Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0021462

Physical Location & Seq

Genomic Coordinates Forward (+)

9819209 .. 9821089

Gene Structure 1881 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG054400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGGATTCACATACACTAAAGTCCGTGGCAGAGTTTCCTGGCTTCTTTAAGGGTAACACACCTGGCAGCATAGAAGCAGATGGTAAGCCATCTGAGGTAAAAGAAAAGTTACCGATCAAAACATCAAAAGTTAGCCTGGGCAGCTTAAACATGATTACCGGAAAGAATAATGAGCTTCCTAAAAAATCAAGAGTCTCGGCTAACGGAGTTTATTCTAAGAGGTGTTCTTATAATTCTTTAGTGACTATTGGCCTTTGCATGTGGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

89

Amino Acids

9.65

Weight (kDa)

9.55

Isoelectric Point (pI)

21.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFMR_assoc	PF16596	35 - 76	1.7e-11	Disordered region downstream of MFMR

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0021462)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0260881
rosa_rugosa	Rorug07G0281300
rosa_samantha	Rh4BG054400 Rh5CG314600 Rh6BG237800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	231
AjnI	CCWGG	3 cut(s)	37, 61, 135
AluBI	AGCT	2 cut(s)	144, 175
AluI	AGCT	2 cut(s)	144, 175
Alw26I	GTCTC	1 cut(s)	199
AoxI	GGCC	1 cut(s)	250
ApeKI	GCWGC	2 cut(s)	66, 141
BbvI	GCAGC	2 cut(s)	78, 153
BccI	CCATC	2 cut(s)	74, 97
BciT130I	CCWGG	3 cut(s)	39, 63, 137
BcoDI	GTCTC	1 cut(s)	199
BisI	GCNGC	2 cut(s)	67, 142
BlsI	GCNGC	2 cut(s)	68, 143
Bme1390I	CCNGG	3 cut(s)	39, 63, 137
BmrFI	CCNGG	3 cut(s)	39, 63, 137
BsaJI	CCNNGG	2 cut(s)	24, 136
BsaWI	WCCGGW	1 cut(s)	158
BseBI	CCWGG	3 cut(s)	39, 63, 137
BseDI	CCNNGG	2 cut(s)	24, 136
BseMII	CTCAG	1 cut(s)	84
BseXI	GCAGC	2 cut(s)	78, 153
BshFI	GGCC	1 cut(s)	252
BsiSI	CCGG	1 cut(s)	159
BsmAI	GTCTC	1 cut(s)	199
BsnI	GGCC	1 cut(s)	252
Bsp143I	GATC	1 cut(s)	114
BspANI	GGCC	1 cut(s)	252
BspCNI	CTCAG	1 cut(s)	85
BssECI	CCNNGG	2 cut(s)	24, 136
BssMI	GATC	1 cut(s)	114
Bst2UI	CCWGG	3 cut(s)	39, 63, 137
BstDEI	CTNAG	2 cut(s)	93, 216
BstDSI	CCRYGG	1 cut(s)	24
BstKTI	GATC	1 cut(s)	117
BstMAI	GTCTC	1 cut(s)	199
BstMBI	GATC	1 cut(s)	114
BstMWI	GCNNNNNNNGC	1 cut(s)	141
BstNI	CCWGG	3 cut(s)	39, 63, 137
BstNSI	RCATGY	1 cut(s)	262
BstSCI	CCNGG	3 cut(s)	37, 61, 135
BstV1I	GCAGC	2 cut(s)	78, 153
BsuRI	GGCC	1 cut(s)	252
BtgI	CCRYGG	1 cut(s)	24
CviAII	CATG	2 cut(s)	151, 259
CviJI	RGCY	7 cut(s)	42, 88, 135, 144, 175, 200, 252
CviKI_1	RGCY	7 cut(s)	42, 88, 135, 144, 175, 200, 252
DdeI	CTNAG	2 cut(s)	93, 216
DpnI	GATC	1 cut(s)	116
DpnII	GATC	1 cut(s)	114
EcoRII	CCWGG	3 cut(s)	37, 61, 135
FaeI	CATG	2 cut(s)	154, 262
FaiI	YATR	5 cut(s)	12, 71, 152, 231, 260
FatI	CATG	2 cut(s)	150, 258
Fnu4HI	GCNGC	2 cut(s)	67, 142
Fsp4HI	GCNGC	2 cut(s)	67, 142
GluI	GCNGC	2 cut(s)	67, 142
HaeIII	GGCC	1 cut(s)	252
HapII	CCGG	1 cut(s)	159
Hin1II	CATG	2 cut(s)	154, 262
HinfI	GANTC	2 cut(s)	5, 192
HpaII	CCGG	1 cut(s)	159
Hpy188I	TCNGA	1 cut(s)	94
Hpy188III	TCNNGA	1 cut(s)	189
HpyCH4V	TGCA	1 cut(s)	258
HpyF10VI	GCNNNNNNNGC	1 cut(s)	141
HpyF3I	CTNAG	2 cut(s)	93, 216
Hsp92II	CATG	2 cut(s)	154, 262
Kzo9I	GATC	1 cut(s)	114
LpnPI	CCDG	7 cut(s)	24, 48, 51, 75, 122, 149, 172
Lsp1109I	GCAGC	2 cut(s)	78, 153
MaeIII	GTNAC	3 cut(s)	53, 108, 241
MalI	GATC	1 cut(s)	116
MboI	GATC	1 cut(s)	114
MluCI	AATT	2 cut(s)	232, 265
MlyI	GAGTC	1 cut(s)	201
MnlI	CCTC	2 cut(s)	88, 213
MseI	TTAA	2 cut(s)	48, 146
MspI	CCGG	1 cut(s)	159
MspR9I	CCNGG	3 cut(s)	39, 63, 137
MvaI	CCWGG	3 cut(s)	39, 63, 137
MwoI	GCNNNNNNNGC	1 cut(s)	141
NdeII	GATC	1 cut(s)	114
NlaIII	CATG	2 cut(s)	154, 262
NmeAIII	GCCGAG	1 cut(s)	176
NmuCI	GTSAC	1 cut(s)	241
NspI	RCATGY	1 cut(s)	262
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	2 cut(s)	68, 143
PleI	GAGTC	1 cut(s)	200
PpsI	GAGTC	1 cut(s)	200
PsiI	TTATAA	1 cut(s)	231
Psp6I	CCWGG	3 cut(s)	37, 61, 135
PspGI	CCWGG	3 cut(s)	37, 61, 135
SaqAI	TTAA	2 cut(s)	48, 146
SatI	GCNGC	2 cut(s)	67, 142
Sau3AI	GATC	1 cut(s)	114
SchI	GAGTC	1 cut(s)	201
ScrFI	CCNGG	3 cut(s)	39, 63, 137
SetI	ASST	5 cut(s)	64, 99, 146, 177, 224
Sse9I	AATT	2 cut(s)	232, 265
StyD4I	CCNGG	3 cut(s)	37, 61, 135
TasI	AATT	2 cut(s)	232, 265
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	2 cut(s)	48, 146
Tru9I	TTAA	2 cut(s)	48, 146
TseFI	GTSAC	1 cut(s)	241
TseI	GCWGC	2 cut(s)	66, 141
Tsp45I	GTSAC	1 cut(s)	241
TspGWI	ACGGA	2 cut(s)	13, 219
XceI	RCATGY	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.