Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0022405

Physical Location & Seq

Genomic Coordinates Forward (+)

9668611 .. 9669033

Gene Structure 423 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0119800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGCAGCTCGGTGTTGTTGTGCGAAATGATAATGGAGTTCTTGTTGATGGTGCATCTCATCATTGCCGGTCAAATTCGGCAATTGAAGCTGAAGGAAAAGCTGCCATCCTTGCCCTCTCTCTTGCCCAGAAGTACACTCATCTCCCTATACAGATCGAATCGGACTGCCAAGAGCTAGTAAAAGACATCAACGGTATCGATTCTGGTCGAATTCGAGCAGCTCCTCCCCCATGCAGGCTATTCTCATGGTCGTGGATTTCCAGAAAAGCAAACTGCGCAGCCCACCATATTGCGTCGCTTAGTGTGAGGAAGACGTGCCCGGATGTCTGGATTGACAGGCCGCCGTCTTCCCTGGTCCATGTTCTCTCACGCGATGGATTACCTTGTCCTCCGCCGGCGTCAATGGCTGGGGGGAGACCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009555 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010152 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0021700 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048229 GO:0048518 GO:0048583 GO:0048584 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0080134 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701 GO:1902584 GO:2000070

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 Pkinase

Protein Analysis

140

Amino Acids

15.05

Weight (kDa)

8.63

Isoelectric Point (pI)

44.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	3 - 98	2.5e-12	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022405)

