RchiOBHm_Chr6g0274351

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
35830324 .. 35832695
2372 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24611

Sequence Viewer

Length: 1266 bp
ATGCTTCGCCACATCTATCGATCTTCTTCCTTCTCTTCATCATCCCACAGAAAACCCAAACCCAAACCAAAACCGCTCCCCATGGGCTGCGTCCAAGCCAAACCCGAGATGAACGGTTCCACCAGACCTGTGGGGCTCGAAAGGCTCAAGCTGGATAATGGTTATGTGGGGAATGCTCAGAGAAGACCACCGCCGAGTGTGGATGATGGCAGTGGTAACGGCACTGGAGGAGAGGATCATAGTGAGGTGGCCGAGAGAGATAATAATAATAATAATAATAAGCATCCTCCTAGTTCTCGTAGAATTTCTGCTGCTGATGACGACGAGTTGGTCGATGGCTGGCCTAAATGGCTCACTGATAATATTTCCAAAGACGTTTTGGCTGGCTTGGTTCCCAAGAGTGCCGACTCCTATGATAAACTCGACAAGGTGGGCGAAGGAACCTACAGCAATGTTTACAAGGCTCGAGACAGGGACACTGGAAAAATTGTTGCCTTGAAGAAGGTCCGTTTTGATACATCAGAACCTGAGAGTGTTAAATTTATGGCAAGAGAGATTATGGTATTAAGGAAATTGGATCATCCCAATGTGCTTAAGCTTGAAGGATTGGCCACTTCAAGAATGCAATATAGCATTTATCTTGTCTTTGATTTCATGCACTCAGATTTGGCAAAAGTTATTTCCAAAGCCGCAGGGCTTACTGAACCACAGGTCAAGTGCTATATGCATCAACTGCTTTCAGGTCTGCAGCACTGCCATGATCGTGGAATTTTGCATCGAGACATTAAAGGGTCGAACTTGTTGATGGATAAAAATGGGGTTCTAAAAATTGGCGATTTTGGGCTTGCGAATTATTATTCCCCAAAGCCCAAACATCCTCTTACCAACCGAGTTGTGACACTTTGGTACAGAGCTCCCGAGCTGCTGTTGGGTTCTACAGATTATGGAGTTGGAATTGATCTTTGGAGCGCTGGATGCGTCATGGCTGAAATGTTTACAGGGAGGCCACTTATGCCTGGCAGAACAGAGGTTGAGCAACTTCATAGGATTTTTAAGCTTTGTGGCACACCATCTGAGGAATACTGGAAAAAACTGAAGCTTTCTACAACTTTTCGACCTCCACGTTCATACAAACCCAGTCTTCAGGAAGCTCTTAAGGATTTACCTTCATCTTCCTTGGGTCTGTTGGGCACTCTTCTTGCTTTAGATCCTGCCTATCGAGGCAGTGCAGCTCTAGGTCTCAAAAATGAAGTACGTAGAAAGTGA

Protein Analysis

421

Amino Acids

46.91

Weight (kDa)

9.42

Isoelectric Point (pI)

