Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004359.1

Orthogroup ID

OG0022405

Physical Location & Seq

Genomic Coordinates Reverse (-)

125970 .. 126627

Gene Structure 658 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004359.1_g000034.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

atgtttaaaacgacgacatatgagagaatcgtcagagacccagaaaccaccatccttcgccgtcttccgcaaaagattgaaaatcgaagaatctcgatgatgtttgcttctacctttcaaatcgaaaaccgaactccaaggaatcttgaacgagctgcggtgaacgtggctaggactgtggctgaggtggtgaggatgtgccatgctaattggattatgcacaggtatttgaagccggagaagtctcgatgggagaagtttatggagatcgcggggagtccgttctacatggcaccagaggttttgaagaggaattatggaccagaggttgatatatggagcgtcggagtcattctatacattttgttatgtggggttcctccattttgggcaggtatttcagaaatctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009555 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010152 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0021700 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048229 GO:0048518 GO:0048583 GO:0048584 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0080134 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701 GO:1902584 GO:2000070

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 Pkinase

Protein Analysis

136

Amino Acids

16.02

Weight (kDa)

9.64

Isoelectric Point (pI)

65.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022405)

Species	Orthologous Gene IDs
malus_domestica	MD12G1073100.v1.1
rosa_chinensis	RchiOBHm_Chr5g0057481
rosa_multiflora	Rmu_sc0004359.1_g000034
rosa_rugosa	Rorug03G0119800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	383
AccB1I	GGYRCC	1 cut(s)	292
AccII	CGCG	1 cut(s)	272
AciI	CCGC	3 cut(s)	68, 158, 272
AgsI	TTSAA	5 cut(s)	80, 119, 149, 232, 307
AluBI	AGCT	1 cut(s)	155
AluI	AGCT	1 cut(s)	155
Alw26I	GTCTC	2 cut(s)	30, 249
ApeKI	GCWGC	1 cut(s)	155
AspS9I	GGNCC	1 cut(s)	320
AsuHPI	GGTGA	2 cut(s)	172, 202
AvaII	GGWCC	1 cut(s)	320
BanI	GGYRCC	1 cut(s)	292
BbsI	GAAGAC	1 cut(s)	56
BbvCI	CCTCAGC	1 cut(s)	183
BbvI	GCAGC	1 cut(s)	142
BccI	CCATC	2 cut(s)	59, 243
BceAI	ACGGC	1 cut(s)	45
BcoDI	GTCTC	2 cut(s)	30, 249
BfaI	CTAG	2 cut(s)	171, 409
BfuAI	ACCTGC	1 cut(s)	383
BisI	GCNGC	1 cut(s)	156
BlsI	GCNGC	1 cut(s)	157
Bme18I	GGWCC	1 cut(s)	320
BmgT120I	GGNCC	1 cut(s)	320
BmiI	GGNNCC	2 cut(s)	294, 378
BpiI	GAAGAC	1 cut(s)	56
Bpu10I	CCTNAGC	1 cut(s)	183
BsaI	GGTCTC	1 cut(s)	30
BsaJI	CCNNGG	1 cut(s)	137
BseDI	CCNNGG	1 cut(s)	137
BseGI	GGATG	2 cut(s)	51, 201
BseMII	CTCAG	1 cut(s)	174
BseXI	GCAGC	1 cut(s)	142
Bsh1236I	CGCG	1 cut(s)	272
BshNI	GGYRCC	1 cut(s)	292
BsiSI	CCGG	1 cut(s)	236
BsmAI	GTCTC	2 cut(s)	30, 249
Bso31I	GGTCTC	1 cut(s)	30
Bsp143I	GATC	1 cut(s)	267
BspACI	CCGC	3 cut(s)	68, 158, 272
BspCNI	CTCAG	1 cut(s)	175
BspFNI	CGCG	1 cut(s)	272
BspLI	GGNNCC	2 cut(s)	294, 378
BspMI	ACCTGC	1 cut(s)	383
BspT107I	GGYRCC	1 cut(s)	292
BspTNI	GGTCTC	1 cut(s)	30
BssECI	CCNNGG	1 cut(s)	137
BssMI	GATC	1 cut(s)	267
BssT1I	CCWWGG	1 cut(s)	137
Bst4CI	ACNGT	1 cut(s)	178