Species	Orthologous Gene IDs
malus_domestica	MD12G1073100.v1.1
rosa_chinensis	RchiOBHm_Chr5g0057481
rosa_multiflora	Rmu_sc0004359.1_g000034
rosa_rugosa	Rorug03G0119800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	277
AccII	CGCG	1 cut(s)	372
AciI	CCGC	2 cut(s)	341, 392
AcsI	RAATTY	2 cut(s)	73, 210
AcuI	CTGAAG	1 cut(s)	111
AcyI	GRCGYC	1 cut(s)	398
AfaI	GTAC	1 cut(s)	134
AfiI	CCNNNNNNNGG	1 cut(s)	234
AgsI	TTSAA	1 cut(s)	86
AjiI	CACGTC	1 cut(s)	315
AjnI	CCWGG	1 cut(s)	351
AluBI	AGCT	5 cut(s)	7, 89, 101, 175, 221
AluI	AGCT	5 cut(s)	7, 89, 101, 175, 221
Alw26I	GTCTC	1 cut(s)	409
AoxI	GGCC	1 cut(s)	338
ApeKI	GCWGC	4 cut(s)	4, 101, 218, 278
ApoI	RAATTY	2 cut(s)	73, 210
AspLEI	GCGC	1 cut(s)	278
AspS9I	GGNCC	1 cut(s)	355
AsuC2I	CCSGG	1 cut(s)	320
AvaII	GGWCC	1 cut(s)	355
BaeGI	GKGCMC	1 cut(s)	320
BbsI	GAAGAC	2 cut(s)	317, 339
BbvI	GCAGC	4 cut(s)	16, 88, 230, 290
BccI	CCATC	3 cut(s)	41, 113, 368
BceAI	ACGGC	1 cut(s)	328
BciT130I	CCWGG	1 cut(s)	353
BcnI	CCSGG	1 cut(s)	320
BcoDI	GTCTC	1 cut(s)	409
BfaI	CTAG	1 cut(s)	176
BisI	GCNGC	5 cut(s)	5, 102, 219, 279, 341
BlsI	GCNGC	5 cut(s)	6, 103, 220, 280, 342
Bme1390I	CCNGG	2 cut(s)	320, 353
Bme18I	GGWCC	1 cut(s)	355
BmgBI	CACGTC	1 cut(s)	315
BmgT120I	GGNCC	1 cut(s)	355
BmrFI	CCNGG	2 cut(s)	320, 353
BmsI	GCATC	1 cut(s)	62
BpiI	GAAGAC	2 cut(s)	317, 339
BpuMI	CCSGG	1 cut(s)	320
Bsa29I	ATCGAT	1 cut(s)	198
BsaHI	GRCGYC	1 cut(s)	398
BsaI	GGTCTC	1 cut(s)	409
BsaJI	CCNNGG	1 cut(s)	351
BsaXI	ACNNNNNCTCC	2 cut(s)	27, 57
Bsc4I	CCNNNNNNNGG	1 cut(s)	234
Bse118I	RCCGGY	2 cut(s)	66, 394
Bse3DI	GCAATG	1 cut(s)	61
BseBI	CCWGG	1 cut(s)	353
BseCI	ATCGAT	1 cut(s)	198
BseDI	CCNNGG	1 cut(s)	351
BseGI	GGATG	2 cut(s)	105, 328
BseLI	CCNNNNNNNGG	1 cut(s)	234
BseMI	GCAATG	1 cut(s)	61
BseRI	GAGGAG	1 cut(s)	213
BseSI	GKGCMC	1 cut(s)	320
BseXI	GCAGC	4 cut(s)	16, 88, 230, 290
BseYI	CCCAGC	1 cut(s)	407
Bsh1236I	CGCG	1 cut(s)	372
BshFI	GGCC	1 cut(s)	340
BshVI	ATCGAT	1 cut(s)	198
BsiSI	CCGG	3 cut(s)	67, 320, 395
BslI	CCNNNNNNNGG	1 cut(s)	234
BsmAI	GTCTC	1 cut(s)	409
BsnI	GGCC	1 cut(s)	340
Bso31I	GGTCTC	1 cut(s)	409
Bsp1286I	GDGCHC	1 cut(s)	320
Bsp143I	GATC	1 cut(s)	153
BspACI	CCGC	2 cut(s)	341, 392
BspANI	GGCC	1 cut(s)	340
BspDI	ATCGAT	1 cut(s)	198
BspFNI	CGCG	1 cut(s)	372
BspTNI	GGTCTC	1 cut(s)	409
BsrDI	GCAATG	1 cut(s)	61
BsrFI	RCCGGY	2 cut(s)	66, 394
BssAI	RCCGGY	2 cut(s)	66, 394
BssECI	CCNNGG	1 cut(s)	351
BssMI	GATC	1 cut(s)	153
BssNI	GRCGYC	1 cut(s)	398
Bst2UI	CCWGG	1 cut(s)	353
Bst4CI	ACNGT	2 cut(s)	194, 420
BstACI	GRCGYC	1 cut(s)	398
BstC8I	GCNNGC	2 cut(s)	236, 396
BstDEI	CTNAG	1 cut(s)	299
BstF5I	GGATG	2 cut(s)	105, 328
BstFNI	CGCG	1 cut(s)	372
BstHHI	GCGC	1 cut(s)	278
BstKTI	GATC	1 cut(s)	156
BstMAI	GTCTC	1 cut(s)	409
BstMBI	GATC	1 cut(s)	153
BstMWI	GCNNNNNNNGC	4 cut(s)	86, 110, 275, 404
BstNI	CCWGG	1 cut(s)	353
BstSCI	CCNGG	2 cut(s)	318, 351
BstSLI	GKGCMC	1 cut(s)	320
BstUI	CGCG	1 cut(s)	372
BstV1I	GCAGC	4 cut(s)	16, 88, 230, 290
BstV2I	GAAGAC	2 cut(s)	317, 339
Bsu15I	ATCGAT	1 cut(s)	198
BsuRI	GGCC	1 cut(s)	340
BsuTUI	ATCGAT	1 cut(s)	198
BtgZI	GCGATG	1 cut(s)	387
BtrI	CACGTC	1 cut(s)	315
BtsCI	GGATG	2 cut(s)	105, 328
Cac8I	GCNNGC	2 cut(s)	236, 396
CfoI	GCGC	1 cut(s)	278
Cfr10I	RCCGGY	2 cut(s)	66, 394
Cfr13I	GGNCC	1 cut(s)	355
ClaI	ATCGAT	1 cut(s)	198
CseI	GACGC	2 cut(s)	282, 387
Csp6I	GTAC	1 cut(s)	133
CviAII	CATG	3 cut(s)	231, 246, 359
