RchiOBHm_Chr6g0245151

glomerular visceral epithelial cell migration

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
1071537 .. 1089394
17858 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21971

Sequence Viewer

Length: 5904 bp
ATGGCCACCGACGTCGACGCCTCTCTCTGGTGGGACCCCTTCTCTCTCTTACTCACCGACCTCGAGAACGCTCCTCTCTCCGACGACCTCCCTCCCAATCTGGTCAAGAAATTGAAGGCCAATCACGCCTGGTTCGTCGACACAGTCTTCCTCTTCAAGCCGCCCAGTGAGAAATCAAAGGCGGCTTTGGATTCACAGCTTGTCAAAATCGGGTCGCACCAGCTGGATATCAAGCCTGAATTGAAAGATAAGGCTCTGACTATCAGCTCCTATTTGTGTCTGGATGAGGTGCAATCTTACATTCTTGTCGAAAGGTCTCTCAAGGACAACAATGTAGCTCTTGACTCTGTGGCGCACGAGTATGTTCATGCGGTGTTAATTCACTATTATATTGAGCGACAGTGCTTGCTGAAGTGTACCAGGAGTATTCTCATGCTTGCTTTGTCTCTAGAAACTTTCTCTGGAGAAGGAACTGCTATTAAGGAGGAAGCACTAAAGTTGATTTCTGATGGATTGGAGAAGAAATTAATATCTGTGCTGCAAGACCTTTTATCTTCCAATCCCCCTGAACAAATGGATGTTGACCTTTTCAGCTTGTGGGCTGAGGAGACACTAATCGAAGATAATTTGGTTTTGGATATTCTTTTCCTGGCTTATTATGAGTCACTTTGTACTTGTAATGGTGAAACGTGGAAAGGATTGTGCTTGCTGTATAAGGGAATTTTATCTGGGTCTTCTAACTTTGAAAAGCTGGCAATATCAACTGAAGCACTGCGTTCTTCTTACCAAGCCAAAGTTCAGCTTCTTCTAATTCTTATAGAAACCCTAGACCTGGAAAGTTGTCTCCAAATGGTCCATGATGAAATGCCTTTCAGGCACGGTGCATCTGCTATTACTTTGGCTGATATCCAAGAGATTGAAGCAATAATTTCAACTTTAAATGCATTTGAAACAAAAGAGGCAGGCCCATTAATTCTGGCATGGGCAGTCTTTCTTTGTCTGATTTCATCACTTCCAGGCAAAGAAGAAAACAACATACTAATGGAAATTGATCATGTTGGTTATGTTCGCCAAGCATTCGAGGCGTCATCTTTGACTTATTTTGTAGAAATCCTTGAAAGTGATGTATTGAAGGAATCTGATGGGCCTGTTGCTGGTTATCGAAGTGTGTTGAGAACTATTATTTCTGCATTTATCGCATCTTATGAGATCAATCTTCAGATGGAAGAAGGCACTCTTATGTTAATACTGGATATTCTTTGCAAAATTTATCAGGGAGAGGAGTCACTTTGTATCCAGTTCTGGGACCGAGGAAGTTTTATTGATGGTCCTATCCGGTGTCTTCTTTACAACTTAGAGAGTGAATTTCCTTTCAGGACTGTGGAGCTTGTTCGCCTTTTATCATCCCTTTGTGAGGGAACGTGGCCTGCTGAATGTGTGTACAACTTTTTAGATAAGTCTGTTGGTGTATCATCCTTGTTTAAGATTGCGAACAATTCCTTTAGGGATGGCATCTCTCAAACTGTTGAGACGGACCTCCCGTTGCATGTCCCTGGACTTGAAGGTTTGGTCATCCCCAGTAAAACTTGTGGGCATATATTAAGATTAGTTGGTGAAAATACTGCTCTTGTTCGATGGGAGTATACACAATCCGGGGTGCTAGTGTTGCTTATGCGCTTGGCCCAAGAGCTGTATTTCCAAAGAAATGAAGAAGTTCTTCTTATCCTCAACCTCCTTAGCCGGATGGTTACCTTTAGCATGGCTGTATGCTTTGCTTTGATGGATATTGGGAGCTCTTTGCATTTCCAATCAACTGGCATGAGTGGGCAGAATAGCATGTGGGTGGTTGAGATGATTAGCACTTTGGTCAGAAGGTTATCTCCTACTCCTAGCGGTGCTGCTCTTATGTCCGTGGCTATCAACATTTTGGCAAAGATGTTAAAATGTTCCCCTTCTCATGTTGCTGAGGTAGCCTTAAAAGCAAATATGTTTGATTTCGAGATTGGCGACAATGGTTCATCAAGTGAATCATGGTTACTTTCTGGAAAACTGGCGAAGATGCTTGTAATTGATTGTGAGCATAATGATAGTGACTGCGCATTGACTATATCAGTGCTGGACTTTACTCTGCAGTTCATGGAATCAGGTGTGAAGAATGATGCTGTACTGGCTTTAATCGTTTTCTCTCTTCAGTATGTTCTCGTTAACCATGAGTACTGGAAATACAAGTTAAAGCATACTCGATGGAGAGTAACATTAAAGGTGCTTGAAGTGTTGAAAAGGTGTATTACATCAACTTCATGCTCTGAAAAGCTGGATGAAGTCATCCTAGATAGGATATTCTGTGATTCTTCCATCCATAATACTCTCTTTCAAATTGTTTGTACAACACCACAAATGTTAGAGAGACTATGTTTCAGCCGTCTTATTGAGCTAACAGAGATTGAAGGTTTACAGCTGGCTATATGTTCTGTTCTAGATGTTCTTTTCATCATGCTCTCCAAATTTTCTAAGGGTACATTTTCCAGCCTTCCAATTTTTCACCAAGCAGTTTTCTCCTCAGCAACAAAACCAATTCCTGTAGTTGCAGCGCTCGTATCGTTCATATCTTATTCTCGCAATCCACGAATACAAGTTGGTGCTGCTAGGGTTTTGTCAGTGTTCTTGATGATGGCAGATATTATCCAACCATATTTGTTTGGAAGCAGCTTTGGCCTAGATGACATACAGATTGAAGATCTGAGGCATGGTATTAGTTACATATTACTTGAGCAGTCAGTATCGAATGAAGATCTCTTTGTTGCTGTAGTCAATCTGCTCACTTCTGCTGCACGTTATCAGCCTGCTTTTCTTGTTTCTGTGTTATCCACCAAATTCAATGAAGGTGTCCAACTGAGTAATGCTGGTGATATGAAGCTGCCAACAAATGAAGTTCTGTTGAGGTCATCTGAGTCTGAAAAGGCAAGTGTTGTGGATGCAGTTCTGCATTATGTTAGAAGATCTAATGATCTTATCAACAGCAATCCCCGTATACTGCTGAATGTTCTGAACTTTCTAAGAGCTCTGTGGCAAGACGCTGCTCGGTACTCTGGTATTTTGGAATGCGTGAAAGGCTCTGAAAATTTCTGGAAAAACTTGTCGAGTTCTATTTCCAAAATTTCTAGCGTGGAAGCTCCTCTACCTGAGAATTTAACTGAGACAGAAGCTCAAGATTTTGGATACAGATATCAGTGTCAATCCTCGATATTGGAAATAATGGCGAATGATGTGTTCCTGCAGAAGAAACTGTTACATGCCGAGTCACTTGTAAAACAAGTGACTGAATCACAGGACAAGATACAGAATACAGTGAGAACTGAAAAATCAAAAGGAGAAATTCTAGAGGATATTTTATCAGCCTGGTGTGGAAGCTCAGTTTGGGGCAATTTGACCAAGTCACTAAGTCATAGTGAATATGACACCAATCTATATTTGCGGGCAAAGGTTGCTGCCAGTTCAGTCACCGCCCTTGTCATGGTGAAATTAGCACGTGGTGATGCTGGAAGTTTGTCTGTGTCATTACTTGAGAAGTCCCGCATTCTTTTAAATAAGCTCCGAAGTCATCCTGCGTTTTCTGAATTGTTAGCTCAATACTCACTGCATAGTTACAGTGCAGAGAAGGAGCGAAATTATTTGATACTCAGCGATCTATATTATCATCTGCAAGGGAAGGTAGAAGGCCGTGAAATTGGTGCTGGATCATTTAAAGAACTCTCTCAGTTCTTAATTGAATCAAACATTTTTCAGACTTACCAACTTAAGTATGATGGCGATCTTTTTATAACTGGCAAAGATGCGTACCGGTTTGATCTCAAACGCGTAAGAGCTGATTTGGGATCAGATCTTTGGGATTATTCAACATGGAAGGAGTCAAAGGCGATTGCAGAAACAATGTTGAATCACATGAAGGATGTGAACTCAATGGTGTTCCTTACAAGCTCAAAACTTTCTGCACTTAGAGCATTAAGAAGTGTCTTAACTGTTTACCTGGATGATTCACTGGAGTCGAAGAGTACAGGGAGAGAGATCTCTGATCAACTGGTTTTCCCATGCATAGATCACATATGCCAGAATTTCCTTGATACAGTAAAATCATTGGCTCCAGAACTTGGTGCTTCTGAAGAAATCTTTCACTTCCTTGCAGCTCAAGCAGAATTGCTTCTTTATCTTATGATTTCTACACATAAGAGCCTGCCTCCATCTGTTTGCGTTCTTGTGCTAAAAACATCAGCTGCTGGCCTTAAAGTGTTGAGTGATTTCCAACCATTAGTTACTGGGTCATCAGTTTCTGTGGTTAGCTCTACAGTCAAGCTCTTACTCATGCTGCTTCTCTCAGCAGTGAAGTTTAGTTGTCATTATTCAAATTTAGTTGGGGAAAGAGATACAGTATCTGTTGAAAACATGGCTAAAATATCTAATCTGAGTCTACGTCTGCTACCAATTCTCTGTAACCGCATTGCTAGTGCTGAGGATTGCAGACTCTCCCTTACTACTATGGACTTGATATTGAGAAATTTCTTGACTCCCAACACTTGGTTTCCCATCATACAGAATCACCTCCAGCTTCAGCATTTTATTCTGAAGCTTCAAGATAAAAAGTCTCTTGAATCTGTGCCTATTATAATGAAGTTCTTTTTGACTCTTGCTCGTGTGAGGCAGGGTGCAGAGATGCTTATTAATCATGGTTTTCTCTCATCTCTGAGATTCTTGTTCGCTGAGTACTTGGATGATATGTCTTCTTCAGTAACTATGAGTAATAGGCTTTCCAACTCATCTGACATAATGGAAAAACCTAAACAAATTTGGGGACTGGGTTCGGCTGTCATCACAGCTATGGTTCAGTCTCTAGGAGACAGTTCTGCTTGTTCTGATGTTGTGGAGAATGTAATACCTTACTTCTTTTCTGAGAAAGCATATATGATTTCGTACTATCTCAGTGCACCGGACTTCCCATCTGATGATCATGACAAGAAAAGACCTCGTGCTCAGCAGAGACAAACCTCTCTTACTGATCTTAAAGAAACTGAGCACACTCTCATGCTAATGTGTGTGCTGGCAAAACATTGGAATTCATGGGTAAAGGCCATGAAAGAATTGGATTCCCAGCTGAGAGAGAAAAGTATCCATCTTTTAGCATTTATCAGCAGGGGAACTCAACGCCTTGGAGAAACTTCGAGTTTTAGTGCCCCTCTCATATGTCCTCCTACCCTTAAAGAGGAATTCGATACTTGCAAGAAACCCTCGTTTGTCAACAGTAGAAGTGGATGGTTTGCTCTTTCACCGCCTGGCTGCATGTCAAAACCAAAAGTGTCGGCTGCCTCTATCACATCAACAGCACTGACTATTAAAACTCAAGCTACTGCAAATGGTTATCACGTTTCTCAATCGTACTTCTCAGACACTATTGCCCTACAGATCTACAAAATTACGTTTCTCCTATTGAAGTTTCTCTGTTTACAAGCTGAGTGCGCTTCTAGAAGGTCAGAGGAGGTGGGGTTTGTTGATCTTGACCATTTTCCTGAGCTTCCAATGCCTGAGATCTTACATGGCTTACAGGATCAAGCAATTGCCATCATTACAGAACTATGTGAAGCTAACAGAATGAAGGAGATTCACATTGAAGTCCAGTCTATCTGTTGTTTGTTGCTACAAATAATGGAGATGGCCATGTACTTGGAACTTTGTGTTCTACAGATATGTGGCATAAGACCCGTGCTAGGGCGTGTGGAAGATTTTTCGAAGGAAGTTAAACTGTTGATAAAAGCGACGGAGACGCATGCTTTCCTGAAACCGTCTCTGAAGTCCTTGAAGCAGATAATGTCGGTTGTCTATCCCGGATTGGTACAGGCAGATGAATTTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

1967

Amino Acids

220.19

Weight (kDa)

5.42

Isoelectric Point (pI)

44.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 3821, 4661
AatII GACGTC 1 cut(s) 15
Acc16I TGCGCA 1 cut(s) 2098
AccB7I CCANNNNNTGG 2 cut(s) 4148, 4572
AccI GTMKAC 5 cut(s) 15, 138, 1643, 3031, 4465
AccII CGCG 1 cut(s) 3858
AciI CCGC 9 cut(s) 161, 182, 371, 1893, 3475, 3504, 3574, 4492, 5321
AclWI GGATC 3 cut(s) 3745, 3883, 5604
AcoI YGGCCR 2 cut(s) 3, 5703
AcuI CTGAAG 9 cut(s) 431, 786, 1202, 2174, 4179, 4589, 4640, 4764, 5858
AcvI CACGTG 1 cut(s) 3530
AcyI GRCGYC 3 cut(s) 12, 18, 1085
AdeI CACNNNGTG 1 cut(s) 3533
AfeI AGCGCT 1 cut(s) 2592
AflII CTTAAG 1 cut(s) 3797
AflIII ACRYGT 1 cut(s) 3856
AgeI ACCGGT 1 cut(s) 3840
AjnI CCWGG 9 cut(s) 128, 419, 648, 831, 1015, 1552, 3398, 4026, 5323
AjuI GAANNNNNNNTTGG 4 cut(s) 780, 812, 3400, 3432
Alw21I GWGCWC 5 cut(s) 1796, 3064, 4981, 5026, 5070
Alw44I GTGCAC 1 cut(s) 4977
AlwI GGATC 3 cut(s) 3745, 3883, 5604
AlwNI CAGNNNCTG 3 cut(s) 4274, 4328, 4430
Ama87I CYCGRG 1 cut(s) 62
Aor51HI AGCGCT 1 cut(s) 2592