36.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 138 - 411 4e-64 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 142 - 350 6.2e-32 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 329
AccBSI CCGCTC 1 cut(s) 76
AciI CCGC 3 cut(s) 74, 191, 690
AclWI GGATC 3 cut(s) 243, 585, 1202
AcoI YGGCCR 2 cut(s) 249, 609
AcsI RAATTY 3 cut(s) 303, 539, 768
AcuI CTGAAG 2 cut(s) 1115, 1127
AfaI GTAC 2 cut(s) 908, 1254
AfeI AGCGCT 1 cut(s) 970
AflII CTTAAG 2 cut(s) 593, 1154
AgsI TTSAA 3 cut(s) 499, 602, 618
AjnI CCWGG 1 cut(s) 1015
AjuI GAANNNNNNNTTGG 2 cut(s) 946, 978
AluBI AGCT 8 cut(s) 151, 598, 914, 922, 1057, 1099, 1151, 1232
AluI AGCT 8 cut(s) 151, 598, 914, 922, 1057, 1099, 1151, 1232
Alw21I GWGCWC 1 cut(s) 916
Alw26I GTCTC 3 cut(s) 462, 774, 1244
AlwI GGATC 3 cut(s) 243, 585, 1202
AlwNI CAGNNNCTG 1 cut(s) 527
Ama87I CYCGRG 3 cut(s) 104, 465, 917
Aor51HI AGCGCT 1 cut(s) 970
AoxI GGCC 4 cut(s) 249, 341, 609, 1004
ApeKI GCWGC 5 cut(s) 87, 311, 748, 922, 1229
ApoI RAATTY 3 cut(s) 303, 539, 768
AspLEI GCGC 1 cut(s) 971
AspS9I GGNCC 1 cut(s) 505
AvaI CYCGRG 3 cut(s) 104, 465, 917
AvaII GGWCC 1 cut(s) 505
BaeGI GKGCMC 1 cut(s) 1193
BalI TGGCCA 1 cut(s) 611
BanII GRGCYC 2 cut(s) 138, 916
BbsI GAAGAC 2 cut(s) 190, 1133
Bbv12I GWGCWC 1 cut(s) 916
BbvI GCAGC 5 cut(s) 74, 298, 760, 909, 1241
BccI CCATC 4 cut(s) 200, 329, 799, 1078
BceAI ACGGC 1 cut(s) 235
BciT130I CCWGG 1 cut(s) 1017
BcoDI GTCTC 3 cut(s) 462, 774, 1244
BfaI CTAG 2 cut(s) 291, 1235
BfmI CTRYAG 3 cut(s) 445, 746, 936
BfoI RGCGCY 1 cut(s) 972
BfrI CTTAAG 2 cut(s) 593, 1154
BglI GCCNNNNNGGC 1 cut(s) 349
BisI GCNGC 6 cut(s) 88, 312, 690, 749, 923, 1230
BlsI GCNGC 6 cut(s) 89, 313, 691, 750, 924, 1231
Bme1390I CCNGG 1 cut(s) 1017
Bme18I GGWCC 1 cut(s) 505
BmeT110I CYCGRG 3 cut(s) 104, 465, 917
BmgT120I GGNCC 1 cut(s) 505
BmiI GGNNCC 3 cut(s) 118, 393, 442
BmrFI CCNGG 1 cut(s) 1017
BmrI ACTGGG 1 cut(s) 1131
BmsI GCATC 4 cut(s) 292, 736, 784, 965
BmuI ACTGGG 1 cut(s) 1131
BpiI GAAGAC 2 cut(s) 190, 1133
BpmI CTGGAG 1 cut(s) 246
BpuEI CTTGAG 1 cut(s) 131
Bsa29I ATCGAT 1 cut(s) 19
BsaAI YACGTR 1 cut(s) 1256
BsaI GGTCTC 1 cut(s) 1244
BsaJI CCNNGG 2 cut(s) 81, 1176
Bse1I ACTGG 4 cut(s) 229, 484, 1088, 1137
Bse3DI GCAATG 1 cut(s) 457
BseBI CCWGG 1 cut(s) 1017
BseCI ATCGAT 1 cut(s) 19
BseDI CCNNGG 2 cut(s) 81, 1176
BseGI GGATG 6 cut(s) 41, 208, 283, 580, 874, 980
BseMI GCAATG 1 cut(s) 457
BseMII CTCAG 4 cut(s) 191, 519, 675, 1065
BseNI ACTGG 4 cut(s) 229, 484, 1088, 1137
BseRI GAGGAG 1 cut(s) 243
BseSI GKGCMC 1 cut(s) 1193
BseXI GCAGC 5 cut(s) 74, 298, 760, 909, 1241
BsgI GTGCAG 1 cut(s) 1248
BshFI GGCC 4 cut(s) 251, 343, 611, 1006
