Rh5BG356500

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Forward (+)
55386181 .. 55397203
11023 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG356500.1

Sequence Viewer

Length: 432 bp
ATGGTGATGTTGCTTCGTTGTTTCACTTTTGTTGCCAGTTTCATTGGTTGTACATCTTGGAAAACAGGATTAACTCGGGATGAGGCTAAAATGCTGGGACTTTATATGAGGGCAATAGAGTTGCTGAAAGCTCGAGCATTTGAGGTGGAAGGTTCCTTTTCTAGGTTAGCTGTGAATAATGAAAGTGGAGCAAAAATTGGCTTATCTGGAATTAATTGTTATGGGATTTATAATGGGGTGTGCCCTCCTATTTATGACTACTGTTTGAATCCATACCCCAAGTATGTCCAGCCGTTTGGTGCACATGAGGGATTAATAATTGCACCGATGGTATACACTATACAGGGTGAAGATTTCAAGAGGAAGAAGAAAACACTTCAAGAATTTGTGCGTCCACCCTCTCAGTTAAAAAATGGTGTTTCTCACCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

16.02

Weight (kDa)

9.13

Isoelectric Point (pI)

35.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0019022)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 231
AccI GTMKAC 1 cut(s) 333
AcsI RAATTY 1 cut(s) 383
AfaI GTAC 1 cut(s) 52
AfiI CCNNNNNNNGG 1 cut(s) 162
AgsI TTSAA 3 cut(s) 268, 358, 380
AluBI AGCT 2 cut(s) 131, 170
AluI AGCT 2 cut(s) 131, 170
Alw21I GWGCWC 1 cut(s) 304
Alw44I GTGCAC 1 cut(s) 300
Ama87I CYCGRG 2 cut(s) 75, 132
ApaLI GTGCAC 1 cut(s) 300
ApoI RAATTY 1 cut(s) 383
AseI ATTAAT 2 cut(s) 213, 314
AsuHPI GGTGA 3 cut(s) 16, 359, 416
AvaI CYCGRG 2 cut(s) 75, 132
BaeGI GKGCMC 2 cut(s) 245, 304
Bbv12I GWGCWC 1 cut(s) 304
BccI CCATC 1 cut(s) 322
BceAI ACGGC 1 cut(s) 277
BfaI CTAG 1 cut(s) 162
BmeT110I CYCGRG 2 cut(s) 75, 132
BmiI GGNNCC 1 cut(s) 154
Bsc4I CCNNNNNNNGG 1 cut(s) 162
Bse1I ACTGG 1 cut(s) 36
BseGI GGATG 1 cut(s) 85
BseLI CCNNNNNNNGG 1 cut(s) 162
BseMII CTCAG 1 cut(s) 416
BseNI ACTGG 1 cut(s) 36
BseSI GKGCMC 2 cut(s) 245, 304
BseYI CCCAGC 1 cut(s) 94
BsiHKAI GWGCWC 1 cut(s) 304
BsiHKCI CYCGRG 2 cut(s) 75, 132
BslFI GGGAC 1 cut(s) 111
BslI CCNNNNNNNGG 1 cut(s) 162
BsmFI GGGAC 1 cut(s) 111
BsoBI CYCGRG 2 cut(s) 75, 132
Bsp1286I GDGCHC 2 cut(s) 245, 304
Bsp1407I TGTACA 1 cut(s) 50
BspCNI CTCAG 1 cut(s) 415
BspLI GGNNCC 1 cut(s) 154
BsrGI TGTACA 1 cut(s) 50
BsrI ACTGG 1 cut(s) 36
BssNAI GTATAC 1 cut(s) 334
Bst1107I GTATAC 1 cut(s) 334
Bst4CI ACNGT 1 cut(s) 263
BstAUI TGTACA 1 cut(s) 50
BstDEI CTNAG 1 cut(s) 402
BstENI CCTNNNNNAGG 1 cut(s) 160
BstF5I GGATG 1 cut(s) 85
