Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0021462

Physical Location & Seq

Genomic Coordinates Reverse (-)

44404990 .. 44405364

Gene Structure 375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG237800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGCCCTCGCCAAATGGGATTGTAGAGGCTTCTGGTAACACACCTAGCAGCATAGAAGCATATGGTAAGCCATCTAAGGCAAAAGAAAAGTTACCGATCAAAACATCAAAAGTTAGCCTGGGCAGCTTAAACATGATTACCGGAAAGAATAATGAGCTTCCTAAAACATCAAGAGCCTCGGCTAATGGAGTTTATTCTAAGAGGTATCCTCGGCCAATGCCTTTGCATGTGGAATTAAAGTTTACTCTTTGGATTGACCTGGGGGAGGGCAGAATTATTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

94

Amino Acids

10.19

Weight (kDa)

9.93

Isoelectric Point (pI)

32.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFMR_assoc	PF16596	29 - 67	7.8e-12	Disordered region downstream of MFMR

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0021462)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0260881
rosa_rugosa	Rorug07G0281300
rosa_samantha	Rh4BG054400 Rh5CG314600 Rh6BG237800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	212
AfiI	CCNNNNNNNGG	1 cut(s)	265
AjnI	CCWGG	2 cut(s)	117, 258
AluBI	AGCT	2 cut(s)	126, 157
AluI	AGCT	2 cut(s)	126, 157
AoxI	GGCC	1 cut(s)	212
ApeKI	GCWGC	2 cut(s)	48, 123
BbvI	GCAGC	2 cut(s)	60, 135
BccI	CCATC	1 cut(s)	79
BciT130I	CCWGG	2 cut(s)	119, 260
BciVI	GTATCC	1 cut(s)	216
BfaI	CTAG	1 cut(s)	45
BfuI	GTATCC	1 cut(s)	216
BisI	GCNGC	2 cut(s)	49, 124
BlsI	GCNGC	2 cut(s)	50, 125
Bme1390I	CCNGG	2 cut(s)	119, 260
BmrFI	CCNGG	2 cut(s)	119, 260
BplI	GAGNNNNNCTC	2 cut(s)	193, 225
BsaJI	CCNNGG	4 cut(s)	118, 177, 209, 259
BsaWI	WCCGGW	1 cut(s)	140
Bsc4I	CCNNNNNNNGG	1 cut(s)	265
BseBI	CCWGG	2 cut(s)	119, 260
BseDI	CCNNGG	4 cut(s)	118, 177, 209, 259
BseLI	CCNNNNNNNGG	1 cut(s)	265
BseXI	GCAGC	2 cut(s)	60, 135
BshFI	GGCC	1 cut(s)	214
BsiSI	CCGG	1 cut(s)	141
BslI	CCNNNNNNNGG	1 cut(s)	265
BsnI	GGCC	1 cut(s)	214
Bsp143I	GATC	1 cut(s)	96
BspANI	GGCC	1 cut(s)	214
BssECI	CCNNGG	4 cut(s)	118, 177, 209, 259
BssMI	GATC	1 cut(s)	96
Bst2UI	CCWGG	2 cut(s)	119, 260
BstDEI	CTNAG	2 cut(s)	75, 198
BstENI	CCTNNNNNAGG	1 cut(s)	263
BstKTI	GATC	1 cut(s)	99
BstMBI	GATC	1 cut(s)	96
BstMWI	GCNNNNNNNGC	1 cut(s)	123
BstNI	CCWGG	2 cut(s)	119, 260
BstNSI	RCATGY	1 cut(s)	230
BstSCI	CCNGG	2 cut(s)	117, 258
BstV1I	GCAGC	2 cut(s)	60, 135
BsuI	GTATCC	1 cut(s)	216
BsuRI	GGCC	1 cut(s)	214
CviAII	CATG	2 cut(s)	133, 227
CviJI	RGCY	8 cut(s)	29, 70, 117, 126, 157, 176, 182, 214
CviKI_1	RGCY	8 cut(s)	29, 70, 117, 126, 157, 176, 182, 214
DdeI	CTNAG	2 cut(s)	75, 198
DpnI	GATC	1 cut(s)	98
DpnII	GATC	1 cut(s)	96
EaeI	YGGCCR	1 cut(s)	212
EcoNI	CCTNNNNNAGG	1 cut(s)	263
EcoRII	CCWGG	2 cut(s)	117, 258
FaeI	CATG	2 cut(s)	136, 230
FaiI	YATR	6 cut(s)	53, 61, 63, 134, 228, 283
FatI	CATG	2 cut(s)	132, 226
FauNDI	CATATG	1 cut(s)	61
Fnu4HI	GCNGC	2 cut(s)	49, 124
Fsp4HI	GCNGC	2 cut(s)	49, 124
FspBI	CTAG	1 cut(s)	45
GluI	GCNGC	2 cut(s)	49, 124
HaeIII	GGCC	1 cut(s)	214
HapII	CCGG	1 cut(s)	141
Hin1II	CATG	2 cut(s)	136, 230
HpaII	CCGG	1 cut(s)	141
Hpy166II	GTNNAC	1 cut(s)	243
Hpy188III	TCNNGA	1 cut(s)	171
Hpy8I	GTNNAC	1 cut(s)	243
HpyCH4V	TGCA	1 cut(s)	226
HpyF10VI	GCNNNNNNNGC	1 cut(s)	123
HpyF3I	CTNAG	2 cut(s)	75, 198
Hsp92II	CATG	2 cut(s)	136, 230
Kzo9I	GATC	1 cut(s)	96
LpnPI	CCDG	6 cut(s)	18, 104, 131, 154, 245, 272
Lsp1109I	GCAGC	2 cut(s)	60, 135
MaeI	CTAG	1 cut(s)	45
MaeIII	GTNAC	2 cut(s)	35, 90
MalI	GATC	1 cut(s)	98
MboI	GATC	1 cut(s)	96
MluCI	AATT	2 cut(s)	233, 273
MnlI	CCTC	6 cut(s)	16, 19, 187, 195, 219, 259
MseI	TTAA	2 cut(s)	128, 236
MspI	CCGG	1 cut(s)	141
MspR9I	CCNGG	2 cut(s)	119, 260
MvaI	CCWGG	2 cut(s)	119, 260
MwoI	GCNNNNNNNGC	1 cut(s)	123
NdeI	CATATG	1 cut(s)	61
NdeII	GATC	1 cut(s)	96
NlaIII	CATG	2 cut(s)	136, 230
NmeAIII	GCCGAG	2 cut(s)	158, 190
NspI	RCATGY	1 cut(s)	230
PkrI	GCNGC	2 cut(s)	50, 125
Psp6I	CCWGG	2 cut(s)	117, 258
PspGI	CCWGG	2 cut(s)	117, 258
SaqAI	TTAA	2 cut(s)	128, 236
SatI	GCNGC	2 cut(s)	49, 124
Sau3AI	GATC	1 cut(s)	96
ScrFI	CCNGG	2 cut(s)	119, 260
SetI	ASST	5 cut(s)	46, 128, 159, 206, 261
Sse9I	AATT	2 cut(s)	233, 273
SspMI	CTAG	1 cut(s)	45
StyD4I	CCNGG	2 cut(s)	117, 258
TasI	AATT	2 cut(s)	233, 273
Tru1I	TTAA	2 cut(s)	128, 236
Tru9I	TTAA	2 cut(s)	128, 236
TseI	GCWGC	2 cut(s)	48, 123
XagI	CCTNNNNNAGG	1 cut(s)	263
XceI	RCATGY	1 cut(s)	230
XspI	CTAG	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.