BshVI ATCGAT 1 cut(s) 19
BsiHKAI GWGCWC 1 cut(s) 916
BsiHKCI CYCGRG 3 cut(s) 104, 465, 917
BslFI GGGAC 1 cut(s) 488
BsmAI GTCTC 3 cut(s) 462, 774, 1244
BsmFI GGGAC 1 cut(s) 488
BsmI GAATGC 2 cut(s) 178, 627
BsnI GGCC 4 cut(s) 251, 343, 611, 1006
Bso31I GGTCTC 1 cut(s) 1244
BsoBI CYCGRG 3 cut(s) 104, 465, 917
Bsp1286I GDGCHC 3 cut(s) 138, 916, 1193
Bsp143I GATC 6 cut(s) 20, 235, 577, 760, 958, 1207
Bsp19I CCATGG 1 cut(s) 81
BspACI CCGC 3 cut(s) 74, 191, 690
BspANI GGCC 4 cut(s) 251, 343, 611, 1006
BspCNI CTCAG 4 cut(s) 190, 520, 674, 1066
BspDI ATCGAT 1 cut(s) 19
BspLI GGNNCC 3 cut(s) 118, 393, 442
BspMAI CTGCAG 1 cut(s) 750
BspPI GGATC 3 cut(s) 243, 585, 1202
BspTI CTTAAG 2 cut(s) 593, 1154
BspTNI GGTCTC 1 cut(s) 1244
BsrBI CCGCTC 1 cut(s) 76
BsrDI GCAATG 1 cut(s) 457
BsrI ACTGG 4 cut(s) 229, 484, 1088, 1137
BssECI CCNNGG 2 cut(s) 81, 1176
BssMI GATC 6 cut(s) 20, 235, 577, 760, 958, 1207
BssT1I CCWWGG 2 cut(s) 81, 1176
Bst2UI CCWGG 1 cut(s) 1017
Bst4CI ACNGT 1 cut(s) 116
Bst6I CTCTTC 2 cut(s) 40, 1200
BstAFI CTTAAG 2 cut(s) 593, 1154
BstAPI GCANNNNNTGC 1 cut(s) 733
BstBAI YACGTR 1 cut(s) 1256
BstC8I GCNNGC 3 cut(s) 341, 385, 846
BstDEI CTNAG 4 cut(s) 177, 528, 661, 1074
BstDSI CCRYGG 1 cut(s) 81
BstF5I GGATG 6 cut(s) 41, 208, 283, 580, 874, 980
BstH2I RGCGCY 1 cut(s) 972
BstHHI GCGC 1 cut(s) 971
BstKTI GATC 6 cut(s) 23, 238, 580, 763, 961, 1210
BstMAI GTCTC 3 cut(s) 462, 774, 1244
BstMBI GATC 6 cut(s) 20, 235, 577, 760, 958, 1207
BstMWI GCNNNNNNNGC 5 cut(s) 142, 349, 733, 975, 1012
BstNI CCWGG 1 cut(s) 1017
BstSCI CCNGG 1 cut(s) 1015
BstSFI CTRYAG 3 cut(s) 445, 746, 936
BstSLI GKGCMC 1 cut(s) 1193
BstSNI TACGTA 1 cut(s) 1256
BstV1I GCAGC 5 cut(s) 74, 298, 760, 909, 1241
BstV2I GAAGAC 2 cut(s) 190, 1133
BstX2I RGATCY 1 cut(s) 1207
BstXI CCANNNNNNTGG 2 cut(s) 130, 764
BstYI RGATCY 1 cut(s) 1207
Bsu15I ATCGAT 1 cut(s) 19
BsuRI GGCC 4 cut(s) 251, 343, 611, 1006
BsuTUI ATCGAT 1 cut(s) 19
BtgI CCRYGG 1 cut(s) 81
BtsCI GGATG 6 cut(s) 41, 208, 283, 580, 874, 980
BtsI GCAGTG 3 cut(s) 217, 751, 1231
BtsIMutI CAGTG 6 cut(s) 217, 222, 354, 477, 751, 1231
Cac8I GCNNGC 3 cut(s) 341, 385, 846
CaiI CAGNNNCTG 1 cut(s) 527
CfoI GCGC 1 cut(s) 971
Cfr13I GGNCC 1 cut(s) 505
ClaI ATCGAT 1 cut(s) 19
CseI GACGC 2 cut(s) 79, 967
Csp6I GTAC 2 cut(s) 907, 1253
CviAII CATG 4 cut(s) 82, 655, 758, 982
CviQI GTAC 2 cut(s) 907, 1253
DdeI CTNAG 4 cut(s) 177, 528, 661, 1074
DpnI GATC 6 cut(s) 22, 237, 579, 762, 960, 1209
DpnII GATC 6 cut(s) 20, 235, 577, 760, 958, 1207
DrdI GACNNNNNNGTC 1 cut(s) 329
DseDI GACNNNNNNGTC 1 cut(s) 329
EaeI YGGCCR 2 cut(s) 249, 609
Eam1104I CTCTTC 2 cut(s) 40, 1200