BstSLI GKGCMC 2 cut(s) 245, 304
BstXI CCANNNNNNTGG 1 cut(s) 296
BstZ17I GTATAC 1 cut(s) 334
BtsCI GGATG 1 cut(s) 85
CseI GACGC 1 cut(s) 380
Csp6I GTAC 1 cut(s) 51
CviAII CATG 1 cut(s) 305
CviJI RGCY 5 cut(s) 86, 131, 170, 201, 292
CviKI_1 RGCY 5 cut(s) 86, 131, 170, 201, 292
CviQI GTAC 1 cut(s) 51
DdeI CTNAG 1 cut(s) 402
Eco88I CYCGRG 2 cut(s) 75, 132
EcoNI CCTNNNNNAGG 1 cut(s) 160
FaeI CATG 1 cut(s) 308
FaqI GGGAC 1 cut(s) 111
FatI CATG 1 cut(s) 304
FblI GTMKAC 1 cut(s) 333
FokI GGATG 1 cut(s) 92
FspBI CTAG 1 cut(s) 162
GsaI CCCAGC 1 cut(s) 98
HgaI GACGC 1 cut(s) 380
Hin1II CATG 1 cut(s) 308
HinfI GANTC 1 cut(s) 268
HphI GGTGA 3 cut(s) 16, 359, 416
Hpy166II GTNNAC 3 cut(s) 302, 334, 395
Hpy188III TCNNGA 4 cut(s) 77, 207, 358, 380
Hpy8I GTNNAC 3 cut(s) 302, 334, 395
HpyAV CCTTC 1 cut(s) 143
HpyCH4III ACNGT 1 cut(s) 263
HpyCH4V TGCA 2 cut(s) 302, 323
HpyF3I CTNAG 1 cut(s) 402
Hsp92II CATG 1 cut(s) 308
LmnI GCTCC 1 cut(s) 188
LpnPI CCDG 6 cut(s) 49, 51, 80, 192, 302, 329
MaeI CTAG 1 cut(s) 162
MboII GAAGA 3 cut(s) 362, 376, 379
MhlI GDGCHC 2 cut(s) 245, 304
MluCI AATT 5 cut(s) 195, 210, 214, 318, 383
MnlI CCTC 7 cut(s) 76, 102, 136, 255, 301, 354, 409
MseI TTAA 4 cut(s) 71, 213, 314, 407
NlaIII CATG 1 cut(s) 308
NlaIV GGNNCC 1 cut(s) 154
PaeR7I CTCGAG 1 cut(s) 132
PfeI GAWTC 1 cut(s) 268
PshBI ATTAAT 2 cut(s) 213, 314
PsiI TTATAA 1 cut(s) 231
PspFI CCCAGC 1 cut(s) 94
PspN4I GGNNCC 1 cut(s) 154
PspXI VCTCGAGB 1 cut(s) 132
RsaI GTAC 1 cut(s) 52
RsaNI GTAC 1 cut(s) 51
SaqAI TTAA 4 cut(s) 71, 213, 314, 407
SduI GDGCHC 2 cut(s) 245, 304
SetI ASST 5 cut(s) 133, 147, 154, 167, 172
Sfr274I CTCGAG 1 cut(s) 132
SlaI CTCGAG 1 cut(s) 132
SmlI CTYRAG 1 cut(s) 132
SmoI CTYRAG 1 cut(s) 132
Sse9I AATT 5 cut(s) 195, 210, 214, 318, 383
SspMI CTAG 1 cut(s) 162
TaaI ACNGT 1 cut(s) 263
TaqI TCGA 1 cut(s) 133
TasI AATT 5 cut(s) 195, 210, 214, 318, 383
TatI WGTACW 1 cut(s) 50
TfiI GAWTC 1 cut(s) 268
Tru1I TTAA 4 cut(s) 71, 213, 314, 407
Tru9I TTAA 4 cut(s) 71, 213, 314, 407
TspDTI ATGAA 2 cut(s) 31, 195
VneI GTGCAC 1 cut(s) 300
VspI ATTAAT 2 cut(s) 213, 314
XagI CCTNNNNNAGG 1 cut(s) 160
XapI RAATTY 1 cut(s) 383
XhoI CTCGAG 1 cut(s) 132
XmiI GTMKAC 1 cut(s) 333
XspI CTAG 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.