Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0021261

Physical Location & Seq

Genomic Coordinates Forward (+)

27501954 .. 27518021

Gene Structure 16068 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG276200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

ATGGGTTTGCTTTTAGCTCCTGCGGAGAAGGATGTTCGATTTATAGGAATATGGGGTATGGGTGGAGTGGGTAAGACTACCCTTGCTAGGCTAGTGTACGAGAAAATTTCCCATCATTTTGAGGTGGCTAAGTTTCTTGTTGATGTCAGGAAGCGTTCACTAGTCGATCTTCAAAAACAGGACCCATTTGTTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DTW Kinesin

Protein Analysis

65

Amino Acids

7.34

Weight (kDa)

9.6

Isoelectric Point (pI)

28.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NB-ARC	PF00931	9 - 59	2.3e-09	NB-ARC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021261)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g11010 pycom15g33760
rosa_chinensis	RchiOBHm_Chr6g0275961
rosa_multiflora	Rmu_sc0007384.1_g000004
rosa_samantha	Rh3CG276200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	23
AcsI	RAATTY	1 cut(s)	105
AfaI	GTAC	1 cut(s)	98
AfiI	CCNNNNNNNGG	1 cut(s)	87
AgsI	TTSAA	1 cut(s)	173
AhlI	ACTAGT	1 cut(s)	160
AluBI	AGCT	1 cut(s)	17
AluI	AGCT	1 cut(s)	17
ApoI	RAATTY	1 cut(s)	105
AspS9I	GGNCC	1 cut(s)	181
AvaII	GGWCC	1 cut(s)	181
BccI	CCATC	1 cut(s)	120
BcuI	ACTAGT	1 cut(s)	160
BfaI	CTAG	3 cut(s)	87, 92, 161
Bme18I	GGWCC	1 cut(s)	181
BmgT120I	GGNCC	1 cut(s)	181
BmiI	GGNNCC	1 cut(s)	183
Bsc4I	CCNNNNNNNGG	1 cut(s)	87
BseGI	GGATG	1 cut(s)	37
BseLI	CCNNNNNNNGG	1 cut(s)	87
BslI	CCNNNNNNNGG	1 cut(s)	87
Bsp143I	GATC	1 cut(s)	166
BspACI	CCGC	1 cut(s)	23
BspLI	GGNNCC	1 cut(s)	183
BssMI	GATC	1 cut(s)	166
BstDEI	CTNAG	1 cut(s)	129
BstF5I	GGATG	1 cut(s)	37
BstKTI	GATC	1 cut(s)	169
BstMBI	GATC	1 cut(s)	166
BtsCI	GGATG	1 cut(s)	37
Cfr13I	GGNCC	1 cut(s)	181
Csp6I	GTAC	1 cut(s)	97
CviJI	RGCY	3 cut(s)	17, 91, 128
CviKI_1	RGCY	3 cut(s)	17, 91, 128
CviQI	GTAC	1 cut(s)	97
DdeI	CTNAG	1 cut(s)	129
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
Eco47I	GGWCC	1 cut(s)	181
EcoO109I	RGGNCCY	1 cut(s)	181
FaiI	YATR	3 cut(s)	44, 52, 59
FokI	GGATG	1 cut(s)	44
FspBI	CTAG	3 cut(s)	87, 92, 161
Hpy166II	GTNNAC	2 cut(s)	97, 158
Hpy188III	TCNNGA	1 cut(s)	148
Hpy8I	GTNNAC	2 cut(s)	97, 158
HpyAV	CCTTC	1 cut(s)	22
HpyF3I	CTNAG	1 cut(s)	129
Kzo9I	GATC	1 cut(s)	166
LmnI	GCTCC	1 cut(s)	22
LpnPI	CCDG	3 cut(s)	33, 133, 164
MaeI	CTAG	3 cut(s)	87, 92, 161
MalI	GATC	1 cut(s)	168
MboI	GATC	1 cut(s)	166
MboII	GAAGA	1 cut(s)	161
MluCI	AATT	1 cut(s)	105
MnlI	CCTC	1 cut(s)	115
NdeII	GATC	1 cut(s)	166
NlaIV	GGNNCC	1 cut(s)	183
PpuMI	RGGWCCY	1 cut(s)	181
Psp5II	RGGWCCY	1 cut(s)	181
PspN4I	GGNNCC	1 cut(s)	183
PspPI	GGNCC	1 cut(s)	181
PspPPI	RGGWCCY	1 cut(s)	181
RsaI	GTAC	1 cut(s)	98
RsaNI	GTAC	1 cut(s)	97
Sau3AI	GATC	1 cut(s)	166
Sau96I	GGNCC	1 cut(s)	181
SetI	ASST	2 cut(s)	19, 126
SgeI	CNNG	9 cut(s)	32, 95, 99, 104, 112, 149, 160, 173, 191
SinI	GGWCC	1 cut(s)	181
SpeI	ACTAGT	1 cut(s)	160
Sse9I	AATT	1 cut(s)	105
SsiI	CCGC	1 cut(s)	23
SspMI	CTAG	3 cut(s)	87, 92, 161
TaqI	TCGA	2 cut(s)	37, 165
TasI	AATT	1 cut(s)	105
VpaK11BI	GGWCC	1 cut(s)	181
XapI	RAATTY	1 cut(s)	105
XspI	CTAG	3 cut(s)	87, 92, 161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.