Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0022405

Physical Location & Seq

Genomic Coordinates Forward (+)

61380761 .. 61381109

Gene Structure 349 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33425

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGTGCCATGCTAATTGGGTTATGCACAGGGATTTGAAGCCTGAGAAGTCTCGGTGTTTTTTAAGCCTGGTATGTTTCTGGAACACCGTTGGTTTTGGGGAAAAGTTTATGGAGATCATGGGGAGTCCGTTCTACATGGCACCGGAGGTTTTGAAGAGGAATTATGGACTGGAGGTTGATATATGGAGCGCCAGAGTCATTCTATACATTTTGTTATGTGGGATTCCTCCATTTTGGGCAGGTATTTTAGAAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009555 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010152 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0021700 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048229 GO:0048518 GO:0048583 GO:0048584 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0080134 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701 GO:1902584 GO:2000070

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 Pkinase

Protein Analysis

85

Amino Acids

9.93

Weight (kDa)

6.7

Isoelectric Point (pI)

54.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	2 - 79	2.2e-14	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022405)

Species	Orthologous Gene IDs
malus_domestica	MD12G1073100.v1.1
rosa_chinensis	RchiOBHm_Chr5g0057481
rosa_multiflora	Rmu_sc0004359.1_g000034
rosa_rugosa	Rorug03G0119800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	230
AccB1I	GGYRCC	1 cut(s)	139
AgsI	TTSAA	2 cut(s)	37, 154
AjnI	CCWGG	1 cut(s)	66
Alw26I	GTCTC	1 cut(s)	54
AspLEI	GCGC	1 cut(s)	191
BanI	GGYRCC	1 cut(s)	139
BciT130I	CCWGG	1 cut(s)	68
BcoDI	GTCTC	1 cut(s)	54
BfaI	CTAG	1 cut(s)	256
BfoI	RGCGCY	1 cut(s)	192
BfuAI	ACCTGC	1 cut(s)	230
Bme1390I	CCNGG	1 cut(s)	68
BmiI	GGNNCC	1 cut(s)	141
BmrFI	CCNGG	1 cut(s)	68
BpmI	CTGGAG	1 cut(s)	191
BsaWI	WCCGGW	1 cut(s)	142
Bse1I	ACTGG	1 cut(s)	174
BseBI	CCWGG	1 cut(s)	68
BseMII	CTCAG	1 cut(s)	33
BseNI	ACTGG	1 cut(s)	174
BshNI	GGYRCC	1 cut(s)	139
BsiSI	CCGG	1 cut(s)	143
BsmAI	GTCTC	1 cut(s)	54
Bsp143I	GATC	1 cut(s)	114
BspCNI	CTCAG	1 cut(s)	34
BspLI	GGNNCC	1 cut(s)	141
BspMI	ACCTGC	1 cut(s)	230
BspT107I	GGYRCC	1 cut(s)	139
BsrI	ACTGG	1 cut(s)	174
BssMI	GATC	1 cut(s)	114
Bst2UI	CCWGG	1 cut(s)	68
Bst4CI	ACNGT	1 cut(s)	88
Bst6I	CTCTTC	1 cut(s)	149
BstDEI	CTNAG	1 cut(s)	42
BstH2I	RGCGCY	1 cut(s)	192
BstHHI	GCGC	1 cut(s)	191
BstKTI	GATC	1 cut(s)	117
BstMAI	GTCTC	1 cut(s)	54
BstMBI	GATC	1 cut(s)	114
BstNI	CCWGG	1 cut(s)	68
BstSCI	CCNGG	1 cut(s)	66
BveI	ACCTGC	1 cut(s)	230
CfoI	GCGC	1 cut(s)	191
CviAII	CATG	3 cut(s)	8, 118, 136
CviJI	RGCY	2 cut(s)	40, 66
CviKI_1	RGCY	2 cut(s)	40, 66
DdeI	CTNAG	1 cut(s)	42
DpnI	GATC	1 cut(s)	116
DpnII	GATC	1 cut(s)	114
Eam1104I	CTCTTC	1 cut(s)	149
EarI	CTCTTC	1 cut(s)	149
EcoRII	CCWGG	1 cut(s)	66
FaeI	CATG	3 cut(s)	11, 121, 139
FatI	CATG	3 cut(s)	7, 117, 135
FspBI	CTAG	1 cut(s)	256
GlaI	GCGC	1 cut(s)	190
GsuI	CTGGAG	1 cut(s)	191
HaeII	RGCGCY	1 cut(s)	192
HapII	CCGG	1 cut(s)	143
HhaI	GCGC	1 cut(s)	191
Hin1II	CATG	3 cut(s)	11, 121, 139
Hin6I	GCGC	1 cut(s)	189
HinP1I	GCGC	1 cut(s)	189
HinfI	GANTC	3 cut(s)	124, 195, 223
HpaII	CCGG	1 cut(s)	143
Hpy188III	TCNNGA	1 cut(s)	79
HpyCH4III	ACNGT	1 cut(s)	88
HpyCH4V	TGCA	1 cut(s)	25
HpyF3I	CTNAG	1 cut(s)	42
Hsp92II	CATG	3 cut(s)	11, 121, 139
HspAI	GCGC	1 cut(s)	189
Kzo9I	GATC	1 cut(s)	114
LmnI	GCTCC	1 cut(s)	186
LpnPI	CCDG	9 cut(s)	13, 53, 54, 64, 80, 155, 156, 205, 225
MaeI	CTAG	1 cut(s)	256
MalI	GATC	1 cut(s)	116
MboI	GATC	1 cut(s)	114
MboII	GAAGA	1 cut(s)	166
MluCI	AATT	2 cut(s)	13, 160
MlyI	GAGTC	2 cut(s)	133, 204
MnlI	CCTC	4 cut(s)	139, 150, 166, 237
MseI	TTAA	1 cut(s)	62
MspI	CCGG	1 cut(s)	143
MspR9I	CCNGG	1 cut(s)	68
MvaI	CCWGG	1 cut(s)	68
NdeII	GATC	1 cut(s)	114
NlaIII	CATG	3 cut(s)	11, 121, 139
NlaIV	GGNNCC	1 cut(s)	141
PfeI	GAWTC	1 cut(s)	223
PleI	GAGTC	2 cut(s)	132, 203
PpsI	GAGTC	2 cut(s)	132, 203
Psp6I	CCWGG	1 cut(s)	66
PspGI	CCWGG	1 cut(s)	66
PspN4I	GGNNCC	1 cut(s)	141
SaqAI	TTAA	1 cut(s)	62
Sau3AI	GATC	1 cut(s)	114
SchI	GAGTC	2 cut(s)	133, 204
ScrFI	CCNGG	1 cut(s)	68
SetI	ASST	3 cut(s)	150, 177, 244
Sse9I	AATT	2 cut(s)	13, 160
SspMI	CTAG	1 cut(s)	256
StyD4I	CCNGG	1 cut(s)	66
TaaI	ACNGT	1 cut(s)	88
TasI	AATT	2 cut(s)	13, 160
TfiI	GAWTC	1 cut(s)	223
Tru1I	TTAA	1 cut(s)	62
Tru9I	TTAA	1 cut(s)	62
TspGWI	ACGGA	1 cut(s)	117
XspI	CTAG	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.