ApaLI GTGCAC 1 cut(s) 4977
AseI ATTAAT 3 cut(s) 527, 971, 4716
AsiGI ACCGGT 1 cut(s) 3840
Asp700I GAANNNNTTC 4 cut(s) 1713, 1716, 4167, 4197
AspLEI GCGC 5 cut(s) 355, 1677, 2099, 2593, 5510
AspS9I GGNCC 8 cut(s) 34, 853, 965, 1145, 1306, 1328, 1534, 1681
AsuC2I CCSGG 2 cut(s) 1654, 5874
AsuII TTCGAA 1 cut(s) 5777
AvaI CYCGRG 1 cut(s) 62
AvaII GGWCC 5 cut(s) 34, 853, 1306, 1328, 1534
BaeGI GKGCMC 2 cut(s) 4981, 5227
BaeI ACNNNNGTAYC 2 cut(s) 3076, 3109
BalI TGGCCA 2 cut(s) 5, 5705
BanII GRGCYC 2 cut(s) 1796, 3064
BarI GAAGNNNNNNTAC 2 cut(s) 3162, 3194
BauI CACGAG 3 cut(s) 356, 4686, 5019
BbrPI CACGTG 1 cut(s) 3530
BbsI GAAGAC 4 cut(s) 139, 726, 1334, 4767
Bbv12I GWGCWC 5 cut(s) 1796, 3064, 4981, 5026, 5070
BbvCI CCTCAGC 4 cut(s) 603, 1965, 2560, 4506
BceAI ACGGC 2 cut(s) 2406, 3705
BciT130I CCWGG 9 cut(s) 130, 421, 650, 833, 1017, 1554, 3400, 4028, 5325
BciVI GTATCC 3 cut(s) 1304, 3212, 5171
BclI TGATCA 3 cut(s) 1051, 4072, 4999
BcnI CCSGG 2 cut(s) 1654, 5874
BfmI CTRYAG 7 cut(s) 2129, 2580, 2805, 3275, 4341, 5450, 5729
BfoI RGCGCY 1 cut(s) 2594
BfrI CTTAAG 1 cut(s) 3797
BfuI GTATCC 3 cut(s) 1304, 3212, 5171
BglI GCCNNNNNGGC 1 cut(s) 874
BglII AGATCT 7 cut(s) 2737, 2791, 2999, 3880, 4065, 5454, 5577
BlpI GCTNAGC 1 cut(s) 5025
BmcAI AGTACT 2 cut(s) 2216, 4760
Bme18I GGWCC 5 cut(s) 34, 853, 1306, 1328, 1534
BmeT110I CYCGRG 1 cut(s) 62
BmgT120I GGNCC 8 cut(s) 34, 853, 965, 1145, 1306, 1328, 1534, 1681
BmiI GGNNCC 4 cut(s) 35, 36, 1307, 4140
BmrI ACTGGG 4 cut(s) 159, 1572, 4323, 4859
BmsI GCATC 9 cut(s) 893, 1208, 1521, 2049, 2149, 2965, 3526, 3823, 4698
BmuI ACTGGG 4 cut(s) 159, 1572, 4323, 4859
BpiI GAAGAC 4 cut(s) 139, 726, 1334, 4767
BplI GAGNNNNNCTC 2 cut(s) 4219, 4251
BpmI CTGGAG 4 cut(s) 483, 4061, 4125, 4583
Bpu10I CCTNAGC 6 cut(s) 603, 1736, 1965, 2560, 4506, 5559
Bpu1102I GCTNAGC 1 cut(s) 5025
Bpu14I TTCGAA 1 cut(s) 5777
BpuEI CTTGAG 6 cut(s) 305, 2789, 3192, 3584, 4170, 5376
BpuMI CCSGG 2 cut(s) 1654, 5874
BsaAI YACGTR 1 cut(s) 3530
BsaBI GATNNNNATC 1 cut(s) 3810
BsaHI GRCGYC 3 cut(s) 12, 18, 1085
BsaI GGTCTC 1 cut(s) 321
BsaJI CCNNGG 5 cut(s) 1309, 1552, 1653, 1911, 5200
BsaWI WCCGGW 3 cut(s) 1335, 3840, 4981
BsaXI ACNNNNNCTCC 2 cut(s) 5519, 5549
Bse118I RCCGGY 1 cut(s) 3840
Bse3DI GCAATG 1 cut(s) 4494
Bse8I GATNNNNATC 1 cut(s) 3810
BseBI CCWGG 9 cut(s) 130, 421, 650, 833, 1017, 1554, 3400, 4028, 5325
BseDI CCNNGG 5 cut(s) 1309, 1552, 1653, 1911, 5200