Bst6I	CTCTTC	1 cut(s)	302
BstDEI	CTNAG	1 cut(s)	183
BstF5I	GGATG	2 cut(s)	51, 201
BstFNI	CGCG	1 cut(s)	272
BstKTI	GATC	1 cut(s)	270
BstMAI	GTCTC	2 cut(s)	30, 249
BstMBI	GATC	1 cut(s)	267
BstUI	CGCG	1 cut(s)	272
BstV1I	GCAGC	1 cut(s)	142
BstV2I	GAAGAC	1 cut(s)	56
BtsCI	GGATG	2 cut(s)	51, 201
BveI	ACCTGC	1 cut(s)	383
Cfr13I	GGNCC	1 cut(s)	320
CseI	GACGC	1 cut(s)	331
CviAII	CATG	2 cut(s)	203, 289
CviJI	RGCY	4 cut(s)	155, 170, 182, 235
CviKI_1	RGCY	4 cut(s)	155, 170, 182, 235
DdeI	CTNAG	1 cut(s)	183
DpnI	GATC	1 cut(s)	269
DpnII	GATC	1 cut(s)	267
DraI	TTTAAA	1 cut(s)	7
Eam1104I	CTCTTC	1 cut(s)	302
EarI	CTCTTC	1 cut(s)	302
Eco130I	CCWWGG	1 cut(s)	137
Eco31I	GGTCTC	1 cut(s)	30
Eco47I	GGWCC	1 cut(s)	320
EcoT14I	CCWWGG	1 cut(s)	137
ErhI	CCWWGG	1 cut(s)	137
FaeI	CATG	2 cut(s)	206, 292
FatI	CATG	2 cut(s)	202, 288
FauI	CCCGC	1 cut(s)	265
FauNDI	CATATG	1 cut(s)	19
Fnu4HI	GCNGC	1 cut(s)	156
FokI	GGATG	2 cut(s)	38, 208
Fsp4HI	GCNGC	1 cut(s)	156
FspBI	CTAG	2 cut(s)	171, 409
GluI	GCNGC	1 cut(s)	156
HapII	CCGG	1 cut(s)	236
HgaI	GACGC	1 cut(s)	331
Hin1II	CATG	2 cut(s)	206, 292
HinfI	GANTC	5 cut(s)	27, 90, 142, 277, 348
HpaII	CCGG	1 cut(s)	236
HphI	GGTGA	2 cut(s)	172, 202
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	3 cut(s)	35, 347, 403
Hpy188III	TCNNGA	3 cut(s)	94, 146, 246
Hpy8I	GTNNAC	1 cut(s)	163
Hpy99I	CGWCG	2 cut(s)	16, 347
HpyAV	CCTTC	1 cut(s)	65
HpyCH4III	ACNGT	1 cut(s)	178
HpyCH4IV	ACGT	1 cut(s)	165
HpyCH4V	TGCA	1 cut(s)	220
HpyF3I	CTNAG	1 cut(s)	183
HpySE526I	ACGT	1 cut(s)	165
Hsp92II	CATG	2 cut(s)	206, 292
Kzo9I	GATC	1 cut(s)	267
LmnI	GCTCC	1 cut(s)	339
LpnPI	CCDG	6 cut(s)	54, 208, 249, 309, 336, 378
Lsp1109I	GCAGC	1 cut(s)	142
MaeI	CTAG	2 cut(s)	171, 409
MaeII	ACGT	1 cut(s)	165
MalI	GATC	1 cut(s)	269
MboI	GATC	1 cut(s)	267
MboII	GAAGA	3 cut(s)	56, 99, 319
MluCI	AATT	2 cut(s)	208, 313
MlyI	GAGTC	2 cut(s)	286, 357
MmeI	TCCRAC	1 cut(s)	325
MnlI	CCTC	6 cut(s)	178, 186, 292, 303, 319, 390
MseI	TTAA	1 cut(s)	6
MspI	CCGG	1 cut(s)	236
MvnI	CGCG	1 cut(s)	272
NdeI	CATATG	1 cut(s)	19
NdeII	GATC	1 cut(s)	267
NlaIII	CATG	2 cut(s)	206, 292
NlaIV	GGNNCC	2 cut(s)	294, 378
PfeI	GAWTC	3 cut(s)	27, 90, 142
PkrI	GCNGC	1 cut(s)	157
PleI	GAGTC	2 cut(s)	285, 356
PpsI	GAGTC	2 cut(s)	285, 356
PspN4I	GGNNCC	2 cut(s)	294, 378
PspPI	GGNCC	1 cut(s)	320
SaqAI	TTAA	1 cut(s)	6
SatI	GCNGC	1 cut(s)	156
Sau3AI	GATC	1 cut(s)	267
Sau96I	GGNCC	1 cut(s)	320
SchI	GAGTC	2 cut(s)	286, 357
SetI	ASST	8 cut(s)	116, 157, 168, 189, 227, 303, 330, 397
SinI	GGWCC	1 cut(s)	320
Sse9I	AATT	2 cut(s)	208, 313
SsiI	CCGC	3 cut(s)	68, 158, 272
SspMI	CTAG	2 cut(s)	171, 409
StyI	CCWWGG	1 cut(s)	137
TaaI	ACNGT	1 cut(s)	178
TaiI	ACGT	1 cut(s)	168
TaqI	TCGA	4 cut(s)	85, 95, 123, 247
TasI	AATT	2 cut(s)	208, 313
TfiI	GAWTC	3 cut(s)	27, 90, 142
Tru1I	TTAA	1 cut(s)	6
Tru9I	TTAA	1 cut(s)	6
TseI	GCWGC	1 cut(s)	155
TspGWI	ACGGA	1 cut(s)	270
VpaK11BI	GGWCC	1 cut(s)	320
XspI	CTAG	2 cut(s)	171, 409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.