Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0021462

Physical Location & Seq

Genomic Coordinates Reverse (-)

15832479 .. 15835321

Gene Structure 2843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23396

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGATTCATATACACTGAAGTCCGTGGCAGAGTTTCCTGGCTTCTTTAAGGGTAACACACCTGGCAGCATAGAAGCAGATGGTAAGCCATCTGAGGCAAAAGAAAAGTTACCGATCAAAATATCAAAAGTTAGCCTGGGCAGCTTAAACATGATTACCGGAAAGAATAATGAGCTTCCTAAAACATCAAGAGCCTCGGCTAATGGAGTTTATTCTAAGAGCTCCTACTCCAGCATATGCAGATTATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

83

Amino Acids

8.85

Weight (kDa)

9.52

Isoelectric Point (pI)

17.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFMR_assoc	PF16596	35 - 77	6.3e-13	Disordered region downstream of MFMR

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021462)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0260881
rosa_rugosa	Rorug07G0281300
rosa_samantha	Rh4BG054400 Rh5CG314600 Rh6BG237800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	38
AjnI	CCWGG	3 cut(s)	37, 61, 135
AluBI	AGCT	3 cut(s)	144, 175, 222
AluI	AGCT	3 cut(s)	144, 175, 222
Alw21I	GWGCWC	1 cut(s)	224
ApeKI	GCWGC	2 cut(s)	66, 141
BanII	GRGCYC	1 cut(s)	224
Bbv12I	GWGCWC	1 cut(s)	224
BbvI	GCAGC	2 cut(s)	78, 153
BccI	CCATC	2 cut(s)	74, 97
BciT130I	CCWGG	3 cut(s)	39, 63, 137
BisI	GCNGC	2 cut(s)	67, 142
BlsI	GCNGC	2 cut(s)	68, 143
Bme1390I	CCNGG	3 cut(s)	39, 63, 137
BmrFI	CCNGG	3 cut(s)	39, 63, 137
BpmI	CTGGAG	1 cut(s)	214
BsaJI	CCNNGG	3 cut(s)	24, 136, 195
BsaWI	WCCGGW	1 cut(s)	158
BseBI	CCWGG	3 cut(s)	39, 63, 137
BseDI	CCNNGG	3 cut(s)	24, 136, 195
BseMII	CTCAG	1 cut(s)	84
BseXI	GCAGC	2 cut(s)	78, 153
BsiHKAI	GWGCWC	1 cut(s)	224
BsiSI	CCGG	1 cut(s)	159
Bsp1286I	GDGCHC	1 cut(s)	224
Bsp143I	GATC	1 cut(s)	114
BspCNI	CTCAG	1 cut(s)	85
BssECI	CCNNGG	3 cut(s)	24, 136, 195
BssMI	GATC	1 cut(s)	114
Bst2UI	CCWGG	3 cut(s)	39, 63, 137
BstDEI	CTNAG	2 cut(s)	93, 216
BstDSI	CCRYGG	1 cut(s)	24
BstKTI	GATC	1 cut(s)	117
BstMBI	GATC	1 cut(s)	114
BstMWI	GCNNNNNNNGC	1 cut(s)	141
BstNI	CCWGG	3 cut(s)	39, 63, 137
BstSCI	CCNGG	3 cut(s)	37, 61, 135
BstV1I	GCAGC	2 cut(s)	78, 153
BtgI	CCRYGG	1 cut(s)	24
BtsIMutI	CAGTG	1 cut(s)	14
CviAII	CATG	1 cut(s)	151
CviJI	RGCY	8 cut(s)	42, 88, 135, 144, 175, 194, 200, 222
CviKI_1	RGCY	8 cut(s)	42, 88, 135, 144, 175, 194, 200, 222
DdeI	CTNAG	2 cut(s)	93, 216
DpnI	GATC	1 cut(s)	116
DpnII	GATC	1 cut(s)	114
Ecl136II	GAGCTC	1 cut(s)	222
Eco24I	GRGCYC	1 cut(s)	224
Eco53kI	GAGCTC	1 cut(s)	222
Eco57I	CTGAAG	1 cut(s)	38
EcoICRI	GAGCTC	1 cut(s)	222
EcoRII	CCWGG	3 cut(s)	37, 61, 135
EcoT38I	GRGCYC	1 cut(s)	224
FaeI	CATG	1 cut(s)	154
FaiI	YATR	6 cut(s)	10, 12, 71, 152, 236, 238
FatI	CATG	1 cut(s)	150
FauNDI	CATATG	1 cut(s)	236
Fnu4HI	GCNGC	2 cut(s)	67, 142
FriOI	GRGCYC	1 cut(s)	224
Fsp4HI	GCNGC	2 cut(s)	67, 142
GluI	GCNGC	2 cut(s)	67, 142
GsuI	CTGGAG	1 cut(s)	214
HapII	CCGG	1 cut(s)	159
Hin1II	CATG	1 cut(s)	154
HinfI	GANTC	1 cut(s)	5
HpaII	CCGG	1 cut(s)	159
Hpy188I	TCNGA	1 cut(s)	94
Hpy188III	TCNNGA	2 cut(s)	189, 249
HpyCH4V	TGCA	1 cut(s)	240
HpyF10VI	GCNNNNNNNGC	1 cut(s)	141
HpyF3I	CTNAG	2 cut(s)	93, 216
Hsp92II	CATG	1 cut(s)	154
Kzo9I	GATC	1 cut(s)	114
LmnI	GCTCC	1 cut(s)	227
LpnPI	CCDG	8 cut(s)	24, 48, 51, 75, 122, 149, 172, 244
Lsp1109I	GCAGC	2 cut(s)	78, 153
MaeIII	GTNAC	2 cut(s)	53, 108
MalI	GATC	1 cut(s)	116
MboI	GATC	1 cut(s)	114
MhlI	GDGCHC	1 cut(s)	224
MnlI	CCTC	2 cut(s)	88, 205
MseI	TTAA	2 cut(s)	48, 146
MspI	CCGG	1 cut(s)	159
MspR9I	CCNGG	3 cut(s)	39, 63, 137
MvaI	CCWGG	3 cut(s)	39, 63, 137
MwoI	GCNNNNNNNGC	1 cut(s)	141
NdeI	CATATG	1 cut(s)	236
NdeII	GATC	1 cut(s)	114
NlaIII	CATG	1 cut(s)	154
NmeAIII	GCCGAG	1 cut(s)	176
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	2 cut(s)	68, 143
Psp124BI	GAGCTC	1 cut(s)	224
Psp6I	CCWGG	3 cut(s)	37, 61, 135
PspGI	CCWGG	3 cut(s)	37, 61, 135
SacI	GAGCTC	1 cut(s)	224
SaqAI	TTAA	2 cut(s)	48, 146
SatI	GCNGC	2 cut(s)	67, 142
Sau3AI	GATC	1 cut(s)	114
ScrFI	CCNGG	3 cut(s)	39, 63, 137
SduI	GDGCHC	1 cut(s)	224
SetI	ASST	4 cut(s)	64, 146, 177, 224
SstI	GAGCTC	1 cut(s)	224
StyD4I	CCNGG	3 cut(s)	37, 61, 135
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	2 cut(s)	48, 146
Tru9I	TTAA	2 cut(s)	48, 146
TscAI	CASTG	1 cut(s)	21
TseI	GCWGC	2 cut(s)	66, 141
TspGWI	ACGGA	1 cut(s)	13
TspRI	CASTG	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.