BseJI GATNNNNATC 1 cut(s) 3810
BseMI GCAATG 1 cut(s) 4494
BseRI GAGGAG 6 cut(s) 63, 620, 1295, 2548, 3165, 5540
BseSI GKGCMC 2 cut(s) 4981, 5227
BseYI CCCAGC 1 cut(s) 5142
BsgI GTGCAG 4 cut(s) 2814, 3672, 3975, 4722
Bsh1236I CGCG 1 cut(s) 3858
BshTI ACCGGT 1 cut(s) 3840
BsiHKAI GWGCWC 5 cut(s) 1796, 3064, 4981, 5026, 5070
BsiHKCI CYCGRG 1 cut(s) 62
BsiSI CCGG 6 cut(s) 1336, 1653, 1741, 3841, 4982, 5874
BslFI GGGAC 5 cut(s) 47, 1319, 1535, 3556, 4860
BsmBI CGTCTC 3 cut(s) 1523, 5804, 5838
BsmFI GGGAC 5 cut(s) 47, 1319, 1535, 3556, 4860
BsmI GAATGC 3 cut(s) 1076, 3107, 3576
Bso31I GGTCTC 1 cut(s) 321
BsoBI CYCGRG 1 cut(s) 62
Bsp119I TTCGAA 1 cut(s) 5777
Bsp1286I GDGCHC 6 cut(s) 1796, 3064, 4981, 5026, 5070, 5227
Bsp1407I TGTACA 2 cut(s) 1440, 2384
Bsp1720I GCTNAGC 1 cut(s) 5025
BspACI CCGC 9 cut(s) 161, 182, 371, 1893, 3475, 3504, 3574, 4492, 5321
BspFNI CGCG 1 cut(s) 3858
BspHI TCATGA 1 cut(s) 5002
BspLI GGNNCC 4 cut(s) 35, 36, 1307, 4140
BspMAI CTGCAG 2 cut(s) 2133, 3279
BspPI GGATC 3 cut(s) 3745, 3883, 5604
BspT104I TTCGAA 1 cut(s) 5777
BspTI CTTAAG 1 cut(s) 3797
BspTNI GGTCTC 1 cut(s) 321
BsrDI GCAATG 1 cut(s) 4494
BsrFI RCCGGY 1 cut(s) 3840
BsrGI TGTACA 2 cut(s) 1440, 2384
BssAI RCCGGY 1 cut(s) 3840
BssECI CCNNGG 5 cut(s) 1309, 1552, 1653, 1911, 5200
BssNAI GTATAC 2 cut(s) 1644, 3032
BssNI GRCGYC 3 cut(s) 12, 18, 1085
BssSI CACGAG 3 cut(s) 356, 4686, 5019
BssT1I CCWWGG 1 cut(s) 5200
Bst1107I GTATAC 2 cut(s) 1644, 3032
Bst2BI CACGAG 3 cut(s) 356, 4686, 5019
Bst2UI CCWGG 9 cut(s) 130, 421, 650, 833, 1017, 1554, 3400, 4028, 5325
Bst6I CTCTTC 3 cut(s) 158, 2193, 4043
BstACI GRCGYC 3 cut(s) 12, 18, 1085
BstAFI CTTAAG 1 cut(s) 3797
BstAPI GCANNNNNTGC 1 cut(s) 3485
BstAUI TGTACA 2 cut(s) 1440, 2384
BstBAI YACGTR 1 cut(s) 3530
BstBI TTCGAA 1 cut(s) 5777
BstDSI CCRYGG 1 cut(s) 1911
BstEII GGTNACC 1 cut(s) 1747
BstENI CCTNNNNNAGG 2 cut(s) 1412, 5252
BstFNI CGCG 1 cut(s) 3858
BstH2I RGCGCY 1 cut(s) 2594
BstHHI GCGC 5 cut(s) 355, 1677, 2099, 2593, 5510
BstNI CCWGG 9 cut(s) 130, 421, 650, 833, 1017, 1554, 3400, 4028, 5325
BstNSI RCATGY 5 cut(s) 1550, 1840, 3296, 5335, 5819
BstPI GGTNACC 1 cut(s) 1747
BstSFI CTRYAG 7 cut(s) 2129, 2580, 2805, 3275, 4341, 5450, 5729
BstSLI GKGCMC 2 cut(s) 4981, 5227
BstUI CGCG 1 cut(s) 3858
BstV2I GAAGAC 4 cut(s) 139, 726, 1334, 4767
BstX2I RGATCY 7 cut(s) 2737, 2791, 2999, 3880, 4065, 5454, 5577
BstXI CCANNNNNNTGG 2 cut(s) 1814, 5713
