTAGCTGTGAATAATGAAAGTGGAGCAAAAATTGGCTTATCTGGAATTAATTGTTATGGGATTTATAATGGGGTGTGCCCTCCTATTTATGACTACTGTTTGAATCCATACCCCAAAACACTTAATTACCAGCAATATTTGACTGCCAAAGAGTTGAAGAAGCAATCTTGGAGATACCACAGGAAATACAACACTTGGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000077 GO:0000278 GO:0000288 GO:0000289 GO:0000932 GO:0000956 GO:0001701 GO:0001824 GO:0001825 GO:0001829 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006417 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006977 GO:0007049 GO:0007093 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009790 GO:0009792 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010608 GO:0010629 GO:0010646 GO:0010648 GO:0010948 GO:0016070 GO:0016071 GO:0017148 GO:0019222 GO:0019439 GO:0022402 GO:0023051 GO:0023052 GO:0023057 GO:0030014 GO:0030015 GO:0030154 GO:0030330 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031570 GO:0031571 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033143 GO:0033144 GO:0033146 GO:0033147 GO:0033554 GO:0034248 GO:0034249 GO:0034641 GO:0034655 GO:0035556 GO:0035770 GO:0036464 GO:0042770 GO:0043009 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045786 GO:0045787 GO:0045930 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051239 GO:0051246 GO:0051248 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0071156 GO:0071158 GO:0071704 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0080090 GO:0090068 GO:0090304 GO:1901360 GO:1901361 GO:1901575 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902400 GO:1902402 GO:1902403 GO:1902806 GO:1902807 GO:1903047 GO:1990904 GO:2000036 GO:2000045 GO:2000112 GO:2000113 GO:2000134
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
NOT2_3_5 Not3

Protein Analysis

92

Amino Acids

10.74

Weight (kDa)

9.32

Isoelectric Point (pI)

30.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NOT2_3_5_C PF04153 62 - 92 4.8e-08 NOT2/NOT3/NOT5 C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019022)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0052311
rosa_laevigata RLG00000021617
rosa_roxburghii Rroxscaffold_2G00077060 Rroxscaffold_5G00364980 Rroxscaffold_5G00365010
rosa_samantha Rh1BG215100 Rh1DG241100 Rh5BG356500 Rh5DG371700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 141
AfiI CCNNNNNNNGG 1 cut(s) 72
AgsI TTSAA 2 cut(s) 178, 232
AluBI AGCT 2 cut(s) 41, 80
AluI AGCT 2 cut(s) 41, 80
Ama87I CYCGRG 1 cut(s) 42
AseI ATTAAT 1 cut(s) 123
AvaI CYCGRG 1 cut(s) 42
BaeGI GKGCMC 1 cut(s) 155
BfaI CTAG 1 cut(s) 72
BmeT110I CYCGRG 1 cut(s) 42
BmiI GGNNCC 1 cut(s) 64
Bsc4I CCNNNNNNNGG 1 cut(s) 72
BseLI CCNNNNNNNGG 1 cut(s) 72
BseSI GKGCMC 1 cut(s) 155
BseYI CCCAGC 1 cut(s) 4
BsiHKCI CYCGRG 1 cut(s) 42
BslFI GGGAC 1 cut(s) 21
BslI CCNNNNNNNGG 1 cut(s) 72
BsmFI GGGAC 1 cut(s) 21
BsoBI CYCGRG 1 cut(s) 42
Bsp1286I GDGCHC 1 cut(s) 155
BspLI GGNNCC 1 cut(s) 64
Bst4CI ACNGT 1 cut(s) 173
BstENI CCTNNNNNAGG 1 cut(s) 70
BstSLI GKGCMC 1 cut(s) 155
CviJI RGCY 3 cut(s) 41, 80, 111
CviKI_1 RGCY 3 cut(s) 41, 80, 111
Eco88I CYCGRG 1 cut(s) 42
EcoNI CCTNNNNNAGG 1 cut(s) 70
FaiI YATR 6 cut(s) 15, 17, 132, 141, 165, 184
FaqI GGGAC 1 cut(s) 21
FspBI CTAG 1 cut(s) 72
GsaI CCCAGC 1 cut(s) 8
HinfI GANTC 1 cut(s) 178
Hpy188III TCNNGA 1 cut(s) 117
HpyAV CCTTC 1 cut(s) 53
HpyCH4III ACNGT 1 cut(s) 173
LmnI GCTCC 1 cut(s) 98
LpnPI CCDG 3 cut(s) 102, 218, 241
MaeI CTAG 1 cut(s) 72
MboII GAAGA 1 cut(s) 244
MhlI GDGCHC 1 cut(s) 155
MluCI AATT 4 cut(s) 105, 120, 124, 199
MnlI CCTC 3 cut(s) 12, 46, 165
MseI TTAA 3 cut(s) 123, 198, 277
NlaIV GGNNCC 1 cut(s) 64
PaeR7I CTCGAG 1 cut(s) 42
PfeI GAWTC 1 cut(s) 178
PshBI ATTAAT 1 cut(s) 123
PsiI TTATAA 1 cut(s) 141
PspFI CCCAGC 1 cut(s) 4
PspN4I GGNNCC 1 cut(s) 64
PspXI VCTCGAGB 1 cut(s) 42
SaqAI TTAA 3 cut(s) 123, 198, 277
SduI GDGCHC 1 cut(s) 155
SetI ASST 5 cut(s) 43, 57, 64, 77, 82
Sfr274I CTCGAG 1 cut(s) 42
SgeI CNNG 8 cut(s) 17, 54, 56, 84, 129, 217, 255, 268
SlaI CTCGAG 1 cut(s) 42
SmlI CTYRAG 1 cut(s) 42
SmoI CTYRAG 1 cut(s) 42
Sse9I AATT 4 cut(s) 105, 120, 124, 199
SspI AATATT 1 cut(s) 212
SspMI CTAG 1 cut(s) 72
TaaI ACNGT 1 cut(s) 173
TaqI TCGA 1 cut(s) 43
TasI AATT 4 cut(s) 105, 120, 124, 199
TfiI GAWTC 1 cut(s) 178
Tru1I TTAA 3 cut(s) 123, 198, 277
Tru9I TTAA 3 cut(s) 123, 198, 277
TspDTI ATGAA 1 cut(s) 105
VspI ATTAAT 1 cut(s) 123
XagI CCTNNNNNAGG 1 cut(s) 70
XhoI CTCGAG 1 cut(s) 42
XspI CTAG 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.