CviJI	RGCY	9 cut(s)	7, 89, 101, 175, 221, 238, 281, 340, 407
CviKI_1	RGCY	9 cut(s)	7, 89, 101, 175, 221, 238, 281, 340, 407
CviQI	GTAC	1 cut(s)	133
DdeI	CTNAG	1 cut(s)	299
DpnI	GATC	1 cut(s)	155
DpnII	GATC	1 cut(s)	153
EciI	GGCGGA	1 cut(s)	381
Eco31I	GGTCTC	1 cut(s)	409
Eco47I	GGWCC	1 cut(s)	355
Eco57I	CTGAAG	1 cut(s)	111
EcoRI	GAATTC	1 cut(s)	210
EcoRII	CCWGG	1 cut(s)	351
FaeI	CATG	3 cut(s)	234, 249, 362
FaiI	YATR	5 cut(s)	149, 232, 247, 288, 360
FatI	CATG	3 cut(s)	230, 245, 358
Fnu4HI	GCNGC	5 cut(s)	5, 102, 219, 279, 341
FokI	GGATG	2 cut(s)	92, 335
Fsp4HI	GCNGC	5 cut(s)	5, 102, 219, 279, 341
FspBI	CTAG	1 cut(s)	176
FspI	TGCGCA	1 cut(s)	277
GlaI	GCGC	1 cut(s)	277
GluI	GCNGC	5 cut(s)	5, 102, 219, 279, 341
GsaI	CCCAGC	1 cut(s)	411
HaeIII	GGCC	1 cut(s)	340
HapII	CCGG	3 cut(s)	67, 320, 395
HgaI	GACGC	2 cut(s)	282, 387
HhaI	GCGC	1 cut(s)	278
Hin1I	GRCGYC	1 cut(s)	398
Hin1II	CATG	3 cut(s)	234, 249, 362
Hin6I	GCGC	1 cut(s)	276
HinP1I	GCGC	1 cut(s)	276
HinfI	GANTC	2 cut(s)	158, 200
HpaII	CCGG	3 cut(s)	67, 320, 395
Hpy166II	GTNNAC	1 cut(s)	135
Hpy188I	TCNGA	1 cut(s)	163
Hpy188III	TCNNGA	2 cut(s)	261, 328
Hpy8I	GTNNAC	1 cut(s)	135
Hpy99I	CGWCG	1 cut(s)	298
HpyAV	CCTTC	1 cut(s)	86
HpyCH4III	ACNGT	2 cut(s)	194, 420
HpyCH4IV	ACGT	1 cut(s)	314
HpyCH4V	TGCA	3 cut(s)	4, 53, 234
HpyF10VI	GCNNNNNNNGC	4 cut(s)	86, 110, 275, 404
HpyF3I	CTNAG	1 cut(s)	299
HpySE526I	ACGT	1 cut(s)	314
Hsp92I	GRCGYC	1 cut(s)	398
Hsp92II	CATG	3 cut(s)	234, 249, 362
HspAI	GCGC	1 cut(s)	276
KroI	GCCGGC	1 cut(s)	394
KroNI	GCCGGC	1 cut(s)	396
Kzo9I	GATC	1 cut(s)	153
LmnI	GCTCC	1 cut(s)	226
Lsp1109I	GCAGC	4 cut(s)	16, 88, 230, 290
LweI	GCATC	1 cut(s)	62
MaeI	CTAG	1 cut(s)	176
MaeII	ACGT	1 cut(s)	314
MalI	GATC	1 cut(s)	155
MboI	GATC	1 cut(s)	153
MboII	GAAGA	2 cut(s)	322, 339
MfeI	CAATTG	1 cut(s)	81
MhlI	GDGCHC	1 cut(s)	320
MluCI	AATT	3 cut(s)	73, 81, 210
MnlI	CCTC	4 cut(s)	125, 234, 300, 399
MreI	CGCCGGCG	1 cut(s)	394
MroNI	GCCGGC	1 cut(s)	394
MslI	CAYNNNNRTG	1 cut(s)	250
MspI	CCGG	3 cut(s)	67, 320, 395
MspR9I	CCNGG	2 cut(s)	320, 353
MunI	CAATTG	1 cut(s)	81
MvaI	CCWGG	1 cut(s)	353
MvnI	CGCG	1 cut(s)	372
MwoI	GCNNNNNNNGC	4 cut(s)	86, 110, 275, 404
NaeI	GCCGGC	1 cut(s)	396
NciI	CCSGG	1 cut(s)	320
NdeII	GATC	1 cut(s)	153
NgoMIV	GCCGGC	1 cut(s)	394
NlaIII	CATG	3 cut(s)	234, 249, 362
NsbI	TGCGCA	1 cut(s)	277
PdiI	GCCGGC	1 cut(s)	396
PfeI	GAWTC	2 cut(s)	158, 200
PkrI	GCNGC	5 cut(s)	6, 103, 220, 280, 342
Psp6I	CCWGG	1 cut(s)	351
PspFI	CCCAGC	1 cut(s)	407
PspGI	CCWGG	1 cut(s)	351
PspPI	GGNCC	1 cut(s)	355
RsaI	GTAC	1 cut(s)	134
RsaNI	GTAC	1 cut(s)	133
RseI	CAYNNNNRTG	1 cut(s)	250
SatI	GCNGC	5 cut(s)	5, 102, 219, 279, 341
Sau3AI	GATC	1 cut(s)	153
Sau96I	GGNCC	1 cut(s)	355
ScrFI	CCNGG	2 cut(s)	320, 353
SduI	GDGCHC	1 cut(s)	320
SetI	ASST	7 cut(s)	9, 91, 103, 177, 223, 317, 385
SfaNI	GCATC	1 cut(s)	62
SgrAI	CRCCGGYG	1 cut(s)	394
SinI	GGWCC	1 cut(s)	355
SmiMI	CAYNNNNRTG	1 cut(s)	250
Sse9I	AATT	3 cut(s)	73, 81, 210
SsiI	CCGC	2 cut(s)	341, 392
SspMI	CTAG	1 cut(s)	176
StyD4I	CCNGG	2 cut(s)	318, 351
TaaI	ACNGT	2 cut(s)	194, 420
TaiI	ACGT	1 cut(s)	317
TaqI	TCGA	4 cut(s)	156, 198, 208, 214
TasI	AATT	3 cut(s)	73, 81, 210
TatI	WGTACW	1 cut(s)	132
TauI	GCSGC	1 cut(s)	343
TfiI	GAWTC	2 cut(s)	158, 200
TseI	GCWGC	4 cut(s)	4, 101, 218, 278
VpaK11BI	GGWCC	1 cut(s)	355
XapI	RAATTY	2 cut(s)	73, 210
XspI	CTAG	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.