BstYI RGATCY 7 cut(s) 2737, 2791, 2999, 3880, 4065, 5454, 5577
BstZ17I GTATAC 2 cut(s) 1644, 3032
BsuI GTATCC 3 cut(s) 1304, 3212, 5171
BtgI CCRYGG 1 cut(s) 1911
BtsI GCAGTG 3 cut(s) 770, 3635, 4383
CaiI CAGNNNCTG 3 cut(s) 4274, 4328, 4430
CciI TCATGA 1 cut(s) 5002
CfoI GCGC 5 cut(s) 355, 1677, 2099, 2593, 5510
Cfr10I RCCGGY 1 cut(s) 3840
Cfr13I GGNCC 8 cut(s) 34, 853, 965, 1145, 1306, 1328, 1534, 1681
CseI GACGC 4 cut(s) 26, 1074, 3083, 5821
CspAI ACCGGT 1 cut(s) 3840
CspCI CAANNNNNGTGG 2 cut(s) 2952, 2987
DraI TTTAAA 3 cut(s) 939, 3585, 3745
DraIII CACNNNGTG 1 cut(s) 3533
EaeI YGGCCR 2 cut(s) 3, 5703
Eam1104I CTCTTC 3 cut(s) 158, 2193, 4043
EarI CTCTTC 3 cut(s) 158, 2193, 4043
Ecl136II GAGCTC 2 cut(s) 1794, 3062
Eco130I CCWWGG 1 cut(s) 5200
Eco24I GRGCYC 2 cut(s) 1796, 3064
Eco31I GGTCTC 1 cut(s) 321
Eco32I GATATC 3 cut(s) 229, 907, 3227
Eco47I GGWCC 5 cut(s) 34, 853, 1306, 1328, 1534
Eco47III AGCGCT 1 cut(s) 2592
Eco53kI GAGCTC 2 cut(s) 1794, 3062
Eco57I CTGAAG 9 cut(s) 431, 786, 1202, 2174, 4179, 4589, 4640, 4764, 5858
Eco72I CACGTG 1 cut(s) 3530
Eco88I CYCGRG 1 cut(s) 62
Eco91I GGTNACC 1 cut(s) 1747
EcoICRI GAGCTC 2 cut(s) 1794, 3062
EcoNI CCTNNNNNAGG 2 cut(s) 1412, 5252
EcoO109I RGGNCCY 1 cut(s) 34
EcoO65I GGTNACC 1 cut(s) 1747
EcoRI GAATTC 2 cut(s) 5107, 5258
EcoRII CCWGG 9 cut(s) 128, 419, 648, 831, 1015, 1552, 3398, 4026, 5323
EcoRV GATATC 3 cut(s) 229, 907, 3227
EcoT14I CCWWGG 1 cut(s) 5200
EcoT22I ATGCAT 2 cut(s) 946, 4094
EcoT38I GRGCYC 2 cut(s) 1796, 3064
ErhI CCWWGG 1 cut(s) 5200
Esp3I CGTCTC 3 cut(s) 1523, 5804, 5838
FalI AAGNNNNNCTT 8 cut(s) 786, 818, 1221, 1253, 1701, 1733, 1704, 1736
FaqI GGGAC 5 cut(s) 47, 1319, 1535, 3556, 4860
FauI CCCGC 2 cut(s) 3468, 3581
FauNDI CATATG 2 cut(s) 4103, 5234
FbaI TGATCA 3 cut(s) 1051, 4072, 4999
FblI GTMKAC 5 cut(s) 15, 138, 1643, 3031, 4465
FriOI GRGCYC 2 cut(s) 1796, 3064
FspI TGCGCA 1 cut(s) 2098
GlaI GCGC 5 cut(s) 354, 1676, 2098, 2592, 5509
GsaI CCCAGC 1 cut(s) 5146
GsuI CTGGAG 4 cut(s) 483, 4061, 4125, 4583
HaeII RGCGCY 1 cut(s) 2594
HapII CCGG 6 cut(s) 1336, 1653, 1741, 3841, 4982, 5874
HgaI GACGC 4 cut(s) 26, 1074, 3083, 5821
HhaI GCGC 5 cut(s) 355, 1677, 2099, 2593, 5510
Hin1I GRCGYC 3 cut(s) 12, 18, 1085
Hin6I GCGC 5 cut(s) 353, 1675, 2097, 2591, 5508
HinP1I GCGC 5 cut(s) 353, 1675, 2097, 2591, 5508
HincII GTYRAC 5 cut(s) 16, 139, 583, 2206, 5290
HindII GTYRAC 5 cut(s) 16, 139, 583, 2206, 5290
HindIII AAGCTT 1 cut(s) 4622
