Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0021462

Physical Location & Seq

Genomic Coordinates Forward (+)

34795142 .. 34797326

Gene Structure 2185 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG314600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGGCAAAGATCAAGGAAAGGTATAACACACCTGGCAGCATAGAAGCAGATGGTAAGCCATCTGAGGCAAAAGAAAAGTTACCGATCAAAACATCAAAAGTTAGCCTGGGCAGCTTAAACATGATTACCGGAAAGAATAATGAGCTTCCTAAAACATCAAGAGCCTCGGCTAATGGAGTTTATTCTAAGAGGTATTCTGATAATTCTTTAGTGACTATTGGCCTTTGCATGTGGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

79

Amino Acids

8.62

Weight (kDa)

9.67

Isoelectric Point (pI)

21.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFMR_assoc	PF16596	25 - 64	2.2e-12	Disordered region downstream of MFMR

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0021462)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0260881
rosa_rugosa	Rorug07G0281300
rosa_samantha	Rh4BG054400 Rh5CG314600 Rh6BG237800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AjnI	CCWGG	2 cut(s)	31, 105
AluBI	AGCT	2 cut(s)	114, 145
AluI	AGCT	2 cut(s)	114, 145
AoxI	GGCC	1 cut(s)	220
ApeKI	GCWGC	2 cut(s)	36, 111
BbvI	GCAGC	2 cut(s)	48, 123
BccI	CCATC	2 cut(s)	44, 67
BciT130I	CCWGG	2 cut(s)	33, 107
BisI	GCNGC	2 cut(s)	37, 112
BlsI	GCNGC	2 cut(s)	38, 113
Bme1390I	CCNGG	2 cut(s)	33, 107
BmrFI	CCNGG	2 cut(s)	33, 107
BsaJI	CCNNGG	2 cut(s)	106, 165
BsaWI	WCCGGW	1 cut(s)	128
BseBI	CCWGG	2 cut(s)	33, 107
BseDI	CCNNGG	2 cut(s)	106, 165
BseMII	CTCAG	1 cut(s)	54
BseXI	GCAGC	2 cut(s)	48, 123
BshFI	GGCC	1 cut(s)	222
BsiSI	CCGG	1 cut(s)	129
BsnI	GGCC	1 cut(s)	222
Bsp143I	GATC	2 cut(s)	9, 84
BspANI	GGCC	1 cut(s)	222
BspCNI	CTCAG	1 cut(s)	55
BssECI	CCNNGG	2 cut(s)	106, 165
BssMI	GATC	2 cut(s)	9, 84
Bst2UI	CCWGG	2 cut(s)	33, 107
BstDEI	CTNAG	2 cut(s)	63, 186
BstKTI	GATC	2 cut(s)	12, 87
BstMBI	GATC	2 cut(s)	9, 84
BstMWI	GCNNNNNNNGC	1 cut(s)	111
BstNI	CCWGG	2 cut(s)	33, 107
BstNSI	RCATGY	1 cut(s)	232
BstSCI	CCNGG	2 cut(s)	31, 105
BstV1I	GCAGC	2 cut(s)	48, 123
BsuRI	GGCC	1 cut(s)	222
CviAII	CATG	2 cut(s)	121, 229
CviJI	RGCY	7 cut(s)	58, 105, 114, 145, 164, 170, 222
CviKI_1	RGCY	7 cut(s)	58, 105, 114, 145, 164, 170, 222
DdeI	CTNAG	2 cut(s)	63, 186
DpnI	GATC	2 cut(s)	11, 86
DpnII	GATC	2 cut(s)	9, 84
EcoRII	CCWGG	2 cut(s)	31, 105
FaeI	CATG	2 cut(s)	124, 232
FaiI	YATR	4 cut(s)	24, 41, 122, 230
FatI	CATG	2 cut(s)	120, 228
Fnu4HI	GCNGC	2 cut(s)	37, 112
Fsp4HI	GCNGC	2 cut(s)	37, 112
GluI	GCNGC	2 cut(s)	37, 112
HaeIII	GGCC	1 cut(s)	222
HapII	CCGG	1 cut(s)	129
Hin1II	CATG	2 cut(s)	124, 232
HpaII	CCGG	1 cut(s)	129
Hpy188I	TCNGA	2 cut(s)	64, 199
Hpy188III	TCNNGA	1 cut(s)	159
HpyCH4V	TGCA	1 cut(s)	228
HpyF10VI	GCNNNNNNNGC	1 cut(s)	111
HpyF3I	CTNAG	2 cut(s)	63, 186
Hsp92II	CATG	2 cut(s)	124, 232
Kzo9I	GATC	2 cut(s)	9, 84
LpnPI	CCDG	5 cut(s)	18, 45, 92, 119, 142
Lsp1109I	GCAGC	2 cut(s)	48, 123
MaeIII	GTNAC	2 cut(s)	78, 211
MalI	GATC	2 cut(s)	11, 86
MboI	GATC	2 cut(s)	9, 84
MluCI	AATT	2 cut(s)	202, 235
MnlI	CCTC	3 cut(s)	58, 175, 183
MseI	TTAA	1 cut(s)	116
MspI	CCGG	1 cut(s)	129
MspR9I	CCNGG	2 cut(s)	33, 107
MvaI	CCWGG	2 cut(s)	33, 107
MwoI	GCNNNNNNNGC	1 cut(s)	111
NdeII	GATC	2 cut(s)	9, 84
NlaIII	CATG	2 cut(s)	124, 232
NmeAIII	GCCGAG	1 cut(s)	146
NmuCI	GTSAC	1 cut(s)	211
NspI	RCATGY	1 cut(s)	232
PkrI	GCNGC	2 cut(s)	38, 113
Psp6I	CCWGG	2 cut(s)	31, 105
PspGI	CCWGG	2 cut(s)	31, 105
SaqAI	TTAA	1 cut(s)	116
SatI	GCNGC	2 cut(s)	37, 112
Sau3AI	GATC	2 cut(s)	9, 84
ScrFI	CCNGG	2 cut(s)	33, 107
SetI	ASST	5 cut(s)	23, 34, 116, 147, 194
SgeI	CNNG	9 cut(s)	25, 44, 45, 118, 119, 133, 141, 171, 178
Sse9I	AATT	2 cut(s)	202, 235
StyD4I	CCNGG	2 cut(s)	31, 105
TasI	AATT	2 cut(s)	202, 235
Tru1I	TTAA	1 cut(s)	116
Tru9I	TTAA	1 cut(s)	116
TseFI	GTSAC	1 cut(s)	211
TseI	GCWGC	2 cut(s)	36, 111
Tsp45I	GTSAC	1 cut(s)	211
XceI	RCATGY	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.