EarI CTCTTC 2 cut(s) 40, 1200
Ecl136II GAGCTC 1 cut(s) 914
Eco105I TACGTA 1 cut(s) 1256
Eco130I CCWWGG 2 cut(s) 81, 1176
Eco24I GRGCYC 2 cut(s) 138, 916
Eco31I GGTCTC 1 cut(s) 1244
Eco47I GGWCC 1 cut(s) 505
Eco47III AGCGCT 1 cut(s) 970
Eco53kI GAGCTC 1 cut(s) 914
Eco57I CTGAAG 2 cut(s) 1115, 1127
Eco88I CYCGRG 3 cut(s) 104, 465, 917
EcoICRI GAGCTC 1 cut(s) 914
EcoRII CCWGG 1 cut(s) 1015
EcoT14I CCWWGG 2 cut(s) 81, 1176
EcoT22I ATGCAT 1 cut(s) 729
EcoT38I GRGCYC 2 cut(s) 138, 916
ErhI CCWWGG 2 cut(s) 81, 1176
FaeI CATG 4 cut(s) 85, 658, 761, 985
FaqI GGGAC 1 cut(s) 488
FatI CATG 4 cut(s) 81, 654, 757, 981
Fnu4HI GCNGC 6 cut(s) 88, 312, 690, 749, 923, 1230
FokI GGATG 6 cut(s) 28, 215, 270, 567, 861, 987
FriOI GRGCYC 2 cut(s) 138, 916
Fsp4HI GCNGC 6 cut(s) 88, 312, 690, 749, 923, 1230
FspBI CTAG 2 cut(s) 291, 1235
GlaI GCGC 1 cut(s) 970
GluI GCNGC 6 cut(s) 88, 312, 690, 749, 923, 1230
GsuI CTGGAG 1 cut(s) 246
HaeII RGCGCY 1 cut(s) 972
HaeIII GGCC 4 cut(s) 251, 343, 611, 1006
HgaI GACGC 2 cut(s) 79, 967
HhaI GCGC 1 cut(s) 971
Hin1II CATG 4 cut(s) 85, 658, 761, 985
Hin6I GCGC 1 cut(s) 969
HinP1I GCGC 1 cut(s) 969
HindIII AAGCTT 3 cut(s) 596, 1055, 1097
HinfI GANTC 1 cut(s) 407
Hpy166II GTNNAC 2 cut(s) 457, 996
Hpy188I TCNGA 4 cut(s) 180, 523, 664, 1075
Hpy188III TCNNGA 5 cut(s) 467, 618, 779, 917, 1145
Hpy8I GTNNAC 2 cut(s) 457, 996
Hpy99I CGWCG 1 cut(s) 326
HpyAV CCTTC 5 cut(s) 40, 431, 496, 596, 1176
HpyCH4III ACNGT 1 cut(s) 116
HpyCH4IV ACGT 3 cut(s) 375, 1123, 1255
HpyCH4V TGCA 6 cut(s) 625, 658, 727, 748, 775, 1229
HpyF10VI GCNNNNNNNGC 5 cut(s) 142, 349, 733, 975, 1012
HpyF3I CTNAG 4 cut(s) 177, 528, 661, 1074
HpySE526I ACGT 3 cut(s) 375, 1123, 1255
Hsp92II CATG 4 cut(s) 85, 658, 761, 985
HspAI GCGC 1 cut(s) 969
Kzo9I GATC 6 cut(s) 20, 235, 577, 760, 958, 1207
LmnI GCTCC 3 cut(s) 81, 919, 966
Lsp1109I GCAGC 5 cut(s) 74, 298, 760, 909, 1241
LweI GCATC 4 cut(s) 292, 736, 784, 965
MaeI CTAG 2 cut(s) 291, 1235
MaeII ACGT 3 cut(s) 375, 1123, 1255
MaeIII GTNAC 2 cut(s) 215, 895
MalI GATC 6 cut(s) 22, 237, 579, 762, 960, 1209
MbiI CCGCTC 1 cut(s) 76
MboI GATC 6 cut(s) 20, 235, 577, 760, 958, 1207
MboII GAAGA 8 cut(s) 15, 18, 27, 195, 511, 1133, 1164, 1187
MflI RGATCY 1 cut(s) 1207
MhlI GDGCHC 3 cut(s) 138, 916, 1193
MlsI TGGCCA 1 cut(s) 611
MluCI AATT 8 cut(s) 303, 486, 539, 572, 768, 828, 850, 954
MluNI TGGCCA 1 cut(s) 611
MlyI GAGTC 1 cut(s) 401
MmeI TCCRAC 1 cut(s) 931
Mox20I TGGCCA 1 cut(s) 611
Mph1103I ATGCAT 1 cut(s) 729
MscI TGGCCA 1 cut(s) 611
MseI TTAA 6 cut(s) 537, 566, 594, 786, 1053, 1155
MslI CAYNNNNRTG 3 cut(s) 585, 756, 762
Msp20I TGGCCA 1 cut(s) 611
