RchiOBHm_Chr6g0275961

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0021261
Physical Location & Seq
Forward (+)
37917940 .. 37918582
643 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24757

Sequence Viewer

Length: 267 bp
ATGCATGAGCTTCTATGTGTTGAGGAAAATGATGTTCGCATGGTGGGAATATGGGGAATTGGAGGAATTGGTAAGACAACTGTTGCCAAAGCTGTATATGGGTCAATTGCTCATCGATTTGAAGGTAGCTGTTTTTTGGAAAATGTGAGAGAAAGGTCATTAGTGCCACATGAAGGCTTGGTTCAACTGCAAGAAACTCTTCTTTCCAAGATTTTAGGGGGTGTAGGAGTGAAGCTGAGCAATGTGATGATCCTGCTTATGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

88

Amino Acids

9.62

Weight (kDa)

6.82

Isoelectric Point (pI)

31.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 7 - 46 4.8e-06 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021261)

Species Orthologous Gene IDs
pyrus_communis pycom04g11010 pycom15g33760
rosa_chinensis RchiOBHm_Chr6g0275961
rosa_multiflora Rmu_sc0007384.1_g000004
rosa_samantha Rh3CG276200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 244
AfiI CCNNNNNNNGG 1 cut(s) 173
AgsI TTSAA 2 cut(s) 122, 185
AluBI AGCT 4 cut(s) 10, 92, 129, 235
AluI AGCT 4 cut(s) 10, 92, 129, 235
AlwI GGATC 1 cut(s) 244
Asp700I GAANNNNTTC 1 cut(s) 198
BlpI GCTNAGC 1 cut(s) 236
Bpu1102I GCTNAGC 1 cut(s) 236
Bsa29I ATCGAT 1 cut(s) 115
Bsc4I CCNNNNNNNGG 1 cut(s) 173
Bse3DI GCAATG 1 cut(s) 247
BseCI ATCGAT 1 cut(s) 115
BseLI CCNNNNNNNGG 1 cut(s) 173
BseMI GCAATG 1 cut(s) 247
BseMII CTCAG 1 cut(s) 227
BshVI ATCGAT 1 cut(s) 115
BslI CCNNNNNNNGG 1 cut(s) 173
Bsp143I GATC 1 cut(s) 249
Bsp1720I GCTNAGC 1 cut(s) 236
BspCNI CTCAG 1 cut(s) 228
BspDI ATCGAT 1 cut(s) 115
BspPI GGATC 1 cut(s) 244
BsrDI GCAATG 1 cut(s) 247
BssMI GATC 1 cut(s) 249
Bst4CI ACNGT 1 cut(s) 82
Bst6I CTCTTC 1 cut(s) 204
BstDEI CTNAG 1 cut(s) 236
BstKTI GATC 1 cut(s) 252
BstMBI GATC 1 cut(s) 249
Bsu15I ATCGAT 1 cut(s) 115
BsuTUI ATCGAT 1 cut(s) 115
ClaI ATCGAT 1 cut(s) 115
CviAII CATG 3 cut(s) 5, 40, 170
CviJI RGCY 5 cut(s) 10, 92, 129, 177, 235
CviKI_1 RGCY 5 cut(s) 10, 92, 129, 177, 235
DdeI CTNAG 1 cut(s) 236
DpnI GATC 1 cut(s) 251
DpnII GATC 1 cut(s) 249
Eam1104I CTCTTC 1 cut(s) 204
EarI CTCTTC 1 cut(s) 204
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 3 cut(s) 8, 43, 173
FaiI YATR 8 cut(s) 6, 16, 41, 52, 97, 99, 171, 260
FalI AAGNNNNNCTT 2 cut(s) 183, 215
FatI CATG 3 cut(s) 4, 39, 169
Hin1II CATG 3 cut(s) 8, 43, 173
HpyAV CCTTC 2 cut(s) 116, 167
HpyCH4III ACNGT 1 cut(s) 82
HpyCH4V TGCA 2 cut(s) 4, 190
HpyF3I CTNAG 1 cut(s) 236
Hsp92II CATG 3 cut(s) 8, 43, 173
Kzo9I GATC 1 cut(s) 249
MalI GATC 1 cut(s) 251
MboI GATC 1 cut(s) 249
MboII GAAGA 1 cut(s) 191
MfeI CAATTG 1 cut(s) 105
MluCI AATT 3 cut(s) 57, 66, 105
MnlI CCTC 2 cut(s) 16, 56
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 198
MunI CAATTG 1 cut(s) 105
NdeII GATC 1 cut(s) 249
NlaIII CATG 3 cut(s) 8, 43, 173
NsiI ATGCAT 1 cut(s) 6
PdmI GAANNNNTTC 1 cut(s) 198
Sau3AI GATC 1 cut(s) 249
SetI ASST 6 cut(s) 12, 94, 127, 131, 158, 237
SgeI CNNG 6 cut(s) 17, 52, 182, 190, 203, 220
Sse9I AATT 3 cut(s) 57, 66, 105
TaaI ACNGT 1 cut(s) 82
TaqI TCGA 1 cut(s) 115
TasI AATT 3 cut(s) 57, 66, 105
TspDTI ATGAA 1 cut(s) 186
XmnI GAANNNNTTC 1 cut(s) 198
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.