HpaI GTTAAC 1 cut(s) 2206
HpaII CCGG 6 cut(s) 1336, 1653, 1741, 3841, 4982, 5874
Hpy99I CGWCG 6 cut(s) 14, 17, 20, 86, 140, 5809
HpyCH4IV ACGT 8 cut(s) 12, 689, 1421, 2833, 3529, 4468, 5415, 5468
HpySE526I ACGT 8 cut(s) 12, 689, 1421, 2833, 3529, 4468, 5415, 5468
Hsp92I GRCGYC 3 cut(s) 12, 18, 1085
HspAI GCGC 5 cut(s) 353, 1675, 2097, 2591, 5508
KflI GGGWCCC 1 cut(s) 34
Ksp22I TGATCA 3 cut(s) 1051, 4072, 4999
KspAI GTTAAC 1 cut(s) 2206
LmnI GCTCC 8 cut(s) 76, 272, 1384, 1791, 3178, 3597, 3661, 4144
LweI GCATC 9 cut(s) 893, 1208, 1521, 2049, 2149, 2965, 3526, 3823, 4698
MaeII ACGT 8 cut(s) 12, 689, 1421, 2833, 3529, 4468, 5415, 5468
MfeI CAATTG 1 cut(s) 5604
MflI RGATCY 7 cut(s) 2737, 2791, 2999, 3880, 4065, 5454, 5577
MhlI GDGCHC 6 cut(s) 1796, 3064, 4981, 5026, 5070, 5227
MlsI TGGCCA 2 cut(s) 5, 5705
MluI ACGCGT 1 cut(s) 3856
MluNI TGGCCA 2 cut(s) 5, 5705
MmeI TCCRAC 5 cut(s) 105, 2710, 2914, 4324, 4830
Mox20I TGGCCA 2 cut(s) 5, 5705
Mph1103I ATGCAT 2 cut(s) 946, 4094
MroXI GAANNNNTTC 4 cut(s) 1713, 1716, 4167, 4197
MscI TGGCCA 2 cut(s) 5, 5705
MslI CAYNNNNRTG 7 cut(s) 360, 1040, 1238, 1841, 4871, 5075, 5081
Msp20I TGGCCA 2 cut(s) 5, 5705
MspA1I CMGCKG 4 cut(s) 223, 2458, 4271, 5146
MspCI CTTAAG 1 cut(s) 3797
MspI CCGG 6 cut(s) 1336, 1653, 1741, 3841, 4982, 5874
MunI CAATTG 1 cut(s) 5604
Mva1269I GAATGC 3 cut(s) 1076, 3107, 3576
MvaI CCWGG 9 cut(s) 130, 421, 650, 833, 1017, 1554, 3400, 4028, 5325
MvnI CGCG 1 cut(s) 3858
NciI CCSGG 2 cut(s) 1654, 5874
NdeI CATATG 2 cut(s) 4103, 5234
NlaIV GGNNCC 4 cut(s) 35, 36, 1307, 4140
NmeAIII GCCGAG 1 cut(s) 3322
NmuCI GTSAC 7 cut(s) 663, 1284, 2090, 3300, 3316, 3435, 3499
NsbI TGCGCA 1 cut(s) 2098
NsiI ATGCAT 2 cut(s) 946, 4094
NspI RCATGY 5 cut(s) 1550, 1840, 3296, 5335, 5819
NspV TTCGAA 1 cut(s) 5777
PaeI GCATGC 1 cut(s) 5819
PaeR7I CTCGAG 1 cut(s) 62
PagI TCATGA 1 cut(s) 5002
PcsI WCGNNNNNNNCGW 4 cut(s) 132, 1538, 2004, 2623
PctI GAATGC 3 cut(s) 1076, 3107, 3576
PdmI GAANNNNTTC 4 cut(s) 1713, 1716, 4167, 4197
PflFI GACNNNGTC 2 cut(s) 143, 3433
PflMI CCANNNNNTGG 2 cut(s) 4148, 4572
PfoI TCCNGGA 1 cut(s) 5872
PinAI ACCGGT 1 cut(s) 3840
PmaCI CACGTG 1 cut(s) 3530
PmlI CACGTG 1 cut(s) 3530
Ppu21I YACGTR 1 cut(s) 3530
PpuMI RGGWCCY 1 cut(s) 34
PshBI ATTAAT 3 cut(s) 527, 971, 4716
PsiI TTATAA 2 cut(s) 3821, 4661
Psp124BI GAGCTC 2 cut(s) 1796, 3064
Psp5II RGGWCCY 1 cut(s) 34
Psp6I CCWGG 9 cut(s) 128, 419, 648, 831, 1015, 1552, 3398, 4026, 5323