MspCI CTTAAG 2 cut(s) 593, 1154
MspR9I CCNGG 1 cut(s) 1017
Mva1269I GAATGC 2 cut(s) 178, 627
MvaI CCWGG 1 cut(s) 1017
MwoI GCNNNNNNNGC 5 cut(s) 142, 349, 733, 975, 1012
NcoI CCATGG 1 cut(s) 81
NdeII GATC 6 cut(s) 20, 235, 577, 760, 958, 1207
NlaIII CATG 4 cut(s) 85, 658, 761, 985
NlaIV GGNNCC 3 cut(s) 118, 393, 442
NmeAIII GCCGAG 2 cut(s) 219, 277
NmuCI GTSAC 1 cut(s) 895
NsiI ATGCAT 1 cut(s) 729
PaeR7I CTCGAG 1 cut(s) 465
PcsI WCGNNNNNNNCGW 2 cut(s) 330, 1120
PctI GAATGC 2 cut(s) 178, 627
PkrI GCNGC 6 cut(s) 89, 313, 691, 750, 924, 1231
PleI GAGTC 1 cut(s) 401
PpsI GAGTC 1 cut(s) 401
Ppu21I YACGTR 1 cut(s) 1256
Psp124BI GAGCTC 1 cut(s) 916
Psp6I CCWGG 1 cut(s) 1015
PspGI CCWGG 1 cut(s) 1015
PspN4I GGNNCC 3 cut(s) 118, 393, 442
PspPI GGNCC 1 cut(s) 505
PstI CTGCAG 1 cut(s) 750
PstNI CAGNNNCTG 1 cut(s) 527
PsuI RGATCY 1 cut(s) 1207
RsaI GTAC 2 cut(s) 908, 1254
RsaNI GTAC 2 cut(s) 907, 1253
RseI CAYNNNNRTG 3 cut(s) 585, 756, 762
SacI GAGCTC 1 cut(s) 916
SaqAI TTAA 6 cut(s) 537, 566, 594, 786, 1053, 1155
SatI GCNGC 6 cut(s) 88, 312, 690, 749, 923, 1230
Sau3AI GATC 6 cut(s) 20, 235, 577, 760, 958, 1207
Sau96I GGNCC 1 cut(s) 505
SchI GAGTC 1 cut(s) 401
ScrFI CCNGG 1 cut(s) 1017
SduI GDGCHC 3 cut(s) 138, 916, 1193
SfaNI GCATC 4 cut(s) 292, 736, 784, 965
SfcI CTRYAG 3 cut(s) 445, 746, 936
Sfr274I CTCGAG 1 cut(s) 465
SinI GGWCC 1 cut(s) 505
SlaI CTCGAG 1 cut(s) 465
SmiMI CAYNNNNRTG 3 cut(s) 585, 756, 762
SmlI CTYRAG 4 cut(s) 146, 465, 593, 1154
SmoI CTYRAG 4 cut(s) 146, 465, 593, 1154
SnaBI TACGTA 1 cut(s) 1256
Sse9I AATT 8 cut(s) 303, 486, 539, 572, 768, 828, 850, 954
SsiI CCGC 3 cut(s) 74, 191, 690
SspI AATATT 1 cut(s) 364
SspMI CTAG 2 cut(s) 291, 1235
SstI GAGCTC 1 cut(s) 916
StyD4I CCNGG 1 cut(s) 1015
StyI CCWWGG 2 cut(s) 81, 1176
TaaI ACNGT 1 cut(s) 116
TaiI ACGT 3 cut(s) 378, 1126, 1258
TaqI TCGA 9 cut(s) 19, 138, 333, 423, 466, 778, 794, 1114, 1219
TasI AATT 8 cut(s) 303, 486, 539, 572, 768, 828, 850, 954
TauI GCSGC 1 cut(s) 692
Tru1I TTAA 6 cut(s) 537, 566, 594, 786, 1053, 1155
Tru9I TTAA 6 cut(s) 537, 566, 594, 786, 1053, 1155
TscAI CASTG 6 cut(s) 217, 229, 361, 484, 758, 1231
TseFI GTSAC 1 cut(s) 895
TseI GCWGC 5 cut(s) 87, 311, 748, 922, 1229
Tsp45I GTSAC 1 cut(s) 895
TspDTI ATGAA 7 cut(s) 27, 125, 643, 1031, 1116, 1158, 1263
TspGWI ACGGA 1 cut(s) 497
TspRI CASTG 6 cut(s) 217, 229, 361, 484, 758, 1231
Vha464I CTTAAG 2 cut(s) 593, 1154
VpaK11BI GGWCC 1 cut(s) 505
XapI RAATTY 3 cut(s) 303, 539, 768
XcmI CCANNNNNNNNNTGG 2 cut(s) 127, 376
XhoI CTCGAG 1 cut(s) 465
XspI CTAG 2 cut(s) 291, 1235
Zsp2I ATGCAT 1 cut(s) 729
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.