PspCI CACGTG 1 cut(s) 3530
PspEI GGTNACC 1 cut(s) 1747
PspFI CCCAGC 1 cut(s) 5142
PspGI CCWGG 9 cut(s) 128, 419, 648, 831, 1015, 1552, 3398, 4026, 5323
PspN4I GGNNCC 4 cut(s) 35, 36, 1307, 4140
PspPI GGNCC 8 cut(s) 34, 853, 965, 1145, 1306, 1328, 1534, 1681
PspPPI RGGWCCY 1 cut(s) 34
PstI CTGCAG 2 cut(s) 2133, 3279
PstNI CAGNNNCTG 3 cut(s) 4274, 4328, 4430
PsuI RGATCY 7 cut(s) 2737, 2791, 2999, 3880, 4065, 5454, 5577
PsyI GACNNNGTC 2 cut(s) 143, 3433
PvuII CAGCTG 4 cut(s) 223, 2458, 4271, 5146
RseI CAYNNNNRTG 7 cut(s) 360, 1040, 1238, 1841, 4871, 5075, 5081
SacI GAGCTC 2 cut(s) 1796, 3064
SalI GTCGAC 2 cut(s) 14, 137
Sau96I GGNCC 8 cut(s) 34, 853, 965, 1145, 1306, 1328, 1534, 1681
ScaI AGTACT 2 cut(s) 2216, 4760
SduI GDGCHC 6 cut(s) 1796, 3064, 4981, 5026, 5070, 5227
SfaNI GCATC 9 cut(s) 893, 1208, 1521, 2049, 2149, 2965, 3526, 3823, 4698
SfcI CTRYAG 7 cut(s) 2129, 2580, 2805, 3275, 4341, 5450, 5729
Sfr274I CTCGAG 1 cut(s) 62
SfuI TTCGAA 1 cut(s) 5777
SgrDI CGTCGACG 1 cut(s) 14
SinI GGWCC 5 cut(s) 34, 853, 1306, 1328, 1534
SlaI CTCGAG 1 cut(s) 62
SmiMI CAYNNNNRTG 7 cut(s) 360, 1040, 1238, 1841, 4871, 5075, 5081
SmlI CTYRAG 8 cut(s) 62, 320, 2768, 3207, 3563, 3797, 4185, 5391
SmoI CTYRAG 8 cut(s) 62, 320, 2768, 3207, 3563, 3797, 4185, 5391
SphI GCATGC 1 cut(s) 5819
SsiI CCGC 9 cut(s) 161, 182, 371, 1893, 3475, 3504, 3574, 4492, 5321
SstI GAGCTC 2 cut(s) 1796, 3064
StyI CCWWGG 1 cut(s) 5200
TaiI ACGT 8 cut(s) 15, 692, 1424, 2836, 3532, 4471, 5418, 5471
TaqII GACCGA 1 cut(s) 1323
TatI WGTACW 8 cut(s) 671, 1440, 2164, 2214, 2384, 4052, 4758, 5709
TauI GCSGC 2 cut(s) 163, 185
TseFI GTSAC 7 cut(s) 663, 1284, 2090, 3300, 3316, 3435, 3499
Tsp45I GTSAC 7 cut(s) 663, 1284, 2090, 3300, 3316, 3435, 3499
TspGWI ACGGA 3 cut(s) 1547, 1900, 5822
Tth111I GACNNNGTC 2 cut(s) 143, 3433
Van91I CCANNNNNTGG 2 cut(s) 4148, 4572
Vha464I CTTAAG 1 cut(s) 3797
VneI GTGCAC 1 cut(s) 4977
VpaK11BI GGWCC 5 cut(s) 34, 853, 1306, 1328, 1534
VspI ATTAAT 3 cut(s) 527, 971, 4716
XagI CCTNNNNNAGG 2 cut(s) 1412, 5252
XbaI TCTAGA 4 cut(s) 448, 2476, 3379, 5513
XceI RCATGY 5 cut(s) 1550, 1840, 3296, 5335, 5819
XcmI CCANNNNNNNNNTGG 1 cut(s) 5131
XhoI CTCGAG 1 cut(s) 62
XmiI GTMKAC 5 cut(s) 15, 138, 1643, 3031, 4465
XmnI GAANNNNTTC 4 cut(s) 1713, 1716, 4167, 4197
ZraI GACGTC 1 cut(s) 13
ZrmI AGTACT 2 cut(s) 2216, 4760
Zsp2I ATGCAT 2 cut(s) 946, 4094
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.